NO02G02760, NO02G02760 (gene) Nannochloropsis oceanica

Overview
NameNO02G02760
Unique NameNO02G02760
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1255
Alignment locationchr2:751983..753237 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:751983..753237 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0016255attachment of GPI anchor to protein
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0042765GPI-anchor transamidase complex
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR009600PIG-U
Homology
BLAST of NO02G02760 vs. NCBI_GenBank
Match: EWM30401.1 (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 245.4 bits (625), Expect = 2.400e-61
Identity = 152/295 (51.53%), Postives = 208/295 (70.51%), Query Frame = 0
Query:    9 AALEMVLQPVLLLSSIHALSCLSSVFPSLSTSSKSTTARLVGMSMSTLQLLGLLAWSDPLMAIMLGLVALCVAGNMYNVALAAAVLPSLLLVVLSPERRAVVFYPEPMAMRPDMGIWWYLMSEVFRQYQPYFRLILAAHPFLYLPPLAFRVL-AGSATSKQHPLPEALLRLLYLVTASISMLFRPSPILTQQLSLAIALVAWHPDLLTALRPKLLLLSVGLGAPLILAPIMEYLWLDAQSGNANYLYFQTLVWTVFHSLLVLEVTVVLVQHATDRNRVEEGSENRTQRTQKGSNE 303
            A +  V + VLL++ I+AL+ L++ FPS   S  S  AR+V  S+ST  L  LLA+ DPL+A +LGL A CV+G+  N++LA +V PS++LV  S   R  +F+       P+MG+WWY+M+EVF Q+  YFRL+ AAHPFLY+PPLAFRVL +GSA     PLP  LLRL ++V A I++L  P PIL QQ+++ +AL+  HP LL AL  K+LLL VG+G PL+L+PIM YLWLDA+SGNANYLYFQTLVW+  ++LL+LEVTVVLV+ A  R       ++R + + +G+N+
Sbjct:   27 AVICAVSRSVLLVTIINALAHLAA-FPS---SQFSANARIVFFSLSTGFLFCLLAYLDPLVASVLGLSAFCVSGHTRNISLAMSVAPSMILVFTSQTLRTSLFHTPQTPPVPNMGLWWYVMAEVFAQFDSYFRLVFAAHPFLYVPPLAFRVLTSGSA----KPLPRRLLRLFFMVMAGIAILLHPHPILLQQITMDVALLTLHPTLLMALPSKILLLGVGMGVPLVLSPIMSYLWLDARSGNANYLYFQTLVWSALNALLLLEVTVVLVREAA-RAEGRGQRKDRRRESHQGNNK 312          
BLAST of NO02G02760 vs. NCBI_GenBank
Match: XP_009826801.1 (hypothetical protein H257_04115 [Aphanomyces astaci] >ETV83371.1 hypothetical protein H257_04115 [Aphanomyces astaci])

