NO02G03200, NO02G03200 (gene) Nannochloropsis oceanica

Overview
NameNO02G03200
Unique NameNO02G03200
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length896
Alignment locationchr2:859573..860468 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:859573..860468 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO02G03200 vs. NCBI_GenBank
Match: EWM30247.1 (hypothetical protein Naga_100003g165 [Nannochloropsis gaditana])

HSP 1 Score: 89.0 bits (219), Expect = 1.500e-14
Identity = 69/162 (42.59%), Postives = 86/162 (53.09%), Query Frame = 0 
Query:    6 AADKENYAPCEHKSRGLGGS---NNNSDSNKVNADINRLSPGAAKRKRGQPEQKEQRPPLRDITALPGLTPTFAHPPFDIASDAQQSFQD--QPMGNGNNCTTISATSARKKKTAATKGKEDINKKVSSSHGKKSADRGSA-SSNS----NIVRSSFLRPLR 158
            A DKEN  P  HKSRGLG +   N+     +  +    LSPGA+KRKRGQ EQ+E R PLRDIT +PGL PT A P FDIASD     QD      +    T+ S T+ +KK +   +  +D   K   +  K   DR +   SNS      +  SF RPLR
Sbjct:    5 AEDKENMDPYPHKSRGLGANDSFNSLHTGYQSRSGGKPLSPGASKRKRGQVEQRETRAPLRDITTMPGLAPTLAQPAFDIASDTAALPQDGVHRASSRPTATSASVTAHKKKSSKGNRAMKDTGNKRHYNGPKHDKDRKAVLKSNSRPPTESLPDSFARPLR 166
The following BLAST results are available for this feature:
BLAST of NO02G03200 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30247.11.500e-1442.59hypothetical protein Naga_100003g165 [Nannochlorop... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006971NSK006971Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G03200.1NO02G03200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100003g165gene320Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G03200.1NO02G03200.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G03200 ID=NO02G03200|Name=NO02G03200|organism=Nannochloropsis oceanica|type=gene|length=896bp
ACTCCAGCACTTCCTGTCACCGTCTCCACATAATAGCAGGCCTTCGCCAC
CGCCGCCGCAGCCACCTCCGCAGCCTTTCGTCCAGCTCTCCTTGACATCG
AATCACCATGAAAATGAGCAGCGCCGCCGACAAGGAGAACTATGCCCCCT
GCGAACACAAAAGCCGCGGCTTGGGCGGTAGCAACAACAATAGTGATAGC
AATAAAGTCAATGCTGACATCAACAGACTTTCCCCCGGGGCGGCGAAACG
CAAGCGCGGGCAGCCGGAGCAGAAGGAGCAGCGTCCACCCCTTCGCGACA
TAACAGCCCTGCCTGGCCTCACGCCAACCTTTGCCCACCCCCCTTTTGAC
ATCGCCTCCGACGCGCAGCAGTCATTTCAAGACCAACCTATGGGAAACGG
CAACAATTGCACCACCATTTCGGCGACTTCGGCGCGAAAGAAGAAGACGG
CTGCCACCAAGGGCAAGGAGGATATCAACAAAAAGGTATCATCCAGCCAC
GGCAAGAAGAGTGCTGACAGGGGTAGTGCAAGCAGCAACAGCAATATTGT
TCGTTCATCTTTCTTGCGACCACTGCGTTAAAATAAACTAAAAAAAAAAG
TGTGTGTGTATGGATTGCGTTTTTTTGGGTCTATTTTTGCCATGCTGCTT
GAATTATAAATGTCCCTGCTTCGGTCCATGATATCGAGTACCACGCCTTT
AAGTACGCGGCAGCATGCCGACAAGAAAGTAGACACAAAAATGTACCTAA
CCGAGTGATGGTGAGACTAAAGAGACTGCGAAGATAAAAAGTAGAGAGGC
GCCATTTGCATATTGGAGAGATGCAGGAGGAAAACTACACATAAGAAACC
TTGCATGTAATTGAGAAGGCGACATTGGTTGCACACTTGCATGGCG
back to top

protein sequence of NO02G03200.1

>NO02G03200.1-protein ID=NO02G03200.1-protein|Name=NO02G03200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=158bp
MKMSSAADKENYAPCEHKSRGLGGSNNNSDSNKVNADINRLSPGAAKRKR
GQPEQKEQRPPLRDITALPGLTPTFAHPPFDIASDAQQSFQDQPMGNGNN
CTTISATSARKKKTAATKGKEDINKKVSSSHGKKSADRGSASSNSNIVRS
SFLRPLR*
back to top
Synonyms
Publications