NO02G03380, NO02G03380 (gene) Nannochloropsis oceanica

Overview
NameNO02G03380
Unique NameNO02G03380
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length801
Alignment locationchr2:906834..907634 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:906834..907634 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO02G03380 vs. NCBI_GenBank
Match: EWM30315.1 (hypothetical protein Naga_100003g147 [Nannochloropsis gaditana])

HSP 1 Score: 245.7 bits (626), Expect = 1.100e-61
Identity = 121/170 (71.18%), Postives = 140/170 (82.35%), Query Frame = 0 
Query:    8 LLLNAAHAFFLAPPSKPLQRLYSTAGAMLGSATHPLANRKIQFSDNEDDTDRVTQVQLLADGSMSFISDSTMAVDVKGSWKPAEGGKVSFLVERFYATSAMDSKYSMVRIYEGKITISGKAILGEGKIEQEKYDALFPCGFFSLISVDDGPDDFFEKLGPGHTVMPGVDQ 178
            +LL+   AF + PP + LQ + STA A+LGS THP+ANRKIQFSDNED+TDRVTQV+L  DGS+SFISDST AVDV+GSW+P + GKV FL+ERFY+ S  DSKYSM RIYEG ITISG +I GEG+IE EKY+ LF CGFFSLISVDD PDDFFEKL PGHTVM G+DQ
Sbjct:   13 VLLSRGEAFLVTPPLEKLQHICSTASAILGSTTHPMANRKIQFSDNEDNTDRVTQVELRGDGSVSFISDSTNAVDVQGSWRPGDEGKVGFLLERFYSDSG-DSKYSMTRIYEGTITISGTSIRGEGRIEMEKYNDLFTCGFFSLISVDDDPDDFFEKLKPGHTVMQGIDQ 181
The following BLAST results are available for this feature:
BLAST of NO02G03380 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30315.11.100e-6171.18hypothetical protein Naga_100003g147 [Nannochlorop... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006987NSK006987Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G03380.1NO02G03380.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574684gene_926Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100003g147gene336Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G03380.1NO02G03380.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G03380 ID=NO02G03380|Name=NO02G03380|organism=Nannochloropsis oceanica|type=gene|length=801bp
ATGAAGCTTGTCCTAGTCTCTCTCTTGCTCAATGCTGCACACGCCTTTTT
CTTGGCGCCACCCAGTAAGCCCCTGCAACGCTTGTATTCTACGGCGGGCG
CTATGTTGGGCTCCGCCACTCACCCGCTGGCCAACCGCAAAATCCAGTTC
TCCGACAACGAGGACGAgtaagtaatgcccaatgaagggctcgaggtgta
ttgtgggcgtgcgaagacagtagtttgctgggtagtttttttgtgaaacg
cccaggccatagatttacatcctttgggtcaagccatttcattttctacc
ctcttcctgtctatcatctcgtatatatacatttctcatcactttattca
atcgcattttcgcctttccatcccatccttcatattctcatctccttcat
tcctccccccccccccgcatcatctcacccacagCACAGATCGTGTAACC
CAAGTCCAACTGCTGGCGGATGGGAGTATGAGCTTCATATCGGACAGCAC
CATGGCAGTGGATGTGAAGGGGAGCTGGAAACCCGCCGAAGGTGGGAAGG
TTTCTTTCCTGGTGGAGCGCTTTTACGCGACCAGTGCGATGGATAGCAAG
TACAGCATGGTCCGTATATATGAGGGGAAAATCACCATCTCAGGGAAAGC
AATTTTAGGAGAGGGTAAAATAGAACAAGAAAAATACGATGCCCTTTTCC
CGTGCGGCTTCTTTTCCCTTATTAGCGTGGATGATGGGCCGGATGATTTT
TTTGAAAAGTTAGGGCCGGGGCACACGGTGATGCCGGGCGTGGATCAGTA
A
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protein sequence of NO02G03380.1

>NO02G03380.1-protein ID=NO02G03380.1-protein|Name=NO02G03380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=178bp
MKLVLVSLLLNAAHAFFLAPPSKPLQRLYSTAGAMLGSATHPLANRKIQF
SDNEDDTDRVTQVQLLADGSMSFISDSTMAVDVKGSWKPAEGGKVSFLVE
RFYATSAMDSKYSMVRIYEGKITISGKAILGEGKIEQEKYDALFPCGFFS
LISVDDGPDDFFEKLGPGHTVMPGVDQ*
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Synonyms
Publications