NO02G02450, NO02G02450 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO02G02450
Unique Name	NO02G02450
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	798
Alignment location	chr2:678854..679651 -

Link to JBrowse

Properties


Property Name	Value
Description	Iron-sulfur cluster assembly 2 mitochondrial-like protein

Mutants

Expression

Analysis:

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr2	genome	chr2:678854..679651 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
PRJNA769958	2024-08-13
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR035903	HesB-like_dom_sf
IPR000361	FeS_biogenesis

Vocabulary: **Biological Process**
Term	Definition
GO:0019538	protein metabolic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0005488	binding
GO:0005198	structural molecule activity

Homology

[Close]

BLAST of NO02G02450 vs. NCBI_GenBank
Match: EWM30391.1 (iron-sulfur cluster assembly 2 mitochondrial-like protein [Nannochloropsis gaditana])

HSP 1 Score: 206.5 bits (524), Expect = 8.300e-50
Identity = 94/115 (81.74%), Postives = 111/115 (96.52%), Query Frame = 0

Query:   93 TNQCIRRIKALQANTGKQDLKLRLSVEGGGCSGFTYSFTMEEGPLQEEDRVFGREGGQLVIDEGSLEFVKGATVDFTEDMMRSAFAVVNNPLSESACGCGSSFAVKNFEKNPAID 208
            TN CI+RIKALQ  TGK++LKLRLSVEGGGCSGFTY+FTME+GP++++D+V+GREG Q+V+DEGSLEFV+G+TVDFTEDMMRSAFAVV+NPLSESACGCGSSFA+KNFEKNPAID
Sbjct:   79 TNACIKRIKALQVKTGKENLKLRLSVEGGGCSGFTYTFTMEDGPVEDDDKVYGREGAQVVVDEGSLEFVRGSTVDFTEDMMRSAFAVVSNPLSESACGCGSSFAMKNFEKNPAID 193

[Close]

BLAST of NO02G02450 vs. NCBI_GenBank
Match: GAQ82066.1 (ISCA-like protein [Klebsormidium nitens])

HSP 1 Score: 128.3 bits (321), Expect = 2.900e-26
Identity = 65/108 (60.19%), Postives = 80/108 (74.07%), Query Frame = 0

Query:   93 TNQCIRRIKALQANTG--KQDLKLRLSVEGGGCSGFTYSFTMEEGPLQEEDRVFGREGGQLVIDEGSLEFVKGATVDFTEDMMRSAFAVVNNPLSESACGCGSSFAVK 199
            T  C +R+K LQ   G     L LRLSVEGGGCSGF YSF++ +  LQ +DRVF R G QL++D+ S  FVKGATVDF+E+++RSAF VV+NP S SACGCG+SFA K
Sbjct:   65 TESCAQRLKELQQEEGVSPDQLMLRLSVEGGGCSGFQYSFSL-DSKLQPDDRVFRRNGAQLLVDKVSYAFVKGATVDFSEELIRSAFTVVDNPNSTSACGCGTSFAAK 171

[Close]

BLAST of NO02G02450 vs. NCBI_GenBank
Match: XP_002286608.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED96249.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 121.7 bits (304), Expect = 2.700e-24
Identity = 62/132 (46.97%), Postives = 88/132 (66.67%), Query Frame = 0

Query:   93 TNQCIRRIKALQANTGKQD-LKLRLSVEGGGCSGFTYSFTM---------------EEGPLQ-EEDRVFGREGGQLVIDEGSLEFVKGATVDFTEDMMRSAFAVVNNPLSESACGCGSSFAVKNFEKNPAID 208
            T  C  RIK L +     D + LRL V+ GGCSGF Y F +               E+G +  +ED +F ++G ++V+D+ SLE ++G+T+D+ ++M+RS+FAV++NP SESACGCGSSFAVKNFE NPA+D
Sbjct:   40 TASCAARIKQLASTRPNPDSIYLRLYVDAGGCSGFQYKFLLLSEDNDMNNSLEDDEEDGAIDPDEDIIFVKDGMRVVVDQTSLELLRGSTIDYVQEMIRSSFAVMSNPQSESACGCGSSFAVKNFETNPALD 171

