NO02G02870, NO02G02870 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO02G02870 vs. NCBI_GenBank
Match: EWM30364.1 (nuclear pore complex protein nup98-nup96 isoform 1 [Nannochloropsis gaditana]) HSP 1 Score: 255.4 bits (651), Expect = 1.000e-63 Identity = 181/431 (42.00%), Postives = 214/431 (49.65%), Query Frame = 0 Query: 987 MDDNELRHVRNFTITRDGVGRVEWEGETDVLGLHLDQLVRIEAKEVQVYFDESGREVKDPEGEKLNKPAVVTLFSVRHRRKAPEEYKEHLKELCRGWDRVEFLEYECETGRWTFKVAHFSKYGVE----------------------------------------------------------SDXXXXXXXXXXXXXXXXXXQVRDRRVV----------------------AAPLYGLEASRIKSLVGIFGXXXXXXXXXXXXXXXXXXMCEGVEYGEYQQLREREGRRRPWAPLPSRRQGRGSRRQVWMEEEGDVD---EEETEKDREGLASSEMVPPRR---RLASASRLSDA------TLMRGCGAVGTNPSDGALLAVSTGDEATGEGGRDQAVKGMKRKPIDFSAFMGRSFRVGWGGMGAWPCP 1326 MDD +LR VRNF +TR+G G++EWEGETDVLGL+LD+LVRIEAKEV+VY D VKD EG+KLNKPAVVTLFSVRHRRK+PEEY EHL+ELCRGWDRVEFL+Y+ ETGRWTFKV+HFSKYGVE SD + V A PLYGLEASRIK+LVGIFG EG E Y + E RP + L G RR ++ EG D E + +A + +P R R+A A S A +LMRGCGAV T+P+D LLAV+TG A G + G RKP+D+SAFMGRSFRVGWG G+ P Sbjct: 1 MDDAQLRRVRNFCVTREGYGKIEWEGETDVLGLNLDELVRIEAKEVRVYDDV---PVKDEEGKKLNKPAVVTLFSVRHRRKSPEEYGEHLRELCRGWDRVEFLDYQSETGRWTFKVSHFSKYGVEDEDDEEEGGTTGHELRKGKGGDEADGDGRVGQKMAQETASGLGTGDSGARTGGYGIPDSDEDDKSVTAEEVELVEDGFEDEGNEVEGVLSEEERGEEEVMEMPPVGGRAPPLYGLEASRIKTLVGIFGVEEEDD-------------TEGTE--AYGRRARAESEERPLSSLED--DGGFGRRDLFSFSEGRNDGVLMVEDSVEERAIAMAPSLPSARAVSRVAPAPSASPALGFVAPSLMRGCGAVKTSPTDDTLLAVATGRRARERAGEE---GGTGRKPVDYSAFMGRSFRVGWGPDGSLAAP 408
BLAST of NO02G02870 vs. NCBI_GenBank
Match: XP_024579790.1 (nucleoporin 98 [Plasmopara halstedii] >CEG43421.1 nucleoporin 98 [Plasmopara halstedii]) HSP 1 Score: 127.9 bits (320), Expect = 2.400e-25 Identity = 74/154 (48.05%), Postives = 93/154 (60.39%), Query Frame = 0 Query: 963 LNPCAPTLSLPDYFTSPSISELQRMDDNELRHVRNFTITRDGVGRVEWEGETDVLGLHLDQLVRIEAKEVQVYFDESGREVKDPEGEKLNKPAVVTLFSVRHRRK--APEEYKEHLKELCRGWD-RVEFLEYECETGRWTFKVAHFSKYGVESD 1114 L+P PTL DY+T PS LQ M D+EL V FTI G+G VEW G+TDV L LD+L+ E KEV VY DE + K G+ LNKPA+V L + RK +PE YKE +K+ R D FL+Y E G W F+V HFS+YG++ D Sbjct: 1045 LSPSCPTLKNKDYYTKPSYERLQAMTDDELSEVEQFTIGCRGLGAVEWIGKTDVRDLDLDELICFERKEVIVYKDE---DKKHALGKGLNKPAIVELLGIFPPRKSTSPENYKERVKQ--RTHDIGATFLDYSVENGIWRFRVEHFSRYGLQDD 1193
BLAST of NO02G02870 vs. NCBI_GenBank
