NO02G02990, NO02G02990 (gene) Nannochloropsis oceanica

Overview
NameNO02G02990
Unique NameNO02G02990
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2002
Alignment locationchr2:803282..805283 -

Link to JBrowse

Properties
Property NameValue
DescriptionRegulator of chromosome condensation-like protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:803282..805283 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009091RCC1/BLIP-II
IPR000408Reg_chr_condens
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO02G02990 vs. NCBI_GenBank
Match: XP_005854032.1 (phosphatidylinositide phosphatase sac1 [Nannochloropsis gaditana CCMP526] >EKU22332.1 phosphatidylinositide phosphatase sac1 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 628.6 bits (1620), Expect = 1.400e-176
Identity = 305/438 (69.63%), Postives = 345/438 (78.77%), Query Frame = 0
Query:    1 MRAFLHHKRRPLALFQAKARWLSTATGPGETTXXXXXXXXXXXXXXXXTTRVFTWGQGTEGQLGHFPIQKSGITGAYIELSPRELRKEGSKDEQVKKQHNPWGFVDLAMGLNYSAGVTADGRLYTWGEGNYHKLGHGDVKPVLRPKLVEALKDIQIVKVACGDFHTAAVDAEGQLWTWGWGGSLFGGIGGLGHGDEIEQPRPKLVKGLLDYGCRVGSVACGEKHTLILTDDGEVLTAGNGEYGRLGNGGSSDHPVPEPVDFFDEKTDIVEVAAGHAFNLVLTREGRVFTWGRNEQGQLGLGGGISMDVYSMEAVPLIIEALQDKKIARIAAGHSHSAAVTEAGELYMWGMKVYLEPHHIKVGETGMEKVSLLSCGGSHTAVVTEGSGHLHTFGKGSSLCLGHGGKSYTPHPKLVADGLGGRTVVKVASGHRHMGVITD 439
            MRA L  + R LA+ QAK R +       ++T                +TRVF WGQGTEGQLGH PIQKS +TGAY+ELSPRELR +  +D+Q  ++HNPWGFVDLA GLNYSAGVT DG+LYTWG+G+ HKLGHGD KPV RP+ VEAL+D++IVKVACGDFHTAA+D +G+LWTWGWGGSLFGGIGGLGHGDE EQPRPK+V+ L+DYGCRVGSVACGEKHTLILTDDGEVLTAGNGEYGRLGNGGSSDH VPEPV+ FDEKT+IVEVAAGHAFNLVLT++G++FTWGRNEQGQLGLGGGISMDVYSMEAVPL++EAL+ KK+  +AAGHSHSAAVTE GELYMWGMK++LE                                 L TFGKGSSLCLGHG +SYTPHPKLVADGL GR VVKVA GHRHM VITD
Sbjct:  587 MRALLQQRCRRLAVAQAKLRGVPAVARVRQST-TFSTLSATSSHTIVPSTRVFAWGQGTEGQLGHSPIQKSALTGAYVELSPRELRLDTEQDQQKIEKHNPWGFVDLAAGLNYSAGVTEDGKLYTWGDGSNHKLGHGDSKPVYRPRQVEALQDVKIVKVACGDFHTAAIDEDGRLWTWGWGGSLFGGIGGLGHGDEAEQPRPKVVRSLVDYGCRVGSVACGEKHTLILTDDGEVLTAGNGEYGRLGNGGSSDHGVPEPVELFDEKTNIVEVAAGHAFNLVLTQDGKIFTWGRNEQGQLGLGGGISMDVYSMEAVPLLVEALESKKVVHVAAGHSHSAAVTEEGELYMWGMKIHLE--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXHQLFTFGKGSSLCLGHGTRSYTPHPKLVADGLAGRGVVKVACGHRHMAVITD 1021          
BLAST of NO02G02990 vs. NCBI_GenBank
Match: EWM30371.1 (regulator of chromosome condensation -like protein [Nannochloropsis gaditana])

HSP 1 Score: 628.6 bits (1620), Expect = 1.400e-176
Identity = 305/438 (69.63%), Postives = 345/438 (78.77%), Query Frame = 0
