NO02G02940, NO02G02940 (gene) Nannochloropsis oceanica

Overview
NameNO02G02940
Unique NameNO02G02940
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2053
Alignment locationchr2:790951..793003 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:790951..793003 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036047F-box-like_dom_sf
IPR001810F-box_dom
Homology
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BLAST of NO02G02940 vs. NCBI_GenBank
Match: XP_005853741.1 (hypothetical protein NGA_0168202 [Nannochloropsis gaditana CCMP526] >EKU22622.1 hypothetical protein NGA_0168202 [Nannochloropsis gaditana CCMP526] >EWM30397.1 hypothetical protein Naga_100026g9 [Nannochloropsis gaditana])

HSP 1 Score: 654.1 bits (1686), Expect = 3.900e-184
Identity = 365/473 (77.17%), Postives = 394/473 (83.30%), Query Frame = 0 
Query:   74 GFVDVLRSMGSLTVSNAYDIREELRFLRRRRGKQEEAIVLSELAALASCLNELVVSTMTSNSGTGNPVXXXXXXXXXXXXXXXXXXXXXXXXGAVAVEPSRRSLVGMLSYEGLLPAFQHTAVPAPMAVLGDAALLHYCLEFLVEGRLEHRKQLGELALVCRQWRDLAQSERFWRPIVLQLFPRLSPTALDHDEEDPAAAGAASTTDASAATVAGVEANVAVAELGGGATGGVNDQTGPQAMVPDWYRKYLIQFGRCLFDRPVRQGPWHEGITLSFDLHDEQDGIRLFSSTGPIRFTGTTIPGITAMKLTGRRRRVTAPFSAASRDRKLGALTSIEELFQEGDSGEYSVAFTIRVTARDERTGKMALLFSSGKRTKRWVEPLGEDMGVPQGTLLVNQGWSRVTIPSTDLAMQMLTVFYVAPVEGQPETVDPAERLYSVLPLDCAFMLQCKTEDQEQIGRFILAALENGPSLECD 547
            GFVD+LRS+G LT++NA +IREELR LRRRRGKQEEA++LSELAALASCLNELV+             XXXXXXXXXXXXXXXXXXXXXXXX     EPSRR+L G+ SYEGL+P   H AVPAP   LGDAALLHYC +FLVEGRL++RKQLG+LALVCRQWRDLAQ++RFW+P+VLQLFPRLSP   DHDEED A   +    DA+A T A V+        G GA       T P      W+RKYLIQFGRCLFDRP+RQGPWHEGITLSFDLHDEQDG RLFSSTGPIRFTGTTIPGITAMKLTGRRRRVTAPFSAASRDR LG L+SIEELFQEGDS +Y V+FTIRVTARDERTGKMALLFSS KRTKRWVEPLGEDMGVPQGTLLVNQGWSRVTIPSTDLAMQMLTVFYVAPVEGQPET+  AERLYSVL LDCAFMLQCKTEDQEQIGRFILAALENGP +E D
Sbjct:  110 GFVDLLRSLGHLTLNNASEIREELRHLRRRRGKQEEAVMLSELAALASCLNELVM-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPSRRALAGLFSYEGLMPPIPHPAVPAPSTALGDAALLHYCFDFLVEGRLQYRKQLGDLALVCRQWRDLAQADRFWKPVVLQLFPRLSPALADHDEEDGA---SGPDPDAAALTEAAVD--------GAGAGASSEPSTSPGGRA-GWHRKYLIQFGRCLFDRPIRQGPWHEGITLSFDLHDEQDGTRLFSSTGPIRFTGTTIPGITAMKLTGRRRRVTAPFSAASRDRGLGNLSSIEELFQEGDSRDYPVSFTIRVTARDERTGKMALLFSSAKRTKRWVEPLGEDMGVPQGTLLVNQGWSRVTIPSTDLAMQMLTVFYVAPVEGQPETISAAERLYSVLTLDCAFMLQCKTEDQEQIGRFILAALENGPGVERD 569
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BLAST of NO02G02940 vs. NCBI_GenBank
Match: EWM22815.1 (hypothetical protein Naga_100437g2 [Nannochloropsis gaditana])