HSP 1 Score: 82.4 bits (202), Expect = 2.600e-12
Identity = 58/159 (36.48%), Postives = 87/159 (54.72%), Query Frame = 0
Query:  106 RRAVVFYPEPMAMRPDMGIWWYLMSEVFRQYQPYFRLILAAHPFLYLPPLAFRVLAGSATSKQHPLPEALLRLLYLVTASISMLFRPSPILTQQLSLAIALVAWHPDLLTALRPKLLLLSVGLGAPLILAPIMEYLWLDAQSGNANYLYFQTLVWTVFH 265
            R   V+  E   + P++GI+WY   E+F ++Q YF ++L  HP+LY+ PL  R+ A        PL  A + LL LV+     +F+P P L   +  A+     HP  +  + P   +L+ GLG   +L P+M +LWL   SGNAN+ Y QTLV+  F+
Sbjct:  267 RATYVWMHEYPDLTPNIGIFWYFFMELFDRFQSYFLVLLHLHPYLYVLPLFIRLRA-------RPLAFACV-LLALVS-----IFQPYPSL-GDIGFALPCFLLHPSSIIGM-PTKFVLAAGLGVATVLLPVMGFLWLYPGSGNANFFYNQTLVFQYFY 410          
BLAST of NO02G02760 vs. NCBI_GenBank
Match: CBJ31446.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 80.5 bits (197), Expect = 1.000e-11
Identity = 56/162 (34.57%), Postives = 90/162 (55.56%), Query Frame = 0
Query:  118 MRPDMGIWWYLMSEVFRQYQPYFRLILAAHPFLYLPPLAFRVLAGSATSKQHPLPEALLRLLYLVTASISMLFRPSPILTQQLSLAIALVAWHPDLLTALRPKLLLLSVGLGA--PLILAPIMEYLWLDAQSGNANYLYFQTLVWTVFHSLLVLEVTVVLVQ 278
            + P++G++WY  +EVF +++ +FR++  + P++Y+ P         AT +    PEAL  L+     +I  LF+P P L   + LA  L   HP     +R   L++ VG+ A  P +L P M +LWL A +GNAN+ YFQT+   V  ++ VL+    LV+
Sbjct:  275 LTPNIGLYWYFFAEVFPRFRGFFRVLFLSQPYVYVLP---------ATLRLGMFPEALASLV----LAIFGLFQPYPTLVDPM-LAGCLFLCHPRTSARMR---LVIPVGMAALVPALLLPTMRHLWLQAGTGNANFYYFQTVGLNVLLAVFVLQFAAALVK 419          
BLAST of NO02G02760 vs. NCBI_GenBank
Match: XP_024575388.1 (gpi transamidase subunit pig-u family protein [Plasmopara halstedii] >CEG39019.1 gpi transamidase subunit pig-u family protein [Plasmopara halstedii])

HSP 1 Score: 74.7 bits (182), Expect = 5.500e-10
Identity = 49/151 (32.45%), Postives = 79/151 (52.32%), Query Frame = 0
Query:  118 MRPDMGIWWYLMSEVFRQYQPYFRLILAAHPFLYLPPLAFRVLAGSATSKQHPLPEALLRLLYLVTASISMLFRPSPILTQQLSLAIALVAWHPDLLTALRPKLLLLSVGLGAPLILAPIMEYLWLDAQSGNANYLYFQTLVWTVFHSLLV 269
            + P++GI+WY  +EVF ++ PYF  +L  HP +Y+ P+  R+            P+A       V   I  LF+  P         + ++A HP  +  +  + L + +GLG    + P+M +LWL   SGNAN+ Y QTLV+ +F+S L+
Sbjct:  269 LTPNIGIFWYFFTEVFDRFIPYFLFVLHLHPLIYVAPIYLRLA---------HRPQAYA----CVLIGIFSLFQAYPSF-GDFGFFLTMLALHPKSIMMIENRFLYV-LGLGVATCMLPVMWFLWLFPASGNANFFYNQTLVYQIFNSQLI 404          
BLAST of NO02G02760 vs. NCBI_GenBank
Match: GAY00730.1 (Hypothetical protein PINS_008552 [Pythium insidiosum])

HSP 1 Score: 73.9 bits (180), Expect = 9.400e-10
Identity = 52/151 (34.44%), Postives = 81/151 (53.64%), Query Frame = 0
Query:  118 MRPDMGIWWYLMSEVFRQYQPYFRLILAAHPFLYLPPLAFRVLAGSATSKQHPLPEALLRLLYLVTASISMLFRPSPILTQQLSLAIALVAWHPDLLTALRPKLLLLSVGLGAPLILAPIMEYLWLDAQSGNANYLYFQTLVWTVFHSLLV 269
            + P++GI+WY   EVF ++ P+F L+   HP +Y+ PL  R L+G         P+A    L+     I+ LF+  P       L  A V+ HP  +  ++ +  + ++GLG    + P+M +LWL   SG AN+ Y QTLV+ VF S L+
Sbjct:  270 LTPNVGIFWYFFIEVFDRFIPFFLLVFHIHPLIYVAPLYLR-LSGR--------PQAYACALF----GIASLFQAYPSF-GDAGLFFAFVSIHPKTVMNIKNR-FVYALGLGVATCMLPVMWFLWLFPASGKANFFYNQTLVYQVFLSQLI 405          
BLAST of NO02G02760 vs. NCBI_GenBank
Match: OQR97871.1 (hypothetical protein ACHHYP_09876 [Achlya hypogyna])