Query:    1 MRAFLHHKRRPLALFQAKARWLSTATGPGETTXXXXXXXXXXXXXXXXTTRVFTWGQGTEGQLGHFPIQKSGITGAYIELSPRELRKEGSKDEQVKKQHNPWGFVDLAMGLNYSAGVTADGRLYTWGEGNYHKLGHGDVKPVLRPKLVEALKDIQIVKVACGDFHTAAVDAEGQLWTWGWGGSLFGGIGGLGHGDEIEQPRPKLVKGLLDYGCRVGSVACGEKHTLILTDDGEVLTAGNGEYGRLGNGGSSDHPVPEPVDFFDEKTDIVEVAAGHAFNLVLTREGRVFTWGRNEQGQLGLGGGISMDVYSMEAVPLIIEALQDKKIARIAAGHSHSAAVTEAGELYMWGMKVYLEPHHIKVGETGMEKVSLLSCGGSHTAVVTEGSGHLHTFGKGSSLCLGHGGKSYTPHPKLVADGLGGRTVVKVASGHRHMGVITD 439
            MRA L  + R LA+ QAK R +       ++T                +TRVF WGQGTEGQLGH PIQKS +TGAY+ELSPRELR +  +D+Q  ++HNPWGFVDLA GLNYSAGVT DG+LYTWG+G+ HKLGHGD KPV RP+ VEAL+D++IVKVACGDFHTAA+D +G+LWTWGWGGSLFGGIGGLGHGDE EQPRPK+V+ L+DYGCRVGSVACGEKHTLILTDDGEVLTAGNGEYGRLGNGGSSDH VPEPV+ FDEKT+IVEVAAGHAFNLVLT++G++FTWGRNEQGQLGLGGGISMDVYSMEAVPL++EAL+ KK+  +AAGHSHSAAVTE GELYMWGMK++LE                                 L TFGKGSSLCLGHG +SYTPHPKLVADGL GR VVKVA GHRHM VITD
Sbjct:    1 MRALLQQRCRRLAVAQAKLRGVPAVARVRQST-TFSTLSATSSHTIVPSTRVFAWGQGTEGQLGHSPIQKSALTGAYVELSPRELRLDTEQDQQKIEKHNPWGFVDLAAGLNYSAGVTEDGKLYTWGDGSNHKLGHGDSKPVYRPRQVEALQDVKIVKVACGDFHTAAIDEDGRLWTWGWGGSLFGGIGGLGHGDEAEQPRPKVVRSLVDYGCRVGSVACGEKHTLILTDDGEVLTAGNGEYGRLGNGGSSDHRVPEPVELFDEKTNIVEVAAGHAFNLVLTQDGKIFTWGRNEQGQLGLGGGISMDVYSMEAVPLLVEALESKKVVHVAAGHSHSAAVTEEGELYMWGMKIHLE--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXHQLFTFGKGSSLCLGHGTRSYTPHPKLVADGLAGRGVVKVACGHRHMAVITD 435          
BLAST of NO02G02990 vs. NCBI_GenBank
Match: CCA14713.1 (regulator of chromosome condensation (RCC1)like protein putative [Albugo laibachii Nc14])

HSP 1 Score: 364.0 bits (933), Expect = 6.500e-97
Identity = 178/390 (45.64%), Postives = 254/390 (65.13%), Query Frame = 0
Query:   52 VFTWGQGTEGQLGHFPIQKSGITGAYIELSPRELRKEGSKDEQVKKQHNPWGFVDLAMGLNYSAGVTADGRLYTWGEGNYHKLGHG----DVKPVLRPKLVEALKDIQIVKVACGDFHTAAVDAEGQLWTWGWGGSLFGGIGGLGHGDEIEQPRPKLVKGLLDYGCRVGSVACGEKHTLILTDDGEVLTAGNGEYGRLGNGGSSDHPVPEPVDFFDEKTDIVEVAAGHAFNLVLTREGRVFTWGRNEQGQLGLGGGISMDVYSMEAVPLIIEALQDKKIARIAAGHSHSAAVTEAGELYMWGMKVYLEPHHIKVGETGMEKVSLLSCGGSHTAVVTEGSGHLHTFGKGSSLCLGHGGKSYTPHPKLVADGLGGRTVVKVASGHRHMGVIT 438
            VFTWG GT+GQLGH   +K+GI  +Y ELSPR L     K+              L  G  +SA +  +G+LYTWG   YH+LGHG    D++ +  P++V+AL+ I+IV ++CG++HT AVD EG+L+TWGWGGS   G G LGH    ++  P+LV+ L+D G  V SV CGE HT+ LT DGE+   GNGEYGRLGNG S +  VPEPV++F ++ +I  ++AG  F   +T  G V++WG N   QLGLGGG+++D Y+ME +P+++EAL +  +A+++AG+ H+AAVT  G+++MWG K++LEPH + + +   E +  + CG  +TA ++  SG+L TFGKG S CLGHG +     P LV + L    VV +  G+ HMG +T
Sbjct:    7 VFTWGTGTQGQLGHGSFEKTGIRSSYEELSPRILETFEGKN-----------IAKLDFGATHSAAIDKEGKLYTWGSNEYHQLGHGSSNQDIQSI--PRVVDALRGIKIVDISCGEYHTGAVDEEGKLFTWGWGGSTMKGSGALGHAGGEDESIPRLVRTLVDQGVPVKSVECGELHTVALTKDGEIWAWGNGEYGRLGNGASDNFEVPEPVEYFADE-NIASISAGRDFTFAITEHGEVYSWGINSHSQLGLGGGLTVDYYNMETIPVVVEALSNVNVAQVSAGYDHAAAVTNDGKMFMWGAKLWLEPHEMTILKD--ETIISVQCGRYYTAALS-ASGNLFTFGKGHSNCLGHGERKTQLQPLLV-ESLNRYNVVSMTCGYSHMGALT 378          
