NO02G02580, NO02G02580 (gene) Nannochloropsis oceanica

Overview
NameNO02G02580
Unique NameNO02G02580
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1276
Alignment locationchr2:718940..720215 +

Link to JBrowse

Properties
Property NameValue
DescriptionMitochondrial ribosomal protein l27
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:718940..720215 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR019189Ribosomal_L27/L41_mit
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Homology
[Close]
BLAST of NO02G02580 vs. NCBI_GenBank
Match: EWM30388.1 (mitochondrial ribosomal protein l27 [Nannochloropsis gaditana])

HSP 1 Score: 194.9 bits (494), Expect = 1.300e-46
Identity = 91/106 (85.85%), Postives = 97/106 (91.51%), Query Frame = 0 
Query:    1 MPLLAGISTGFQRLSKYLSKAARKRLPLSPKRAGKGFYKGNKCASTGRVNSIGRFKLDERKRVELNVPDLTGFKLKPYVAPTVFKYPADAGIAWPPLTKKPTLFGI 107
            MPLLAGI+TGFQRLSKYLSKAARKRLPLSPKR GKGFYKGNKCASTGR+NSIGRF++DERKRVELNVPDLTGFKLKPYV+PTVFKYP DAGI WPP  K    FG+
Sbjct:    1 MPLLAGINTGFQRLSKYLSKAARKRLPLSPKRTGKGFYKGNKCASTGRINSIGRFRMDERKRVELNVPDLTGFKLKPYVSPTVFKYPVDAGIIWPPTKKTTNFFGV 106
[Close]
BLAST of NO02G02580 vs. NCBI_GenBank
Match: CBN73960.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 96.3 bits (238), Expect = 6.200e-17
Identity = 46/85 (54.12%), Postives = 59/85 (69.41%), Query Frame = 0 
Query:    1 MPLLAGISTGFQRLSKYLSKAARKRLPLSPKRAGKGFYKGNKCASTGRVNSIGRFKLDERKRVELNVPDLTGFKLKPYVAPTVFK 86
            MPL+  I TG  R+SKY+SK+ARKR+P++ K   K FYKG      G +NS GRF +D  KR+E+  PDL GFKLKPYV+  V+K
Sbjct:    1 MPLIGNIVTGGLRMSKYISKSARKRIPMTSKMGNKNFYKGKGATKEGTINSRGRFIVDPEKRLEIIAPDLDGFKLKPYVSKAVWK 85
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BLAST of NO02G02580 vs. NCBI_GenBank
Match: GAX16736.1 (hypothetical protein FisN_21Hh179 [Fistulifera solaris])

HSP 1 Score: 93.2 bits (230), Expect = 5.200e-16
Identity = 46/78 (58.97%), Postives = 59/78 (75.64%), Query Frame = 0 
Query:   12 QRLSKYLSKAARKRLPLSPKRAGKGFYKGNKCASTGRVNSIGRFKLDERKRVELNVPDLTGFKLKPYVAPTVFKYPAD 90
            + +SKYLSKAA+KRL L+ KRA KGFYKGN     GR+ S G+F +D  +R+EL +PDLTGFKLKPY+A +V K P +
Sbjct:   27 RHMSKYLSKAAKKRLVLTTKRAHKGFYKGNGATKEGRLTSKGKFIVDPLRRLELVIPDLTGFKLKPYIARSVPKVPPE 104
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BLAST of NO02G02580 vs. NCBI_GenBank
Match: GAX10481.1 (hypothetical protein FisN_21Lh179 [Fistulifera solaris])

HSP 1 Score: 92.4 bits (228), Expect = 8.900e-16
Identity = 46/78 (58.97%), Postives = 59/78 (75.64%), Query Frame = 0 
Query:   12 QRLSKYLSKAARKRLPLSPKRAGKGFYKGNKCASTGRVNSIGRFKLDERKRVELNVPDLTGFKLKPYVAPTVFKYPAD 90
            + +SKYLSKAA+KRL L+ KRA KGFYKGN     GR+ S G+F +D  +R+EL VPDLTGFKLKPY+A +V + P +
Sbjct:   27 RHMSKYLSKAAKKRLVLTTKRAHKGFYKGNGATKEGRLTSKGKFIVDPLRRLELVVPDLTGFKLKPYIARSVPRVPPE 104
[Close]
BLAST of NO02G02580 vs. NCBI_GenBank
Match: EJK60982.1 (hypothetical protein THAOC_18594, partial [Thalassiosira oceanica])