Match: XP_002901259.1 (nuclear pore complex protein, putative [Phytophthora infestans T30-4] >EEY59245.1 nuclear pore complex protein, putative [Phytophthora infestans T30-4]) HSP 1 Score: 126.7 bits (317), Expect = 5.400e-25 Identity = 70/149 (46.98%), Postives = 91/149 (61.07%), Query Frame = 0 Query: 968 PTLSLPDYFTSPSISELQRMDDNELRHVRNFTITRDGVGRVEWEGETDVLGLHLDQLVRIEAKEVQVYFDESGREVKDPEGEKLNKPAVVTL---FSVRHRRKAPEEYKEHLKELCRGWDRVEFLEYECETGRWTFKVAHFSKYGVESD 1114 PTL DYFT PS LQ M+D+EL V FT+ G+G VEW G+TDV L LD+LV E KEV VY D+ E K P G+ LNKPA+V L F + + +P++YKE +K+ + FL+Y E G W F+V HFS+YG + D Sbjct: 1060 PTLKNKDYFTIPSYERLQTMNDHELSQVEKFTVGCRGLGAVEWVGKTDVRDLDLDELVYFEKKEVIVYRDD---EKKHPLGKGLNKPAIVELLGIFPPQRKSTSPDKYKERVKQRTQDIG-ATFLDYSIEKGIWRFRVEHFSRYGFDDD 1204
BLAST of NO02G02870 vs. NCBI_GenBank
Match: EWM30402.1 (hypothetical protein Naga_100026g16 [Nannochloropsis gaditana]) HSP 1 Score: 119.4 bits (298), Expect = 8.600e-23 Identity = 63/111 (56.76%), Postives = 76/111 (68.47%), Query Frame = 0 Query: 782 EDLEMTPPALQSYRHTPRSAAKLVPRGLRSNGPETPVARRGGRGSTSSPSSFSAFNQDDEHPTLVSPASDSFAGRSHKHLVVDRDDIFAVESKIFDLDDLRGQSRYRDGNG 893 E + TPP+LQ YR TPRSAAKL+PRGLR+ ET + R S S +++ P +VSPASDSF GRSHKHLV+D+DDIFA ESKIFDLD+L G+ R D NG Sbjct: 221 EAFDATPPSLQQYRDTPRSAAKLLPRGLRTGALETALGRGPAAASRGGRS-----GMEEDFPNMVSPASDSFPGRSHKHLVIDQDDIFAAESKIFDLDELPGRDRLVDANG 326
BLAST of NO02G02870 vs. NCBI_GenBank
Match: OWZ12711.1 (hypothetical protein PHMEG_00014086 [Phytophthora megakarya]) HSP 1 Score: 119.4 bits (298), Expect = 8.600e-23 Identity = 66/150 (44.00%), Postives = 89/150 (59.33%), Query Frame = 0 Query: 964 NPCAPTLSLPDYFTSPSISELQRMDDNELRHVRNFTITRDGVGRVEWEGETDVLGLHLDQLVRIEAKEVQVYFDESGREVKDPEGEKLNKPAVVTLFSV--RHRRKAPEEYKEHLKELCRGWDRVEFLEYECETGRWTFKVAHFSKYGVE 1112 +P P L DY+T PS LQ M D+EL V FT+ G+G VEW G+TDV L LD+LV E KEV VY D+ E K G+ LNKPA+V L + H+ PE+YK+ +++ + + FL+Y E G W F+V HFS+YG + Sbjct: 664 SPSCPMLKNKDYYTIPSYERLQDMTDDELSRVEKFTVGCRGLGAVEWIGKTDVRELDLDELVYFEKKEVIVYRDD---EKKHELGKGLNKPAIVELLGIFPPHKSTFPEKYKDRVRQRTQDIGAI-FLDYSIEKGIWRFRVEHFSRYGFD 809
BLAST of NO02G02870 vs. NCBI_GenBank
Match: CCA21109.1 (nuclear pore complex protein putative [Albugo laibachii Nc14]) HSP 1 Score: 119.0 bits (297), Expect = 1.100e-22 Identity = 64/157 (40.76%), Postives = 91/157 (57.96%), Query Frame = 0 Query: 961 PRLNPCAPTLSLPDYFTSPSISELQRMDDNELRHVRNFTITRDGVGRVEWEGETDVLGLHLDQLVRIEAKEVQVYFDESGREVKDPEGEKLNKPAVVTLFSV----RHRRKAPEEYKEHLKELCRGWDRVEFLEYECETGRWTFKVAHFSKYGVESD 1114 P+ + P L+ Y+T P + RM D EL VR+FT+ G+G VEW G TD+ L+LD+LV E KEV VY D+ E K P G+ LNKPA+V L + + A + YKE + + + D +F++Y E G W F+V HFS+YG++ D Sbjct: 999 PKKSMACPILTKTGYYTIPPYGRICRMSDQELAQVRSFTVGCHGLGSVEWIGLTDIRNLNLDELVTFEKKEVMVYKDD---EDKHPLGDGLNKPAIVELLEIFPPNLEDKTAVKRYKERVIQRTKDID-ADFVDYSAEAGIWRFRVEHFSRYGIKDD 1151