BLAST of NO02G02990 vs. NCBI_GenBank
Match: CCI39952.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 357.1 bits (915), Expect = 8.000e-95
Identity = 174/390 (44.62%), Postives = 256/390 (65.64%), Query Frame = 0
Query:   52 VFTWGQGTEGQLGHFPIQKSGITGAYIELSPRELRKEGSKDEQVKKQHNPWGFVDLAMGLNYSAGVTADGRLYTWGEGNYHKLGHG----DVKPVLRPKLVEALKDIQIVKVACGDFHTAAVDAEGQLWTWGWGGSLFGGIGGLGHGDEIEQPRPKLVKGLLDYGCRVGSVACGEKHTLILTDDGEVLTAGNGEYGRLGNGGSSDHPVPEPVDFFDEKTDIVEVAAGHAFNLVLTREGRVFTWGRNEQGQLGLGGGISMDVYSMEAVPLIIEALQDKKIARIAAGHSHSAAVTEAGELYMWGMKVYLEPHHIKVGETGMEKVSLLSCGGSHTAVVTEGSGHLHTFGKGSSLCLGHGGKSYTPHPKLVADGLGGRTVVKVASGHRHMGVIT 438
            VFTWG GT+GQLGH   +K+GI  +Y EL P  +  E  + + V K         L  G  +SA +  +G+LYTWG   YH+LGHG    D++ V  P+LV+AL+ I+IV ++CG++HTAAVD EG+L+TWGWGGS   G G LGH    ++  P+LV+ L+D G  + SV CGE HT+ LT DGE+   GNGEYGRLGNG S +  VPEP+++F ++ ++  ++AG  F   +T  G V++WG N   QLGLGGG+++D Y+ME +P+++EAL +  + +++AG+ H+AAVT+ G+++MWG K++LEPH + + +   E++  + CG  +TA ++  +G L+TFGKG S CLGHG +     P  + + L    VV V  G+ HMG +T
Sbjct:   34 VFTWGTGTQGQLGHGSFEKTGIRNSYEELFP--ILLESFEGKSVAK---------LDFGAAHSAAIDEEGKLYTWGSNEYHQLGHGSSNQDIECV--PRLVDALEGIKIVDISCGEYHTAAVDEEGKLFTWGWGGSTLKGSGALGHAGGEDESIPRLVRTLVDQGVPIKSVECGELHTVALTKDGEIWAWGNGEYGRLGNGASDNFEVPEPIEYFADQ-NVASISAGRDFTFAITEHGEVYSWGINSHSQLGLGGGLTVDYYNMETIPVVVEALSNLNVTQVSAGYDHAAAVTKDGKMFMWGAKLWLEPHEMTILQD--EEIISVKCGRYYTAALS-STGKLYTFGKGHSSCLGHGERKTLLQPAQI-ESLDRYNVVSVTCGYSHMGALT 405          
BLAST of NO02G02990 vs. NCBI_GenBank
Match: XP_009538867.1 (hypothetical protein PHYSODRAFT_533148, partial [Phytophthora sojae] >EGZ06006.1 hypothetical protein PHYSODRAFT_533148, partial [Phytophthora sojae])

HSP 1 Score: 335.5 bits (859), Expect = 2.500e-88
Identity = 167/386 (43.26%), Postives = 232/386 (60.10%), Query Frame = 0
Query:   52 VFTWGQGTEGQLGHFPIQKSGITGAYIELSPRELRKEGSKDEQVKKQHNPWGFVDLAMGLNYSAGVTADGRLYTWGEGNYHKLGHGDVKPV-LRPKLVEALKDIQIVKVACGDFHTAAVDAEGQLWTWGWGGSLFGGIGGLGHGDEIEQPRPKLVKGLLDYGCRVGSVACGEKHTLILTDDGEVLTAGNGEYGRLGNGGSSDHPVPEPVDFFDEKTDIVEVAAGHAFNLVLTREGRVFTWGRNEQGQLGLGGGISMDVYSMEAVPLIIEALQDKKIARIAAGHSHSAAVTEAGELYMWGMKVYLEPHHIKVGETGMEKVSLLSCGGSHTAVVTEGSGHLHTFGKGSSLCLGHGGKSYTPHPKLVADGLGGRTVVKVASGHRHMGVI 437
            V+TWG GT GQLGH P+ KSGI  AY EL+P+ L     K               +  G ++SA +  DG+LY WG   Y KLG G+   +   P+ VEALK ++IV V+CGD+ TAAVDA+G++++WGWGGS   G GGLGH    ++P P+L+  L+D G  + +V CGE HT+ L+ DGE+   GNGEYGRLGNG S    VPEP++FF  K ++V +AAG  F+  LT  G +++WG N Q QLG+GGG++MDVY++E++P+++EA     + +IAAG+ H+AAVT+ G LYMWG K+++EPH +       E                        FGKGSS CLGHG +     P  + + L    +  ++ G  HMG I