HSP 1 Score: 90.5 bits (223), Expect = 3.400e-15
Identity = 45/78 (57.69%), Postives = 56/78 (71.79%), Query Frame = 0 
Query:   12 QRLSKYLSKAARKRLPLSPKRAGKGFYKGNKCASTGRVNSIGRFKLDERKRVELNVPDLTGFKLKPYVAPTVFKYPAD 90
            + +SKYLSK+A KRLPL+ KRA KG+YKG  C S GR+ S G+F  D  K++ L VPDL GF LKPY+A TV K P +
Sbjct:  137 RHMSKYLSKSATKRLPLNTKRAKKGYYKGKGCTSEGRLTSKGKFIADPLKKLNLIVPDLEGFTLKPYIARTVDKRPPE 214
[Close]
BLAST of NO02G02580 vs. NCBI_GenBank
Match: XP_002296102.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >ACI64819.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 90.1 bits (222), Expect = 4.400e-15
Identity = 43/76 (56.58%), Postives = 56/76 (73.68%), Query Frame = 0 
Query:   14 LSKYLSKAARKRLPLSPKRAGKGFYKGNKCASTGRVNSIGRFKLDERKRVELNVPDLTGFKLKPYVAPTVFKYPAD 90
            +SKYLSK+A KRLPL  KRA KG+YKG  C S GR+ S G+F  +  K+++L VPDL GFKLKPY+A ++ K P +
Sbjct:   80 MSKYLSKSATKRLPLDTKRAKKGYYKGKGCTSEGRLTSKGKFIANPLKKLQLIVPDLEGFKLKPYIAKSISKVPPE 155
[Close]
BLAST of NO02G02580 vs. NCBI_GenBank
Match: POM73142.1 (Hypothetical protein PHPALM_10038 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 75.5 bits (184), Expect = 1.100e-10
Identity = 40/81 (49.38%), Postives = 53/81 (65.43%), Query Frame = 0 
Query:    1 MPLLAGISTGFQRLSKYLSKAARKRLPLSPKRAGKGFYKGNKCASTGRVNSIGRFKLDERKRVELNVPDLTGFKLKPYVAP 82
            M LL G+ TGF R SK+    +    PL+ KRA + FYKGN C + G+    GR+ +D+ K ++L VPDLTGFKLK YV+P
Sbjct:    1 MGLLDGLITGFARKSKF--GRSHSLRPLTSKRANRRFYKGNGCRNEGKHAKRGRYVVDQDKLLQLEVPDLTGFKLKAYVSP 79
[Close]
BLAST of NO02G02580 vs. NCBI_GenBank
Match: XP_024579646.1 (mitochondrial ribosomal protein l27 [Plasmopara halstedii] >CEG43277.1 mitochondrial ribosomal protein l27 [Plasmopara halstedii])

HSP 1 Score: 73.6 bits (179), Expect = 4.300e-10
Identity = 39/81 (48.15%), Postives = 52/81 (64.20%), Query Frame = 0 
Query:    1 MPLLAGISTGFQRLSKYLSKAARKRLPLSPKRAGKGFYKGNKCASTGRVNSIGRFKLDERKRVELNVPDLTGFKLKPYVAP 82
            M LL G+  GF R SK+    +    PL+ KRA + FYKGN C + G     GR+ +D+ K+++L VPDLTGFKLK YV+P
Sbjct:    1 MGLLDGLVLGFTRKSKF--GRSHSLRPLTSKRANRRFYKGNGCRNEGTHAKRGRYVVDKNKQLQLEVPDLTGFKLKAYVSP 79
[Close]
BLAST of NO02G02580 vs. NCBI_GenBank
Match: XP_008911791.1 (hypothetical protein PPTG_15794 [Phytophthora parasitica INRA-310] >ETI37422.1 hypothetical protein F443_16582 [Phytophthora parasitica P1569] >ETK77641.1 hypothetical protein L915_16113 [Phytophthora parasitica] >ETL31086.1 hypothetical protein L916_16009 [Phytophthora parasitica] >ETL84339.1 hypothetical protein L917_15805 [Phytophthora parasitica] >ETM37515.1 hypothetical protein L914_15935 [Phytophthora parasitica] >ETN02834.1 hypothetical protein PPTG_15794 [Phytophthora parasitica INRA-310] >ETO66195.1 hypothetical protein F444_16557 [Phytophthora parasitica P1976] >ETP07270.1 hypothetical protein F441_16409 [Phytophthora parasitica CJ01A1] >ETP35352.1 hypothetical protein F442_16423 [Phytophthora parasitica P10297] >KUF95739.1 Alpha-aminoadipic semialdehyde synthase [Phytophthora nicotianae])

HSP 1 Score: 72.8 bits (177), Expect = 7.300e-10
Identity = 39/81 (48.15%), Postives = 52/81 (64.20%), Query Frame = 0 
Query:    1 MPLLAGISTGFQRLSKYLSKAARKRLPLSPKRAGKGFYKGNKCASTGRVNSIGRFKLDERKRVELNVPDLTGFKLKPYVAP 82
            M LL G+ TGF R SK+    +    PL+ KRA + FYKGN C + G+    GR+ +D+ K ++L VPDLT FKLK YV+P
Sbjct:    1 MGLLDGLITGFARKSKF--GRSHSLRPLTSKRANRRFYKGNGCRNEGKHAKRGRYVVDQDKLLQLEVPDLTDFKLKAYVSP 79
[Close]
BLAST of NO02G02580 vs. NCBI_GenBank
Match: KUF90241.1 (hypothetical protein AM587_10006264 [Phytophthora nicotianae])