HSP 1 Score: 73.6 bits (179), Expect = 1.200e-9
Identity = 56/162 (34.57%), Postives = 85/162 (52.47%), Query Frame = 0
Query:  109 VVFYPEPMAMRPDMGIWWYLMSEVFRQYQPYFRLILAAHPFLYLPPLAFRVLAGSATSKQHPLPEALLRLLYLVTASISMLFRPSPILTQQLSLAIALVAWHPDLLTALRPKLLLLSVGLGAPLILAPIMEYLWLDAQSGNANYLYFQTLVWTVFHSLLVLE 271
            V+ YP+   + P++GI+WY   E+F +++ YF  +L  HP+LY+ P+  R+         H  P A   +L  V A    LF+  P +   L L +A    HP  +  ++ K  + + GL     L P+M YLWL   SGN+N+ Y QTLV+  F   LV+E
Sbjct:  264 VLEYPD---LTPNVGIFWYFFMELFDRFRAYFLFLLHVHPYLYVLPIYIRL---------HARPLAATAVLLGVFA----LFQAYPSV-GDLGLFVASCLIHPRSVLGMQHK-FITATGLVVASALLPVMWYLWLFPGSGNSNFFYNQTLVYQFFGVRLVIE 407          
BLAST of NO02G02760 vs. NCBI_GenBank
Match: OQS07039.1 (hypothetical protein THRCLA_00956 [Thraustotheca clavata])

HSP 1 Score: 72.8 bits (177), Expect = 2.100e-9
Identity = 51/156 (32.69%), Postives = 84/156 (53.85%), Query Frame = 0
Query:  109 VVFYPEPMAMRPDMGIWWYLMSEVFRQYQPYFRLILAAHPFLYLPPLAFRV-LAGSATSKQHPLPEALLRLLYLVTASISMLFRPSPILTQQLSLAIALVAWHPDLLTALRPKLLLLSVGLGAPLILAPIMEYLWLDAQSGNANYLYFQTLVWTVF 264
            +V YP+   + P++G++WY  +E+F +++ YF  IL  HPFLY+ P+  R+     + S+  PL  A+  LL      I  +F+  P         I     HP  +  ++ K ++++ G+    +L P M YLWL   SGN+N+ Y QTLV+ +F
Sbjct:  279 IVQYPD---LTPNIGLFWYFFTELFDRFRNYFLFILHIHPFLYVVPIYIRLRYINPSQSRTRPL-AAVSTLL-----GIFAVFQAYPSF-GDFGFFITSCLLHPRSIIGMQQKFIMMT-GIAVATVLLPTMWYLWLYPGSGNSNFFYNQTLVYQLF 423          
BLAST of NO02G02760 vs. NCBI_GenBank
Match: OXG23507.1 (phosphatidylinositol glycan, class U [Cryptococcus neoformans var. grubii Tu401-1])

HSP 1 Score: 71.2 bits (173), Expect = 6.100e-9
Identity = 49/181 (27.07%), Postives = 93/181 (51.38%), Query Frame = 0
Query:  118 MRPDMGIWWYLMSEVFRQYQPYFRLILAAHPFLYLPPLAFRVLAGSATSKQHPLPEALLRLLYLVTASISMLFRPSPILTQQLSLAIALVAWHPDLLTALRPKLLLLSVGLGAPLILAPIMEYLWLDAQSGNANYLYFQTLVWTVFHSLLVLEVTVVLVQHATDRNRVEEGSENRTQRTQK 299
            + P++G+WWY  +E+F  ++ +F  +   H  +Y+ P+  R++         PL   LL L   VT      ++  P L   + L   L+   PD+L  LR  L  L+V L   ++L P++  LWL   +GNAN+ Y  T+V+ +  SL+++++    ++         EG+++++++  K
Sbjct:  253 LTPNVGMWWYFFTEMFDHFRTFFLCVFQLHTVIYVAPICIRMV-------DRPLDAILLLLAIFVT------WKSFPAL-GDMGLCAGLIGCFPDILANLRHPLFSLTVHLYTSILL-PLLHSLWLLTGTGNANFFYAATMVYGLNASLVIVDMLGASMRVEVKERATLEGADDQSEKQDK 418          
BLAST of NO02G02760 vs. NCBI_GenBank
Match: GBG29948.1 (Phosphatidylinositol glycan anchor biosynthesis class U protein [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 71.2 bits (173), Expect = 6.100e-9
Identity = 56/176 (31.82%), Postives = 88/176 (50.00%), Query Frame = 0
Query:  118 MRPDMGIWWYLMSEVFRQYQPYFRLILAAHPFLYLPPLAFRVLAGSATSKQHPLPEALLRLLYLVTASISMLFRPSPILTQQLSLAIALVAWHPDLLTALRPKLLLLSVGLGAPLILAPIMEYLWLDAQSGNANYLYFQTLVWT-VFHSLLVLEVTVVLVQHATDRNRVEEGSENR 293
            + P++G+WWY   EVF + + +F++   A P L + PL       S +    P    LL  + LV A +S  +  +      + L ++L A HP L     P +L L++G+ +  I+ P+M ++WL   SGNANY YFQTL+      SL V  V   LV+     +  E+   +R
Sbjct:  340 LSPNVGLWWYFFVEVFEEARSFFKIAFRASPLLLVLPL-------SVSFSHRP---QLLGHVLLVLAELSKQYPDA----SGIGLMLSLFAMHP-LTVKRMPYVLPLAIGVLSTSIMLPVMRHMWLTVGSGNANYYYFQTLICQFCATSLFVHFVRATLVRDRVLADHAEQEDRHR 500          
BLAST of NO02G02760 vs. NCBI_GenBank
Match: EJU04266.1 (PIG-U-domain-containing protein [Dacryopinax primogenitus])