BLAST of NO02G02870 vs. NCBI_GenBank
Match: ETI53918.1 (hypothetical protein F443_03209 [Phytophthora parasitica P1569] >ETI53919.1 hypothetical protein, variant 1 [Phytophthora parasitica P1569] >ETI53920.1 hypothetical protein, variant 2 [Phytophthora parasitica P1569] >ETI53921.1 hypothetical protein, variant 3 [Phytophthora parasitica P1569] >ETI53922.1 hypothetical protein, variant 4 [Phytophthora parasitica P1569] >ETI53923.1 hypothetical protein, variant 5 [Phytophthora parasitica P1569]) HSP 1 Score: 118.6 bits (296), Expect = 1.500e-22 Identity = 68/147 (46.26%), Postives = 86/147 (58.50%), Query Frame = 0 Query: 968 PTLSLPDYFTSPSISELQRMDDNELRHVRNFTITRDGVGRVEWEGETDVLGLHLDQLVRIEAKEVQVYFDESGREVKDPEGEKLNKPAVVTL---FSVRHRRKAPEEYKEHLKELCRGWDRVEFLEYECETGRWTFKVAHFSKYGVE 1112 P L DY+T PS LQ M D+EL V FT+ G+G VEW G+TDV L LD L+ E KEV VY D+ E K P G+ LNKPAVV L F + +PE+YKE +K+ + FL+Y E G W F+V HFS+YG + Sbjct: 1060 PILKNKDYYTIPSYEHLQAMTDHELSQVEKFTVGCRGLGAVEWIGKTDVRDLDLDDLIYFEKKEVIVYRDD---EKKHPLGKGLNKPAVVELLGIFPPPRKSTSPEKYKERVKQRTQDIG-ATFLDYSIEKGIWRFRVEHFSRYGFD 1202
BLAST of NO02G02870 vs. NCBI_GenBank
Match: ETK93781.1 (hypothetical protein L915_03088 [Phytophthora parasitica] >ETK93782.1 hypothetical protein, variant 1 [Phytophthora parasitica] >ETK93783.1 hypothetical protein, variant 2 [Phytophthora parasitica] >ETK93784.1 hypothetical protein, variant 3 [Phytophthora parasitica] >ETK93785.1 hypothetical protein, variant 4 [Phytophthora parasitica] >ETK93786.1 hypothetical protein, variant 5 [Phytophthora parasitica]) HSP 1 Score: 118.6 bits (296), Expect = 1.500e-22 Identity = 68/147 (46.26%), Postives = 86/147 (58.50%), Query Frame = 0 Query: 968 PTLSLPDYFTSPSISELQRMDDNELRHVRNFTITRDGVGRVEWEGETDVLGLHLDQLVRIEAKEVQVYFDESGREVKDPEGEKLNKPAVVTL---FSVRHRRKAPEEYKEHLKELCRGWDRVEFLEYECETGRWTFKVAHFSKYGVE 1112 P L DY+T PS LQ M D+EL V FT+ G+G VEW G+TDV L LD L+ E KEV VY D+ E K P G+ LNKPAVV L F + +PE+YKE +K+ + FL+Y E G W F+V HFS+YG + Sbjct: 1060 PILKNKDYYTIPSYEHLQTMTDHELSQVEKFTVGCRGLGAVEWIGKTDVRDLDLDDLIYFEKKEVIVYRDD---EKKHPLGKGLNKPAVVELLGIFPPPRKSTSPEKYKERVKQRTQDIG-ATFLDYSIEKGIWRFRVEHFSRYGFD 1202
BLAST of NO02G02870 vs. NCBI_GenBank