Sbjct:   44 VYTWGNGTLGQLGHGPVVKSGIRNAYEELTPKLLEAFEGK-----------AITHVEFGASHSAAIDEDGKLYVWGSNEYSKLGLGESSEMETLPREVEALKGVKIVDVSCGDYFTAAVDADGKMYSWGWGGSTMKGAGGLGHAGGKDEPTPRLLTTLVDQGVPILTVECGEFHTVALSKDGEIWAWGNGEYGRLGNGESDTCEVPEPIEFF-SKDNVVSIAAGRDFSFALTDNGELYSWGGNSQNQLGIGGGLAMDVYNIESIPVLVEAFNGLSVKQIAAGYDHAAAVTDDGRLYMWGSKIWIEPHEMTAVN---EXXXXXXXXXXXXXXXXXXXXXXXXFGKGSSNCLGHGDRKNQLQPVQI-EALADVNITSISCGDYHMGAI 413          
BLAST of NO02G02990 vs. NCBI_GenBank
Match: XP_008895266.1 (hypothetical protein PPTG_04737 [Phytophthora parasitica INRA-310] >ETI38639.1 hypothetical protein F443_15713 [Phytophthora parasitica P1569] >ETL32273.1 hypothetical protein L916_15145 [Phytophthora parasitica] >ETL85514.1 hypothetical protein L917_14976 [Phytophthora parasitica] >ETM38668.1 hypothetical protein L914_15110 [Phytophthora parasitica] >ETN19413.1 hypothetical protein PPTG_04737 [Phytophthora parasitica INRA-310] >ETO67394.1 hypothetical protein F444_15691 [Phytophthora parasitica P1976] >ETP08547.1 hypothetical protein F441_15532 [Phytophthora parasitica CJ01A1] >ETP36837.1 hypothetical protein F442_15286 [Phytophthora parasitica P10297] >KUF80243.1 E3 ubiquitin-protein ligase HERC2 [Phytophthora nicotianae] >KUF90074.1 E3 ubiquitin-protein ligase HERC2 [Phytophthora nicotianae])

HSP 1 Score: 332.0 bits (850), Expect = 2.800e-87
Identity = 172/387 (44.44%), Postives = 231/387 (59.69%), Query Frame = 0
Query:   52 VFTWGQGTEGQLGHFPIQKSGITGAYIELSPRELRK-EGSKDEQVKKQHNPWGFVDLAMGLNYSAGVTADGRLYTWGEGNYHKLGHGDVKPVLR-PKLVEALKDIQIVKVACGDFHTAAVDAEGQLWTWGWGGSLFGGIGGLGHGDEIEQPRPKLVKGLLDYGCRVGSVACGEKHTLILTDDGEVLTAGNGEYGRLGNGGSSDHPVPEPVDFFDEKTDIVEVAAGHAFNLVLTREGRVFTWGRNEQGQLGLGGGISMDVYSMEAVPLIIEALQDKKIARIAAGHSHSAAVTEAGELYMWGMKVYLEPHHIKVGETGMEKVSLLSCGGSHTAVVTEGSGHLHTFGKGSSLCLGHGGKSYTPHPKLVADGLGGRTVVKVASGHRHMGVI 437
            V+TWG GT GQLGH P+ KSGI  AY EL+P+ +   EG    QV+             G ++SA +  DGRLY WG   Y KLG G+   +   P  VEALK I+IV V+CGD+ TAAVD +G++++WGWGGS   G GGLGH    ++P P+L+  L+D G  + +V CGE HT+ LT DGE+   GNGEYGRLGNG S    VPEP++FF  K ++V +AAG  F+  LT +G +++WG N Q QLG+GGG++MDVY++E++P+++EA    ++ +IAAG+ H+AAVTE G LYMWG K+++EPH                                    KGSS CLGHG +     P L    L G  +  V+ G  HMG I
Sbjct:   39 VYTWGNGTLGQLGHGPVVKSGIRNAYEELTPKLVEALEGKAIAQVE------------FGASHSAAIDEDGRLYVWGSNEYSKLGLGESSEMEELPCEVEALKGIKIVDVSCGDYFTAAVDEDGKMYSWGWGGSTMKGAGGLGHAGGKDEPTPRLLTTLVDQGAPMATVECGEFHTVALTKDGEIWAWGNGEYGRLGNGESDTCEVPEPIEFF-SKDNVVSIAAGRDFSFALTDKGELYSWGGNSQNQLGIGGGLAMDVYNIESIPVLVEAFNGLQVKQIAAGYDHAAAVTEDGRLYMWGAKIWIEPHE---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGSSNCLGHGDRKNQLQP-LQIQALAGVNITSVSCGDYHMGAI 408          