[Close]

BLAST of NO02G02450 vs. NCBI_GenBank
Match: GAU89429.1 (hypothetical protein RvY_01980-1 [Ramazzottius varieornatus])

HSP 1 Score: 119.0 bits (297), Expect = 1.700e-23
Identity = 51/103 (49.51%), Postives = 79/103 (76.70%), Query Frame = 0

Query:   96 CIRRIKALQANTGKQDLKLRLSVEGGGCSGFTYSFTMEEGPLQEEDRVFGREGGQLVIDEGSLEFVKGATVDFTEDMMRSAFAVVNNPLSESACGCGSSFAVK 199
            C++R+K LQ+     +L LR+ VEGGGCSGF Y+FT++   + E+DRVF ++G ++V+D  SL+F+KGAT+D+  +++RSAF +++NP +E  C CGSSF+VK
Sbjct:   97 CVKRLKKLQSEEPDTNLMLRIGVEGGGCSGFQYNFTLDH-KVNEDDRVFEKDGAKIVVDTMSLDFIKGATIDWNTELIRSAFRILDNPKAEHGCSCGSSFSVK 198

[Close]

BLAST of NO02G02450 vs. NCBI_GenBank
Match: XP_018566595.1 (iron-sulfur cluster assembly 2 homolog, mitochondrial [Anoplophora glabripennis])

HSP 1 Score: 118.6 bits (296), Expect = 2.300e-23
Identity = 56/106 (52.83%), Postives = 79/106 (74.53%), Query Frame = 0

Query:   93 TNQCIRRIKALQANTGKQDLKLRLSVEGGGCSGFTYSFTMEEGPLQEEDRVFGREGGQLVIDEGSLEFVKGATVDFTEDMMRSAFAVVNNPLSESACGCGSSFAVK 199
            T++CI R+K +       D  LR+SVEGGGCSGF Y F + +  L ++D+VF R G ++VIDE SLE+VKGATVD+ E+++R++F +VNNPL+E  C CG+SFAV+
Sbjct:   43 TDKCIERLKKI---VNGSDSFLRVSVEGGGCSGFQYKFDL-DNKLTDDDKVFERNGAKVVIDETSLEYVKGATVDYQEELIRASFKIVNNPLAEQGCSCGASFAVR 144

[Close]

BLAST of NO02G02450 vs. NCBI_GenBank
Match: XP_008195804.1 (PREDICTED: iron-sulfur cluster assembly 2 homolog, mitochondrial [Tribolium castaneum])

HSP 1 Score: 117.9 bits (294), Expect = 3.900e-23
Identity = 53/106 (50.00%), Postives = 80/106 (75.47%), Query Frame = 0

Query:   93 TNQCIRRIKALQANTGKQDLKLRLSVEGGGCSGFTYSFTMEEGPLQEEDRVFGREGGQLVIDEGSLEFVKGATVDFTEDMMRSAFAVVNNPLSESACGCGSSFAVK 199
            T+ C+ R+K +  N+   D  LR+SV+GGGCSGF Y F + +  + E+D++F + G ++VIDE SL+FV+GATVD+ E++++S+F +VNNPL+E  C CGSSFAV+
Sbjct:   44 TDTCVERLKNISKNS---DEFLRVSVDGGGCSGFQYKFDL-DSKINEDDKIFEKNGAKVVIDETSLDFVRGATVDYREELIKSSFRIVNNPLAEQGCSCGSSFAVR 145

[Close]

BLAST of NO02G02450 vs. NCBI_GenBank
Match: KYB26466.1 (Iron-sulfur cluster assembly 2 homolog, mitochondrial-like Protein [Tribolium castaneum])

HSP 1 Score: 117.9 bits (294), Expect = 3.900e-23
Identity = 53/106 (50.00%), Postives = 80/106 (75.47%), Query Frame = 0