Match: ETL47169.1 (hypothetical protein L916_03060 [Phytophthora parasitica] >ETL47170.1 hypothetical protein, variant 1 [Phytophthora parasitica] >ETL47171.1 hypothetical protein, variant 2 [Phytophthora parasitica] >ETL47172.1 hypothetical protein, variant 3 [Phytophthora parasitica] >ETL47173.1 hypothetical protein, variant 4 [Phytophthora parasitica] >ETL47174.1 hypothetical protein, variant 5 [Phytophthora parasitica]) HSP 1 Score: 118.6 bits (296), Expect = 1.500e-22 Identity = 68/147 (46.26%), Postives = 86/147 (58.50%), Query Frame = 0 Query: 968 PTLSLPDYFTSPSISELQRMDDNELRHVRNFTITRDGVGRVEWEGETDVLGLHLDQLVRIEAKEVQVYFDESGREVKDPEGEKLNKPAVVTL---FSVRHRRKAPEEYKEHLKELCRGWDRVEFLEYECETGRWTFKVAHFSKYGVE 1112 P L DY+T PS LQ M D+EL V FT+ G+G VEW G+TDV L LD L+ E KEV VY D+ E K P G+ LNKPAVV L F + +PE+YKE +K+ + FL+Y E G W F+V HFS+YG + Sbjct: 1060 PILKNKDYYTIPSYEHLQTMTDHELSQVEKFTVGCRGLGAVEWIGKTDVRDLDLDDLIYFEKKEVIVYRDD---EKKHPLGKGLNKPAVVELLGIFPPPRKSTSPEKYKERVKQRTQDIG-ATFLDYSIEKGIWRFRVEHFSRYGFD 1202
BLAST of NO02G02870 vs. NCBI_GenBank
Match: ETM00272.1 (hypothetical protein L917_02988 [Phytophthora parasitica] >ETM00273.1 hypothetical protein, variant 1 [Phytophthora parasitica] >ETM00274.1 hypothetical protein, variant 2 [Phytophthora parasitica] >ETM00275.1 hypothetical protein, variant 3 [Phytophthora parasitica] >ETM00276.1 hypothetical protein, variant 4 [Phytophthora parasitica] >ETM00277.1 hypothetical protein, variant 5 [Phytophthora parasitica]) HSP 1 Score: 118.6 bits (296), Expect = 1.500e-22 Identity = 68/147 (46.26%), Postives = 86/147 (58.50%), Query Frame = 0 Query: 968 PTLSLPDYFTSPSISELQRMDDNELRHVRNFTITRDGVGRVEWEGETDVLGLHLDQLVRIEAKEVQVYFDESGREVKDPEGEKLNKPAVVTL---FSVRHRRKAPEEYKEHLKELCRGWDRVEFLEYECETGRWTFKVAHFSKYGVE 1112 P L DY+T PS LQ M D+EL V FT+ G+G VEW G+TDV L LD L+ E KEV VY D+ E K P G+ LNKPAVV L F + +PE+YKE +K+ + FL+Y E G W F+V HFS+YG + Sbjct: 1060 PILKNKDYYTIPSYEHLQAMTDHELSQVEKFTVGCRGLGAVEWIGKTDVRDLDLDDLIYFEKKEVIVYRDD---EKKHPLGKGLNKPAVVELLGIFPPPRKSTSPEKYKERVKQRTQDIG-ATFLDYSIEKGIWRFRVEHFSRYGFD 1202 The following BLAST results are available for this feature:
BLAST of NO02G02870 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO02G02870 ID=NO02G02870|Name=NO02G02870|organism=Nannochloropsis oceanica|type=gene|length=5146bpback to top protein sequence of NO02G02870.1 >NO02G02870.1-protein ID=NO02G02870.1-protein|Name=NO02G02870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1348bpback to top Synonyms
Publications
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