NO02G03360, NO02G03360 (gene) Nannochloropsis oceanica

Overview
NameNO02G03360
Unique NameNO02G03360
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length885
Alignment locationchr2:902981..903865 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:902981..903865 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO02G03360 vs. NCBI_GenBank
Match: EWM30254.1 (hypothetical protein Naga_100003g148 [Nannochloropsis gaditana])

HSP 1 Score: 77.8 bits (190), Expect = 2.400e-11
Identity = 54/96 (56.25%), Postives = 60/96 (62.50%), Query Frame = 0 
Query:    1 MVSGGHCLAFALRLPHGASILARSQGVVMGIERRSPFGGRRMLSTE-ESTQAAAHAPSKGSSLLQRLSSFLAGVGVTSLVGYYFLVQDVKRSTESV 96
            M  G  CL  A R  H  S    + G      R SP G  R LSTE EST   +   +KGSS  QRLSSFLAGVGVTSLVGY+FL+QDVKRST+SV
Sbjct:   57 MAHGSRCLTSAFR--HFRSPYEMTVGA-----RWSPGGCHRKLSTEAESTSLTS---NKGSSFFQRLSSFLAGVGVTSLVGYFFLIQDVKRSTDSV 142
The following BLAST results are available for this feature:
BLAST of NO02G03360 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30254.12.400e-1156.25hypothetical protein Naga_100003g148 [Nannochlorop... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006985NSK006985Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G03360.1NO02G03360.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574680gene_924Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100003g148gene335Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G03360.1NO02G03360.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G03360 ID=NO02G03360|Name=NO02G03360|organism=Nannochloropsis oceanica|type=gene|length=885bp
ATGGTTTCTGGGGGGCACTGTCTGGCGTTTGCCTTGCGTCTTCCACACGG
TGCCAGCATCTTGGCTCGATCTCAAGGGGTGGTGATGGGGATAGAACGCC
GGTCACCTTTTGGAGGCCGCCGCATGTTGTCTACGGAGGAAAGTACTCAA
GCAGCCGCTCATGCACCGTCCAAAGgtacatgagaatgatacgaaggaaa
ggggaaagtggagggggcgggggggaagagtgcaggctggcctttgtgcg
cgatgaagaggagggacagaacgcaggccagggtcttgatgttgccaggc
atggaacctgacgaatcaaaaaagtgccatcttaccctgccctccgaaac
atttggcatttcaaacagGTTCTTCGCTCCTTCAGCGGTTATCCTCCTTC
CTGGCTGGCGTGGGCGTGACGTCCTTGGTGGGCTACTATTTTCTCGTCCA
GGATGTGAAGCGgtacgtgttgggaacggacgaagctcagctctgctagt
gtctggtatttgatatcatccgaaaatattggtgacactcggtttaccaa
ctacatctccttgctggtggccacctcatgcctcgctcctacatcggctg
ctcggagatgcaaggggaaagaacatctggccgagagggctctcttttgg
gatcaggaccttttatttattattcaatttctggttttcgaacggggtac
ttttttatgcgctcccttttgtcgtacctacttatcaaattgaaactgtt
ctcccattctgacctaatcggctcctttccattcttatcttcctgcacca
cgtcaaatacagGTCGACCGAGTCGGTACAAGCGGGCATGAGCGACATCA
CAAAGAGACTGGAGGCGCTGGAGAAGAGCAAATAA
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protein sequence of NO02G03360.1

>NO02G03360.1-protein ID=NO02G03360.1-protein|Name=NO02G03360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=114bp
MVSGGHCLAFALRLPHGASILARSQGVVMGIERRSPFGGRRMLSTEESTQ
AAAHAPSKGSSLLQRLSSFLAGVGVTSLVGYYFLVQDVKRSTESVQAGMS
DITKRLEALEKSK*
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Synonyms
Publications