BLAST of NO02G02990 vs. NCBI_GenBank
Match: ETK78839.1 (hypothetical protein L915_15254 [Phytophthora parasitica])

HSP 1 Score: 327.4 bits (838), Expect = 6.800e-86
Identity = 172/388 (44.33%), Postives = 231/388 (59.54%), Query Frame = 0
Query:   52 VFTWGQGTEGQLGHFPIQKSGITGAYIELSPRELRK-EGSKDEQVKKQHNPWGFVDLAMGLNYSAGVTADGRLYTWGEGNYHKLGHGDVKPVLR-PKLVEALKDIQIVKVAC-GDFHTAAVDAEGQLWTWGWGGSLFGGIGGLGHGDEIEQPRPKLVKGLLDYGCRVGSVACGEKHTLILTDDGEVLTAGNGEYGRLGNGGSSDHPVPEPVDFFDEKTDIVEVAAGHAFNLVLTREGRVFTWGRNEQGQLGLGGGISMDVYSMEAVPLIIEALQDKKIARIAAGHSHSAAVTEAGELYMWGMKVYLEPHHIKVGETGMEKVSLLSCGGSHTAVVTEGSGHLHTFGKGSSLCLGHGGKSYTPHPKLVADGLGGRTVVKVASGHRHMGVI 437
            V+TWG GT GQLGH P+ KSGI  AY EL+P+ +   EG    QV+             G ++SA +  DGRLY WG   Y KLG G+   +   P  VEALK I+IV V+C GD+ TAAVD +G++++WGWGGS   G GGLGH    ++P P+L+  L+D G  + +V CGE HT+ LT DGE+   GNGEYGRLGNG S    VPEP++FF  K ++V +AAG  F+  LT +G +++WG N Q QLG+GGG++MDVY++E++P+++EA    ++ +IAAG+ H+AAVTE G LYMWG K+++EPH                                    KGSS CLGHG +     P L    L G  +  V+ G  HMG I
Sbjct:   39 VYTWGNGTLGQLGHGPVVKSGIRNAYEELTPKLVEALEGKAIAQVE------------FGASHSAAIDEDGRLYVWGSNEYSKLGLGESSEMEELPCEVEALKGIKIVDVSCGGDYFTAAVDEDGKMYSWGWGGSTMKGAGGLGHAGGKDEPTPRLLTTLVDQGAPMATVECGEFHTVALTKDGEIWAWGNGEYGRLGNGESDTCEVPEPIEFF-SKDNVVSIAAGRDFSFALTDKGELYSWGGNSQNQLGIGGGLAMDVYNIESIPVLVEAFNGLQVKQIAAGYDHAAAVTEDGRLYMWGAKIWIEPHE---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGSSNCLGHGDRKNQLQP-LQIQALAGVNITSVSCGDYHMGAI 409          
BLAST of NO02G02990 vs. NCBI_GenBank
Match: XP_024581141.1 (FOG: RCC1 domain [Plasmopara halstedii] >CEG44772.1 FOG: RCC1 domain [Plasmopara halstedii])

HSP 1 Score: 327.4 bits (838), Expect = 6.800e-86
Identity = 168/386 (43.52%), Postives = 235/386 (60.88%), Query Frame = 0
Query:   52 VFTWGQGTEGQLGHFPIQKSGITGAYIELSPRELRKEGSKDEQVKKQHNPWGFVDLAMGLNYSAGVTADGRLYTWGEGNYHKLGHGDVKPV-LRPKLVEALKDIQIVKVACGDFHTAAVDAEGQLWTWGWGGSLFGGIGGLGHGDEIEQPRPKLVKGLLDYGCRVGSVACGEKHTLILTDDGEVLTAGNGEYGRLGNGGSSDHPVPEPVDFFDEKTDIVEVAAGHAFNLVLTREGRVFTWGRNEQGQLGLGGGISMDVYSMEAVPLIIEALQDKKIARIAAGHSHSAAVTEAGELYMWGMKVYLEPHHIKVGETGMEKVSLLSCGGSHTAVVTEGSGHLHTFGKGSSLCLGHGGKSYTPHPKLVADGLGGRTVVKVASGHRHMGVI 437
            V+TWG GT GQLGH P+ KSG+  AY EL+P+ +  E  + + +        FVD   G ++SA +   G+LY WG   Y KLG G+   + + P+ VEAL+ ++IV V+CGD+ TAAVD +G++++WGWGGS   G GGLGH    ++P P+L+  L+D G  + +V CGE HT+ LT DGE+   GNGEYGRLGNG S    VPEP++FF E  +IV +AAG  F+  LT +G +++WG N   QLG+GGG++MDVY++E++P++IEA     + +IAAG+ H+AAVT  G LYMWG K+++EPH +       +                        FGKGSS CLGHG +     P  +   L G  +  V+ G  HMG I