HSP 1 Score: 70.9 bits (172), Expect = 7.900e-9
Identity = 75/266 (28.20%), Postives = 125/266 (46.99%), Query Frame = 0
Query:   36 SLSTSSKSTTARLVGMSMSTLQ-------LLGLLAWSD-PLMAIMLGLVALCVAGNMYNV---------ALAAAVLPSLLLVVLSPERR--------------AVVFYPEPMAMRPDMGIWWYLMSEVFRQYQPYFRLILAAHPFLYLPPLAFRVLAGSATSKQHPLPEALLRLLYLVTASISMLFRPSPILTQQLSLAIALVAWHPDLLTALRPKLLLLSVGLGAPLILAPIMEYLWLDAQSGNANYLYFQTLVWTVFHSLLVLE 271
            +LS+SS      L+ +  + LQ       LL +L++S  P + ++  LV + +AG    V         AL      +L +VVL+   R              A V  P+   + P+ G+WWY  +E+F QY+P+F L  + HP +Y+ P+  +        +  PL        + +   I   F+  P L+    L I+L+   P++ +  R  L+   + L A L+L P+  YLWLDA +GNAN+ Y  TLV+ + +   ++E
Sbjct:  143 ALSSSSLDNAFLLLALRFAALQQVSPSLILLAVLSFSSLPSILLLPPLVMILLAGPKPTVPLPKYSPKTALRIVAEFALYMVVLTGASRFVAGSWGWVLQTWGATVMLPD---LTPNPGLWWYFFTEMFDQYRPFFLLTFSLHPLIYVAPMCLKF-------QHDPL------FAFFLLQGIISTFKSYPTLS-DAGLYISLLGIFPEIYSHFRHPLVTALLHLHAALLL-PLFHYLWLDAGTGNANFFYASTLVFGLANGSTIVE 390          
The following BLAST results are available for this feature:
BLAST of NO02G02760 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM30401.12.400e-6151.53conserved unknown protein [Nannochloropsis gaditan... [more]
XP_009826801.12.600e-1236.48hypothetical protein H257_04115 [Aphanomyces astac... [more]
CBJ31446.11.000e-1134.57conserved unknown protein [Ectocarpus siliculosus][more]
XP_024575388.15.500e-1032.45gpi transamidase subunit pig-u family protein [Pla... [more]
GAY00730.19.400e-1034.44Hypothetical protein PINS_008552 [Pythium insidios... [more]
OQR97871.11.200e-934.57hypothetical protein ACHHYP_09876 [Achlya hypogyna... [more]
OQS07039.12.100e-932.69hypothetical protein THRCLA_00956 [Thraustotheca c... [more]
OXG23507.16.100e-927.07phosphatidylinositol glycan, class U [Cryptococcus... [more]
GBG29948.16.100e-931.82Phosphatidylinositol glycan anchor biosynthesis cl... [more]
EJU04266.17.900e-928.20PIG-U-domain-containing protein [Dacryopinax primo... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006920NSK006920Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G02760.1NO02G02760.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100026g27gene278Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G02760.1NO02G02760.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G02760 ID=NO02G02760|Name=NO02G02760|organism=Nannochloropsis oceanica|type=gene|length=1255bp
