NO02G02790, NO02G02790 (gene) Nannochloropsis oceanica

Overview
NameNO02G02790
Unique NameNO02G02790
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length811
Alignment locationchr2:758659..759469 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:758659..759469 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR024491Se_SelK/SelG
Homology
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BLAST of NO02G02790 vs. NCBI_GenBank
Match: EWM30395.1 (hypothetical protein Naga_100026g24 [Nannochloropsis gaditana])

HSP 1 Score: 72.4 bits (176), Expect = 1.700e-9
Identity = 59/154 (38.31%), Postives = 70/154 (45.45%), Query Frame = 0 
Query:   34 MRGAFPILCLIVLTSMVCQAFLWTRSCLSSSSSSSGLLKARGGAVIRGKKSVGTARATSTSIGLN-RTRVYKKKGFVSRLMGGVKAFVKSYFASLINPTFEKELTKSNSITSRGXXXXXXXXXXXXXXXXXXXXXXXXXTGSISDLVPEP-SCG 186
            MR     LC+ +L   VC+A+            S+   K RGGAV++        R T  S+  + R RVYKK     R  GG+K F KSYFASLINPTFEKEL   N  +  G                          GSISDL PEP SCG
Sbjct:    1 MRCVQLFLCISILMVAVCEAW---------RVRSADFSKVRGGAVLK-------TRTTGKSMTAHRRNRVYKKDNAFVRFFGGMKVFFKSYFASLINPTFEKELMTGNRGSGAG---VAGPASDLKAGKVRRKRVGGRRVGSISDLAPEPSSCG 135
The following BLAST results are available for this feature:
BLAST of NO02G02790 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30395.11.700e-938.31hypothetical protein Naga_100026g24 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G02790.1NO02G02790.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100026g24gene281Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G02790.1NO02G02790.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G02790 ID=NO02G02790|Name=NO02G02790|organism=Nannochloropsis oceanica|type=gene|length=811bp
CGAGGGGAATCCAACGGTGGGCGACGAGGGCCGAGACGGGGAACCCTCTT
CGTCTGTCTCTAGAAGGCCCTCTGGCGCCGCAAGGCAACCCAAAGACATC
TTCAAAACATTCCCATGACGAGCTCAGCCTGTTCAATGTCGTCTTGTCGC
GGGATAGTGGAGGCGTAGCTTTCATGGGCGGCATGCGAATAGCACCACTA
GGAGAAAAAGCCATATCTCGTGACAAAGCATCATCCCTTCCCCTTTCCTT
CCTTTATGCAGACAGAGCAGACATGAGGGGGGCCTTTCCCATACTATGCC
TGATTGTGTTGACATCGATGGTCTGCCAGGCATTCCTGTGGACTAGGTCG
TGTTTATCGTCATCATCGTCGTCGTCGGGGCTGCTGAAAGCGCGGGGAGG
TGCAGTCATACGAGGAAAGAAAAGTGTGGGGACAGCGAGAGCAACTAGCA
CCAGCATCGGCCTCAACCGTACCCGAGTTTACAAGAAGAAGGGATTCGTT
TCTCGCCTTATGGGAGGCGTGAAGGCGTTTGTGAAGTCCTACTTTGCATC
CTTAATCAACCCGACGTTTGAGAAGGAGCTTACCAAGAGCAACAGCATTA
CTAGTCGCGGCGCCGGTGGGGGTGGGAGTGCCACTGCGGCCTTAAAATCC
AGTGCTGCTCGGAGAAAACGAACAGGTGGTCGACGGACGGGGTCGATAAG
TGACTTGGTACCTGAGCCTTCTTGCGGAGGGTAGAGTAGTGCTGGACTTG
TGCAAAATTGATATCAACTCAAAGTAAACCGTGCTTCACGAGTGCTAACA
AAAGAATAGAA
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protein sequence of NO02G02790.1

>NO02G02790.1-protein ID=NO02G02790.1-protein|Name=NO02G02790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=187bp
MGGMRIAPLGEKAISRDKASSLPLSFLYADRADMRGAFPILCLIVLTSMV
CQAFLWTRSCLSSSSSSSGLLKARGGAVIRGKKSVGTARATSTSIGLNRT
RVYKKKGFVSRLMGGVKAFVKSYFASLINPTFEKELTKSNSITSRGAGGG
GSATAALKSSAARRKRTGGRRTGSISDLVPEPSCGG*
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Synonyms
Publications