Sbjct:   41 VYTWGNGTLGQLGHGPVIKSGMRNAYEELTPKLV--EALEGKAIT-------FVD--FGASHSAAIDETGKLYVWGSNEYGKLGLGESSEIEVLPREVEALRGVKIVDVSCGDYFTAAVDEDGKMYSWGWGGSTMKGAGGLGHAGGKDEPLPRLLTTLVDQGVPMATVECGEFHTVALTKDGEIWAWGNGEYGRLGNGESDTCEVPEPIEFFSE-DNIVSIAAGRDFSFALTDKGELYSWGGNSHNQLGIGGGLAMDVYNIESIPVLIEAFDGVTVKQIAAGYDHAAAVTADGRLYMWGAKIWIEPHEMTAVN---DHNXXXXXXXXXXXXXXXXXXXXXXFGKGSSNCLGHGDRKNQLQPVHI-QALAGVQITSVSCGDYHMGAI 410          
BLAST of NO02G02990 vs. NCBI_GenBank
Match: XP_002905534.1 (regulator of chromosome condensation (RCC1)-like protein [Phytophthora infestans T30-4] >EEY68375.1 regulator of chromosome condensation (RCC1)-like protein [Phytophthora infestans T30-4])

HSP 1 Score: 325.9 bits (834), Expect = 2.000e-85
Identity = 165/386 (42.75%), Postives = 227/386 (58.81%), Query Frame = 0
Query:   52 VFTWGQGTEGQLGHFPIQKSGITGAYIELSPRELRKEGSKDEQVKKQHNPWGFVDLAMGLNYSAGVTADGRLYTWGEGNYHKLGHGDVKPV-LRPKLVEALKDIQIVKVACGDFHTAAVDAEGQLWTWGWGGSLFGGIGGLGHGDEIEQPRPKLVKGLLDYGCRVGSVACGEKHTLILTDDGEVLTAGNGEYGRLGNGGSSDHPVPEPVDFFDEKTDIVEVAAGHAFNLVLTREGRVFTWGRNEQGQLGLGGGISMDVYSMEAVPLIIEALQDKKIARIAAGHSHSAAVTEAGELYMWGMKVYLEPHHIKVGETGMEKVSLLSCGGSHTAVVTEGSGHLHTFGKGSSLCLGHGGKSYTPHPKLVADGLGGRTVVKVASGHRHMGVI 437
            V+TWG GT GQLGH  + KSGI  AY EL+P+       K               +  G ++SA +  +G+LY WG   Y KLG G+   +   P+ VEALK I+IV V+CGD+ TAAVD +G++++WGWGGS   G GGLGH    ++P P+L+  L+D G  + +V CGE HT+ LT DGE+   GNGEYGRLGNG S    VPEP++FF  K ++V +AAG  F+  LT +G +++WG N Q QLG+GGG++MDVY++E++P+++EA     + +IAAG+ H+AAVTE G LYMWG K+++EPH +                                  KGSS CLGHG +     P  +   L G  +  V+ G  HMG I
Sbjct:   71 VYTWGNGTLGQLGHGSVIKSGIRSAYEELTPKLTEALEGK-----------AITHVEFGASHSAAIDEEGKLYVWGSNEYSKLGLGESSEMETLPREVEALKGIKIVDVSCGDYFTAAVDEDGKMYSWGWGGSTMKGAGGLGHAGGKDEPTPRLLTTLVDQGVPIATVECGEFHTVALTKDGEIWAWGNGEYGRLGNGESDTCEVPEPIEFF-SKDNVVSIAAGRDFSFALTDKGELYSWGGNSQNQLGIGGGLAMDVYNIESIPVLVEAFNGLLVKQIAAGYDHAAAVTEDGRLYMWGAKIWIEPHEM---TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGSSNCLGHGDRKNQLQPVKI-QALAGVNITSVSCGDYHMGAI 440          
BLAST of NO02G02990 vs. NCBI_GenBank
Match: XP_009034037.1 (hypothetical protein AURANDRAFT_59868 [Aureococcus anophagefferens] >EGB11694.1 hypothetical protein AURANDRAFT_59868 [Aureococcus anophagefferens])

HSP 1 Score: 321.6 bits (823), Expect = 3.700e-84
Identity = 175/390 (44.87%), Postives = 233/390 (59.74%), Query Frame = 0