HSP 1 Score: 119.8 bits (299), Expect = 2.700e-23
Identity = 88/282 (31.21%), Postives = 128/282 (45.39%), Query Frame = 0 
Query:  223 RKQLGELALVCRQWRDLAQSERFWRPIVLQLFPRLSPTALDHDEEDPAAAGAASTTDASAATVAGVEANVAVAELGGGATGGVNDQTGPQAMVPDWYRKYLIQFGRCLFDRPVRQG-PWHEGITLSFDLHDEQDGIRLFSSTGPIRFTGTTIPGITAMKLTG-RRRRVTAPFSAASRDRKLGALTSIEELFQEGDSGEYSVAFTIRVTARDERTGKMALLFSSGKRTKRWVEPLGEDMG---VPQGTLLVNQGWSRVTIPS-TDLAMQMLTVFYVAPVEGQP 499
            R  L  L  V R WR  A  +RFWRPIV    P L                   T DA                               +   P  YR+  +++ RCL    V  G  WH  + LSF+++D QD +RLF ++GP+    +T  G+TA++LTG +R  V  PFSA SRD       +I          ++ V   +RV A D RTG  AL+++S  +TKR V+    +     +P+ +L V + WSR  + + T  A+++ T FYV+PV+  P
Sbjct:  268 RVNLAPLLTVARLWRATASQDRFWRPIVSWTLPTL-------------------TMDAKET----------------------------RTTKPFPYRQAFLRYARCLALPVVGDGEEWHAHVLLSFEIYDVQDSMRLFVASGPLEVIQSTESGLTALRLTGTKRSEVCRPFSAKSRDPVNKRFENISAYLCHSWRPDFPVGLRVRVVATDARTGTQALIYNSEPKTKRSVKDSTLNFWRRFLPRHSLFVWEAWSRWVLQNGTQEAVEISTSFYVSPVQKSP 502
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BLAST of NO02G02940 vs. NCBI_GenBank
Match: EWM22694.1 (hypothetical protein Naga_100340g3 [Nannochloropsis gaditana])

HSP 1 Score: 110.2 bits (274), Expect = 2.100e-20
Identity = 99/306 (32.35%), Postives = 143/306 (46.73%), Query Frame = 0 
Query:  197 APMAVLGDAALLHYCLEFLVEGR--LEHRKQLGELALVCRQWRDLAQSERFWRPIVLQLFPRLSPTALDHDEEDPAAAGAASTTDASAATVAGVEANVAVAELGGGATGGVNDQTGPQAMVPDWYRKYLIQFGRCLFDRPVRQG-PWHEGITLSFDLHDEQDGIRLFSSTGPIRFTGTTIPGITAMKLTG-RRRRVTAP-FSAASRDRKLGALTSIEELFQEGDSGEYSVAFTIRVTARDERTGKMALLFSSGKRTKRWVE-PLGE-DMGVPQGTL-LVNQGWSRVTIPSTDLAMQMLTV-FYVAP 494
            A ++ L    LLH    FL+      E R  L  L+LV R++  LA  E +WRP+   L P L+          P             A  AG          GGG  G             + +R YL+++G CL  R    G    +G +LSF++ D  DG+R+ S++GPIR       G T++++ G  RR V  P FSAASRD       S+E+ F  G   E+  A ++RVT  DERTG+MALL+S+ K      E PL   +  +P+G++      WS +  P+ D     +T+ F+V P
Sbjct:  167 ARLSALSSPDLLHMIFPFLLHRARPQEARAVLTTLSLVNRRFHALACWEEYWRPVAEGLLPVLAV---------PRRHSPRRQXXXXXARGAGE---------GGGRRG-------------EDFRGYLLKYGHCLLHRRAWMGEALEDGFSLSFEVWDAMDGLRMLSASGPIRVQMDQQGGFTSLRMGGTHRREVPGPAFSAASRDPLRRRFASMEDYFGRGHLPEFGAALSVRVTVTDERTGRMALLWSTRKDAAYLTEAPLAYWEPFLPEGSISCFLDHWSPLMCPAYDGESMTVTIGFHVCP 441
The following BLAST results are available for this feature:
BLAST of NO02G02940 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
XP_005853741.13.900e-18477.17hypothetical protein NGA_0168202 [Nannochloropsis ... [more]
EWM22815.12.700e-2331.21hypothetical protein Naga_100437g2 [Nannochloropsi... [more]
EWM22694.12.100e-2032.35hypothetical protein Naga_100340g3 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006940NSK006940Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G02940.1NO02G02940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574505gene_881Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100026g9gene295Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G02940.1NO02G02940.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G02940 ID=NO02G02940|Name=NO02G02940|organism=Nannochloropsis oceanica|type=gene|length=2053bp
ATGCACACGCCCGCGACCACTGAACCGCCGCCCGCGGGTGCCCTAGTCAC
GCCACCTAACGCTGCGAATGGTACCCCTGCGCCGGCCTCGGCCAGCATGA
TCCCCCCTCCCCTCGTCTCGTCTTCCGCCGTCTCGGCCAATACTTCGTCT
CCCAAGAAGCAAACACCTTTTGTGAAACCACCCCACCAACAACAACAGCC
GCAATTTCAACGGGGCAGTGGATTTGTGGATGTACTTCGGTCAATGGGCA
GTCTCACAGTAAGCAATGCTTACGACATTCGAGAAGAGCTGCGGTTCTTA
CGCCGTCGCCGAGGCAAGCAAGAGGAAGCCATCGTCCTGTCCGAGCTGGC
GGCGCTGGCGTCGTGCTTGAACGAGCTGGTTGTGTCCACGATGACGAGCA
ACAGCGGAACTGGCAACCCGGTAGGGAGCAGCGGCAGCAGCGGGTCGAGC
GAAGAAGGGGGTAATAAGGGCGAGGTGGGGAATAAGGCCGGAGGTGGTGC
GGTGGCAGTGGAGCCTTCCCGACGTTCCTTAGTTGGTATGTTGTCGTATG
AGGGTCTGTTGCCTGCTTTTCAGCATACGGCAGTGCCTGCACCGATGGCT
GTGTTGGGTGACGCGGCATTGTTGCATTATTGCTTGGAGTTCTTGGTGGA
AGGGCGATTGGAGCATCGGAAGCAGTTGGGGGAGTTGGCGTTGGTCTGTC
GGCAGTGGCGGGACTTGGCTCAGTCGGAACGCTTTTGGAGGCCCATTGTG
TTGCAGCTTTTCCCCCGACTGAGCCCCACAGCTTTGGATCATGACGAGGA
GGACCCTGCGGCTGCAGGGGCCGCCTCGACTACAGATGCCTCTGCGGCGA
CAGTGGCAGGGGTTGAGGCTAACGTGGCGGTGGCTGAGCTCGGGGGAGGA
GCCACTGGAGGGGTGAATGATCAAACGGGGCCGCAGGCGATGGTGCCGGA
TTGGTACCGGAAGTATTTGATTCAATTTGGACGGTGCTTGTTTGATCGGC
CGGTTCGACAGGGgtaagtcaaggcgggaagaaaggaggaaagcgtggtt
gttatttgttggaggggtgaacgaaagaaagagagagggaaagattgcag
ggaaggtattcacatgtacatctgtacactacgcatgacagGCCATGGCA
CGAGGGGATTACGCTGTCGTTTGATTTGCACGATGAGCAGGATGGCATCC
GCTTGTTTTCGTCGACGGGCCCGATTCGGTTCACGGGGACCACGATCCCG
GGGATgtacgtgcatggatggagggacagggggagggagggagggaagaa
gtgagggggcggaggaaggaaaggacgtccgtgcgtattgttgatctcaa
tgtgtctttctcacttttatctactttttaacttctctgccttggattag
TACTGCCATGAAGCTCACCGGCCGTCGTCGTCGCGTCACGGCTCCTTTCT
CCGCCGCGTCCCGCGACCGCAAGCTCGGCGCGCTTACGTCCATCGAAGAA
CTCTTCCAAGAAGGGGACTCGGGCGAATACTCCGTCGCCTTCACCATCCG
TGTCACGGCCCGCGACGAACGTACCGGCAAGATGGCCTTGCTCTTCTCTT
CGGGAAAACGAACGAAACGATGGGTAGAACCATTGGGGGAGGATATGGGG
GTGCCTCAAGGCACGCTGTTGGTAAATCAAGGTTGGTCGCGGGTAACTAT
CCCATCAACCGATCTAGCTATGCAGATGCTGACCGTTTTTTATGTGGCGC
CGGTGGAAGGCCAGCCGGAGACGGTTGATCCGGCCGAGCGGCTTTATTCG
GTATTGCCGCTTGATTGTGCATTCATGCTGCAGTGTAAGACAGAGgtaag
ccagaggaaggggaggagaaagaggtaggacacaggctaaaccttttgcg
aataaataggaaacaaacgtttcgcctaggtacatccacatctcacctgt
acctccttgacacacttctgtattcaaacagGACCAGGAGCAGATAGGTC
GATTCATCCTGGCTGCCTTGGAGAACGGCCCGAGCTTAGAGTGTGACAGT
TGA
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protein sequence of NO02G02940.1