HSP 1 Score: 72.8 bits (177), Expect = 7.300e-10
Identity = 39/81 (48.15%), Postives = 52/81 (64.20%), Query Frame = 0 
Query:    1 MPLLAGISTGFQRLSKYLSKAARKRLPLSPKRAGKGFYKGNKCASTGRVNSIGRFKLDERKRVELNVPDLTGFKLKPYVAP 82
            M LL G+ TGF R SK+    +    PL+ KRA + FYKGN C + G+    GR+ +D+ K ++L VPDLT FKLK YV+P
Sbjct:  465 MGLLDGLITGFARKSKF--GRSHSLRPLTSKRANRRFYKGNGCRNEGKHAKRGRYVVDQDKLLQLEVPDLTDFKLKAYVSP 543
The following BLAST results are available for this feature:
BLAST of NO02G02580 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM30388.11.300e-4685.85mitochondrial ribosomal protein l27 [Nannochlorops... [more]
CBN73960.16.200e-1754.12conserved unknown protein [Ectocarpus siliculosus][more]
GAX16736.15.200e-1658.97hypothetical protein FisN_21Hh179 [Fistulifera sol... [more]
GAX10481.18.900e-1658.97hypothetical protein FisN_21Lh179 [Fistulifera sol... [more]
EJK60982.13.400e-1557.69hypothetical protein THAOC_18594, partial [Thalass... [more]
XP_002296102.14.400e-1556.58predicted protein [Thalassiosira pseudonana CCMP13... [more]
POM73142.11.100e-1049.38Hypothetical protein PHPALM_10038 [Phytophthora pa... [more]
XP_024579646.14.300e-1048.15mitochondrial ribosomal protein l27 [Plasmopara ha... [more]
XP_008911791.17.300e-1048.15hypothetical protein PPTG_15794 [Phytophthora para... [more]
KUF90241.17.300e-1048.15hypothetical protein AM587_10006264 [Phytophthora ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR002ngnoR002Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006904NSK006904Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G02580.1NO02G02580.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574341gene_848Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100026g45gene260Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G02580.1NO02G02580.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G02580 ID=NO02G02580|Name=NO02G02580|organism=Nannochloropsis oceanica|type=gene|length=1276bp
CCTTTTCATACTGCTTATACGGGTGTGGTGTGGTGTAGTGGAGAGGCTGA
GTAAGACTTACTGCGTGAGTCCGAACACAAGCAAGAGGACGCGCACGTCC
GCCGATCAGTCACGTTGATTCGTCGAGCGGTTTGCCGGAGAGAGCAAGGC
ATGATGATACCTAGCATTGTCTTGCCCAGCACAACACACAACACGAGACC
TCACCGCAGTCATTCTTTACCATACACAGCAGCTCCCTACTCACCTGGCC
GAGGCAACGTGAGGGCCGGAAGCAAGGAGCAACGCGTGTGTGGGCATCAA
CAAGCAGCTGCAGCTTCCTATCATCCTCCATCGCCTCCTTCTCCTTGCCT
ACCCCGAGACTCCACCGTTAGCATCACCAACCCACCATGCCTTTGCTCGC
AGGCATAAGCACGGGCTTCCAGCGTCTCTCGAAATACTTGTCCAAAGCAG
CACGGAAACGGCTGCCTTTAAGTCCGAAGCGGGCAGGTAAAGGGTTCTAC
AAGGGAAACAAGTGTGCCTCCACGGGGCGGGTCAACAGCATTGgtacgtg
catcggaagaattgttggatggaaggctaccaatggatgaaaggatagga
gacacgttgactgtatgtggctcgcttccttgaatttgggtcactttcaa
atgctttcctgcccgggaagagggcgcggtgttcaagcagtaagcgggcg
gagacgcctctgccactatgcttatcgggtgccgcatcttcacgtgagtc
aaatgatctgcactgttttcaggatgcatgcagagcccttgtgcatatat
ttaatcaatattcattcgcatacaaaaacacacatacaaacacatataat
atataaataatttacatactgagacatttgtatttatttcttctatcttc
aatagGTCGCTTCAAGCTAGATGAGCGCAAGAGAGTTGAGCTGAATGTCC
CAGACCTGACCGGGTTCAAGgtacgtcaatcaaaggacatgtgatacatg
cgtattttggggtataaggctgccgcacggggtatggacctataaccgtg
actaaggagctatccttttaattttgattttattttaatcatgtttattt
ctctttctcacaccgctaccagCTGAAGCCCTATGTGGCCCCGACCGTTT
TCAAGTACCCCGCCGATGCTGGCATCGCCTGGCCGCCGCTTACGAAGAAG
CCCACATTGTTCGGCATATGACGAGGATGAAGAGGAATGCGAACAAGAAA
ACATCAAGAAAGAAAAACGAATGATT
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protein sequence of NO02G02580.1

>NO02G02580.1-protein ID=NO02G02580.1-protein|Name=NO02G02580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=107bp
MPLLAGISTGFQRLSKYLSKAARKRLPLSPKRAGKGFYKGNKCASTGRVN
SIGRFKLDERKRVELNVPDLTGFKLKPYVAPTVFKYPADAGIAWPPLTKK
PTLFGI*
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Synonyms
Publications