Query:   54 TWGQGTEGQLGHFPIQKSGITGAYIELSPRELRKEGSKDEQVKKQHNPWGFV--DLAMGLNYSAGVTADGRLYTWGEGNYHKLGHGDVKPVLRPKLVEALKDIQIVKVACGDFHTAAVDAEGQLWTWGWGGSLFGGIGGLGHGDEIEQPRPKLVKGLLDYGCRVGSVACGEKHTLILTDDGEVLTAGNGEYGRLGNGGSSDHPVPEPVDFFDEKTDIVEVAAGHAFNLVLTREGRVFTWGRNEQGQLGLGGGISMDVYSMEAVPLIIEALQDKKI--ARIAAGHSHSAAVTEAGELYMWGMKVYLEP--HHIKV-GETGMEKVSLLSCGGSHTAVVTEGSGHLHTFGKGSSLCLGHGGKSYTPHPKLVADGLGGRTVVKVASGHRHMGVI 437
            TWG+GTEGQLGH P   SG+   Y EL+PR+L                 GFV  D+A G N++  V  DG +++WG+ ++ K GHGD      P  V AL  + +V VACG+ H+ A+D++G++++WGWGGS   G G LG GD   +  P  V G L+  C V S+  GE H++ LTDDGEV T G GE+GR GNGGS D   PEPV   D+  D+V++ AG AF +     G V  WGRN+QGQLGLGGG++MDVY++E +P  I+      +    +AAGHSH+A VT +G L  WG K  LEP  H  +  G  G  +   + CGG++T   T   G L++FG GSS CLGHG K   PHPK VA  L G  + K++ G+RH  V+
Sbjct:   31 TWGEGTEGQLGHTPFALSGVLQQYAELAPRQLE----------------GFVLRDVACGTNHTLAVDGDGAVWSWGKSDFGKCGHGDDADCKAPARVAALAGVDVVAVACGESHSLALDSDGRVYSWGWGGSWLSGGGQLGSGDRGHRYAPAPVAGALEGAC-VASLGAGEGHSVFLTDDGEVWTCGAGEHGRNGNGGSGDVLAPEPVAALDD-VDVVQLEAGSAFTICRDSTGVVRVWGRNDQGQLGLGGGLAMDVYALEDLPRPIDLPDGSPLTAVHVAAGHSHAAVVTPSGALLQWGAKNALEPAAHVFECDGAGGAPEPVAVHCGGAYTLAET-ADGDLYSFGAGSSKCLGHGDKQRHPHPKKVA-ALDGFRLAKLSCGYRHCAVL 400          
The following BLAST results are available for this feature:
BLAST of NO02G02990 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005854032.11.400e-17669.63phosphatidylinositide phosphatase sac1 [Nannochlor... [more]
EWM30371.11.400e-17669.63regulator of chromosome condensation -like protein... [more]
CCA14713.16.500e-9745.64regulator of chromosome condensation (RCC1)like pr... [more]
CCI39952.18.000e-9544.62unnamed protein product [Albugo candida][more]
XP_009538867.12.500e-8843.26hypothetical protein PHYSODRAFT_533148, partial [P... [more]
XP_008895266.12.800e-8744.44hypothetical protein PPTG_04737 [Phytophthora para... [more]
ETK78839.16.800e-8644.33hypothetical protein L915_15254 [Phytophthora para... [more]
XP_024581141.16.800e-8643.52FOG: RCC1 domain [Plasmopara halstedii] >CEG44772.... [more]
XP_002905534.12.000e-8542.75regulator of chromosome condensation (RCC1)-like p... [more]
XP_009034037.13.700e-8444.87hypothetical protein AURANDRAFT_59868 [Aureococcus... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006947NSK006947Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G02990.1NO02G02990.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574523gene_888Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100026g4gene300Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G02990.1NO02G02990.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G02990 ID=NO02G02990|Name=NO02G02990|organism=Nannochloropsis oceanica|type=gene|length=2002bp
ATGCGGGCCTTTCTACATCACAAACGTCGGCCGCTGGCGCTCTTCCAGgt