>NO02G02940.1-protein ID=NO02G02940.1-protein|Name=NO02G02940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=548bp
MHTPATTEPPPAGALVTPPNAANGTPAPASASMIPPPLVSSSAVSANTSS
PKKQTPFVKPPHQQQQPQFQRGSGFVDVLRSMGSLTVSNAYDIREELRFL
RRRRGKQEEAIVLSELAALASCLNELVVSTMTSNSGTGNPVGSSGSSGSS
EEGGNKGEVGNKAGGGAVAVEPSRRSLVGMLSYEGLLPAFQHTAVPAPMA
VLGDAALLHYCLEFLVEGRLEHRKQLGELALVCRQWRDLAQSERFWRPIV
LQLFPRLSPTALDHDEEDPAAAGAASTTDASAATVAGVEANVAVAELGGG
ATGGVNDQTGPQAMVPDWYRKYLIQFGRCLFDRPVRQGPWHEGITLSFDL
HDEQDGIRLFSSTGPIRFTGTTIPGITAMKLTGRRRRVTAPFSAASRDRK
LGALTSIEELFQEGDSGEYSVAFTIRVTARDERTGKMALLFSSGKRTKRW
VEPLGEDMGVPQGTLLVNQGWSRVTIPSTDLAMQMLTVFYVAPVEGQPET
VDPAERLYSVLPLDCAFMLQCKTEDQEQIGRFILAALENGPSLECDS*
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Synonyms
Publications