Query:   93 TNQCIRRIKALQANTGKQDLKLRLSVEGGGCSGFTYSFTMEEGPLQEEDRVFGREGGQLVIDEGSLEFVKGATVDFTEDMMRSAFAVVNNPLSESACGCGSSFAVK 199
            T+ C+ R+K +  N+   D  LR+SV+GGGCSGF Y F + +  + E+D++F + G ++VIDE SL+FV+GATVD+ E++++S+F +VNNPL+E  C CGSSFAV+
Sbjct:   42 TDTCVERLKNISKNS---DEFLRVSVDGGGCSGFQYKFDL-DSKINEDDKIFEKNGAKVVIDETSLDFVRGATVDYREELIKSSFRIVNNPLAEQGCSCGSSFAVR 143

[Close]

BLAST of NO02G02450 vs. NCBI_GenBank
Match: PTQ33426.1 (hypothetical protein MARPO_0089s0053 [Marchantia polymorpha])

HSP 1 Score: 117.9 bits (294), Expect = 3.900e-23
Identity = 53/108 (49.07%), Postives = 81/108 (75.00%), Query Frame = 0

Query:   93 TNQCIRRIKALQANTGKQDLK--LRLSVEGGGCSGFTYSFTMEEGPLQEEDRVFGREGGQLVIDEGSLEFVKGATVDFTEDMMRSAFAVVNNPLSESACGCGSSFAVK 199
            T  C++R++ +Q   G    K  LRLSV+GGGCSGF Y+F++++  L+ +DR+F ++G ++V+DE SL FVKGA VDF+E+++R++F V +NP +ES CGCG+SF  K
Sbjct:  113 TESCVKRLREIQQEEGPDGQKKMLRLSVDGGGCSGFLYNFSLDDS-LKPDDRLFEKDGAKVVVDEVSLSFVKGAVVDFSEELIRASFTVASNPNAESGCGCGASFTAK 219

[Close]

BLAST of NO02G02450 vs. NCBI_GenBank
Match: PNR43739.1 (hypothetical protein PHYPA_016121 [Physcomitrella patens])

HSP 1 Score: 117.5 bits (293), Expect = 5.000e-23
Identity = 55/108 (50.93%), Postives = 82/108 (75.93%), Query Frame = 0

Query:   93 TNQCIRRIKALQANTGK--QDLKLRLSVEGGGCSGFTYSFTMEEGPLQEEDRVFGREGGQLVIDEGSLEFVKGATVDFTEDMMRSAFAVVNNPLSESACGCGSSFAVK 199
            T+ C+RRI+ ++   G   ++  LRLSVEGGGCSGF Y+F +++  + ++D +F R+G +LV+D+ SL F+KGATVDFT++++RS+FAV  NP + SACGCG+SF  K
Sbjct:  121 TDNCVRRIREIKLEDGPTGENKMLRLSVEGGGCSGFLYNFALDD-KVNKDDTIFERDGSKLVVDDISLGFIKGATVDFTDELIRSSFAVTINPDAASACGCGASFNAK 227

[Close]

BLAST of NO02G02450 vs. NCBI_GenBank
Match: OQS05231.1 (iron-sulfur cluster assembly protein [Thraustotheca clavata])

HSP 1 Score: 116.7 bits (291), Expect = 8.600e-23
Identity = 52/101 (51.49%), Postives = 78/101 (77.23%), Query Frame = 0

Query:  100 IKALQANTGKQDLK--LRLSVEGGGCSGFTYSFTMEEGPLQEEDRVFGREGGQLVIDEGSLEFVKGATVDFTEDMMRSAFAVVNNPLSESACGCGSSFAVK 199
            +K L +   K++ K  LR++VEGGGCSGF Y  T+E+G L EED+ F ++G ++V+DE SLE +KG+TVD+ ++++RS+FAV+NNP + S CGCG+SF +K
Sbjct:   24 VKQLHSLNEKEETKKYLRVAVEGGGCSGFQYVLTLEDGALDEEDQTFEKDGAKVVVDETSLELLKGSTVDYVQELIRSSFAVINNPNAVSGCGCGTSFELK 124

The following BLAST results are available for this feature:

BLAST of NO02G02450 vs. NCBI_GenBank

BLAST of NO02G02450 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
EWM30391.1	8.300e-50	81.74	iron-sulfur cluster assembly 2 mitochondrial-like ...	[more]
GAQ82066.1	2.900e-26	60.19	ISCA-like protein [Klebsormidium nitens]	[more]
XP_002286608.1	2.700e-24	46.97	predicted protein [Thalassiosira pseudonana CCMP13...	[more]
GAU89429.1	1.700e-23	49.51	hypothetical protein RvY_01980-1 [Ramazzottius var...	[more]
XP_018566595.1	2.300e-23	52.83	iron-sulfur cluster assembly 2 homolog, mitochondr...	[more]
XP_008195804.1	3.900e-23	50.00	PREDICTED: iron-sulfur cluster assembly 2 homolog,...	[more]
KYB26466.1	3.900e-23	50.00	Iron-sulfur cluster assembly 2 homolog, mitochondr...	[more]
PTQ33426.1	3.900e-23	49.07	hypothetical protein MARPO_0089s0053 [Marchantia p...	[more]
PNR43739.1	5.000e-23	50.93	hypothetical protein PHYPA_016121 [Physcomitrella ...	[more]
OQS05231.1	8.600e-23	51.49	iron-sulfur cluster assembly protein [Thraustothec...	[more]

Pages

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL016	nonsL016	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR032	ncniR032	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR002	ngnoR002	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR000	ngnoR000	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK006888	NSK006888	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO02G02450.1	NO02G02450.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|624605	gene_834	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100026g58	gene247	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO02G02450.1	NO02G02450.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO02G02450 ID=NO02G02450|Name=NO02G02450|organism=Nannochloropsis oceanica|type=gene|length=798bp
AACAGGCTCTTCGTAGCGGACGAAAGCTTGAAACGCAAGCACCGGAAGCC
CAGCCTAACTCCTTTCAAAGCCAAAACAAGTACACACGATTAGGGACGAG
GGCGCCTTCAGTTGCTCCTCTACTTCCACAGCAGCCTTCCTAGACCGCAG
CGCCTCAGCATCACCGCAATAAGCATGCTGCCAAGGCGTCTTAGCGCCAT
CGGAGCTTTGCGTTCCAGTTTTAGAGACATGCACGCGGCAGTCACATTCG
CCAATACAAGACCCACCGCAGCAGGAACGCTTGCACAACCTTTATCATTC
CCTTTGTTAGGGTTAGCCGTAGAACCACCACACTTGCCATGGACCCACCA
GCAAGCTCGCCGGCTTCTGAGCAGCAGCAGCAGTGCTGCCAGCAATCAGA
GCAGCAGTAATGCGAGCAGCGGCGTCTCGCTGGAGGACGACGTGGTAGTG
ACGAATCAATGCATCCGGCGCATTAAGGCCTTACAGGCCAACACGGGCAA
GCAAGACCTTAAGCTCCGTCTGTCCGTCGAAGGAGGAGGCTGCTCAGGCT
TCACATACTCCTTCACCATGGAAGAGGGGCCGCTTCAGGAGGAGGACCGG
GTGTTTGGGCGGGAGGGAGGGCAATTGGTAATAGATGAGGGGTCACTGGA
ATTTGTCAAGGGCGCGACGGTGGATTTCACGGAGGATATGATGCGAAGCG
CATTTGCAGTAGTGAATAACCCTCTGTCGGAATCGGCATGTGGATGTGGG
AGTTCGTTTGCAGTCAAAAATTTCGAGAAAAACCCGGCGATCGATTAG

protein sequence of NO02G02450.1

>NO02G02450.1-protein ID=NO02G02450.1-protein|Name=NO02G02450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=208bp
MLPRRLSAIGALRSSFRDMHAAVTFANTRPTAAGTLAQPLSFPLLGLAVE
PPHLPWTHQQARRLLSSSSSAASNQSSSNASSGVSLEDDVVVTNQCIRRI
KALQANTGKQDLKLRLSVEGGGCSGFTYSFTMEEGPLQEEDRVFGREGGQ
LVIDEGSLEFVKGATVDFTEDMMRSAFAVVNNPLSESACGCGSSFAVKNF
EKNPAID*

Synonyms

Publications