GCACACATCCGCCCTCAAGAACTAAAACAAAGTACACACATGACATGCTA
CAGACATGCCGCCAGACGATGTCATCGTCGCGGCTCTGGAGATGGTATTG
CAGCCGGTTCTCCTGCTGTCGTCAATCCATGCCTTGTCCTGCCTATCGTC
TGTTTTCCCATCATTGTCGACCTCCTCCAAGTCCACCACCGCCAGACTGG
TAGGCATGTCCATGTCCACGCTACAGCTCCTCGGTCTACTCGCCTGGTCG
GACCCCCTTATGGCAATCATGCTGGGACTGGTGGCTTTGTGCGTGGCCGG
TAACATGTACAATGTAGCTCTTGCCGCAGCGGTGCTGCCTTCGCTTTTGC
TTGTGGTGCTCTCCCCGGAGCGACGGGCAGTAGTATTTTACCCTGAGCCG
ATGGCGATGAGGCCTGACATGGGCATTTGGTGGTACCTCATGTCCGAAGT
ATTCCGGCAATACCAACCTTACTTCCGCCTGATCTTAGCGGCCCACCCCT
TTTTGTACTTGCCTCCCTTGGCCTTCCGAGTCCTTGCAGGCAGCGCGACG
TCGAAGCAACATCCCTTGCCCGAAGCATTACTCCGACTCCTTTACTTAGT
GACAGCTTCTATATCTATGCTCTTCCGTCCTTCTCCCATTCTGACACAAC
AGCTTTCTCTTGCCATCGCCCTTGTGGCGTGGCATCCAGACCTTCTGACG
GCGCTTCGACCAAAGCTTCTGCTTCTGAGCGTGGGGTTGGGGGCCCCTTT
GATCCTAGCACCCATCATGGAATACTTATGGTTAGATGCACAATCGGGAA
ATGCGAATTATTTGTATTTTCAGACATTGGTATGGACGGTCTTTCATTCG
TTGCTGGTGCTGGAGGTGACTGTAGTGCTTGTGCAGCATGCGACTGACAG
GAATCGAGTCGAGGAAGGAAGTGAGAATAGGACACAACGGACACAGAAAG
GAAGCAATGAGTTAAGGTAGCTGGAATGATTTGAATGTATATTTTCCTGT
TCTTGGATGGGTTCATCTATAGTGTGTGTAAGGATTGCTCCCAATAGGCC
AGAGACGACTTTTCCGATTTTCGGTCGCCGGTCGCACAAAGCCTGTGTTT
TATGTGTATCTTGTGTATAAGATTCGTAAACACCTGACTTAAATTGTGAT
TGCTAGTGCCTGAGTCTCTCCAAGGGCTGTTGACGGAGAAGTGAAAAGCG
TGGTCACAGGCACGCCGGACTGCCCCAGAGGGACAATTAAAGCCTTATAT
TTTGA
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protein sequence of NO02G02760.1

>NO02G02760.1-protein ID=NO02G02760.1-protein|Name=NO02G02760.1|organism=Nannochloropsis oceanica|type=polypeptide|length=305bp
MPPDDVIVAALEMVLQPVLLLSSIHALSCLSSVFPSLSTSSKSTTARLVG
MSMSTLQLLGLLAWSDPLMAIMLGLVALCVAGNMYNVALAAAVLPSLLLV
VLSPERRAVVFYPEPMAMRPDMGIWWYLMSEVFRQYQPYFRLILAAHPFL
YLPPLAFRVLAGSATSKQHPLPEALLRLLYLVTASISMLFRPSPILTQQL
SLAIALVAWHPDLLTALRPKLLLLSVGLGAPLILAPIMEYLWLDAQSGNA
NYLYFQTLVWTVFHSLLVLEVTVVLVQHATDRNRVEEGSENRTQRTQKGS
NELR*
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Synonyms
Publications