atcaaggagaagaagggggaggacaaaggttccacggtggggatgaagat
taaagataaagcaaagatcacgccactagcccatgcaaatatctagaagg
cgtaagattacctattgacatcacacccgcatcacccgcatcacagGCAA
AGGCACGATGGCTGTCAACAGCTACAGGTCCAGGTGAGACGACGGCACCT
GCAGCTTCCTCCACATCCTCGTCCTCCACCAACGCTCCTCCCACGACACG
AGTCTTCACTTGGGGCCAAGGGACTGAGGGGCAGCTTGGACACTTTCCCA
TCCAAAAAAGTGGCATCACAGGTGCTTACATCGAGCTGTCACCACGAGAG
TTGCGCAAGGAAGGCAGCAAAGACGAGCAAGTAAAGAAGCAGCACAACCC
CTGGGGGTTCGTGGATCTGGCGATGGGACTTAATTACTCTGCAGGTGTGA
CGGCAGATGGGAGGCTCTACACGTGGGGGGAAGGTAACTATCACAAGCTC
GGCCACGGTGATGTAAAGCCAGTGCTTCGACCTAAGTTGGTGGAGGCGCT
CAAGGACATCCAAATTGTCAAGGTGGCCTGCGGgtacgtgctgtgtgatg
aagtgtggggtggcgggatggtgacggtaagacagaggaatacctgaatg
ttatttttccttgcccgtgtactatataccatggatgaggatgactttgt
tcctgtcagcatgacttgtcgtccttcattttccattcttcccccacccc
aacctgctccccgcttccctcctgccagCGATTTCCACACAGCAGCAGTT
GACGCCGAGGGGCAACTCTGGACCTGGGGCTGGGGGGGCTCCCTTTTCGG
GGGAATTGGCGGGTTAGGGCATGGCGACGAGATTGAGCAACCGCGCCCGA
AACTGGTGAAGGGCCTGTTGGACTACGGGTGTCGAGTGGGTAGTGTGGCA
TGCGGGGAGAAGCACACATTGATTCTGACGGATGATGGGGAGGTGCTGAC
GGCGGGGAATGGAGAGTACGGACGGCTGGGCAACGGAGGGAGCAGTGATC
ACCCCGTGCCGGAGCCGGTGGACTTTTTTGACGAGAAgtgagttaaggga
tggagaggaagagagaggggggtgaaggagatgtctcacggggggaatga
tatatataactttcgaagtacccttcattatatgtattcagtgaataatc
atttttgaatttatagatattctcatttcttaacacgctctttccaaaca
tagGACGGACATAGTGGAAGTAGCGGCGGGGCATGCCTTCAACTTGGTGT
TGACGCGAGAGGGGAGGGTTTTCACTTGGGGCCGAAACGAGCAAGGCCAG
gtgggaacgatgggacggaggcgagcagggaaaatgcagatctgcggggt
gttcaaagacgaagtagacaagcgtcgtatacttatggttgagtcttgca
cttaatttaaaaatcctaagacctcactcgtctccctcttcctttatctc
tttcccaaaaaaaactcgcctaccagCTCGGCCTCGGCGGGGGCATCAGC
ATGGACGTCTACTCAATGGAAGCTGTCCCTCTTATTATCGAGGCGCTGCA
AGACAAGAAGATCGCCCGCATCGCCGCCGGGCACTCCCACTCCGCCGCCG
TCACCGAGGCCGGCGAGCTGTACATGTGGGGAATGAAGGTCTACCTCGAG
CCCCACCACATCAAGGTCGGCGAGACAGGGATGGAAAAAGTAAGCCTGCT
GAGCTGTGGAGGAAGCCATACGGCTGTTGTGACAGAAGGGTCGGGGCACT
TGCACACGTTTGGGAAGGGCTCGTCGCTTTGCTTGGGGCACGGGGGGAAG
AGCTACACGCCGCACCCGAAGCTCGTGGCCGATGGCTTGGGGGGACGAAC
CGTGGTGAAGGTGGCGAGTGGCCATAGGCATATGGGGGTGATAACAGACT
AG
back to top

protein sequence of NO02G02990.1

>NO02G02990.1-protein ID=NO02G02990.1-protein|Name=NO02G02990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=439bp
MRAFLHHKRRPLALFQAKARWLSTATGPGETTAPAASSTSSSSTNAPPTT
RVFTWGQGTEGQLGHFPIQKSGITGAYIELSPRELRKEGSKDEQVKKQHN
PWGFVDLAMGLNYSAGVTADGRLYTWGEGNYHKLGHGDVKPVLRPKLVEA
LKDIQIVKVACGDFHTAAVDAEGQLWTWGWGGSLFGGIGGLGHGDEIEQP
RPKLVKGLLDYGCRVGSVACGEKHTLILTDDGEVLTAGNGEYGRLGNGGS
SDHPVPEPVDFFDEKTDIVEVAAGHAFNLVLTREGRVFTWGRNEQGQLGL
GGGISMDVYSMEAVPLIIEALQDKKIARIAAGHSHSAAVTEAGELYMWGM
KVYLEPHHIKVGETGMEKVSLLSCGGSHTAVVTEGSGHLHTFGKGSSLCL
GHGGKSYTPHPKLVADGLGGRTVVKVASGHRHMGVITD*
back to top
Synonyms
Publications