NO02G02240, NO02G02240 (gene) Nannochloropsis oceanica

Overview
NameNO02G02240
Unique NameNO02G02240
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2448
Alignment locationchr2:626105..628552 -

Link to JBrowse

Properties
Property NameValue
DescriptionDna polymerase kappa
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:626105..628552 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003684damaged DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
GO:0006259DNA metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR036775DNA_pol_Y-fam_lit_finger_sf
IPR001126DNA_repair_prot_UmuC-like
IPR017961DNA_pol_Y-fam_little_finger
Homology
BLAST of NO02G02240 vs. NCBI_GenBank
Match: EWM30435.1 (dna polymerase kappa [Nannochloropsis gaditana])

HSP 1 Score: 713.8 bits (1841), Expect = 6.200e-202
Identity = 399/629 (63.43%), Postives = 450/629 (71.54%), Query Frame = 0
Query:  140 ATGNTSDTRHFYTFLNDKAGMDENKRSKEEVEKIVHEASKNSKFFLAQQRNDVKIQERIRGIKSKLRTLSEPLRRALESEADKRLIAAEKSRRSYTQVCVVIDLDAFFTSVEERDEPSLKAVPFAVGGGVICTANYEARKYGVRSAMPEFIARKLCPQLLVRQTRFETYSHVAEQTRMIFKEYDPHFRAGSLDEAYLDLTACVQGLVRERGGEVPF------GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYWSVAEAVVAEIRRRICEVTGVTASAGIATSFCLAKIASNERKPDGQYRVGNVGGFLRHLPVRKVSGIGRITERCLVAGLEIGTCWELWSKRALLYHVYTHQTAHWLVCKSVGLDGXXXXXXXXXXXXXXXXXXXXXGISRERTFAALSRKDDLLEKLRMICDSLAADMAREGLKAKSITLKLKNSDFAITTRAKSCAFYVSTSQELYQHSLSLLLPQLPITLRLMGVRASHFQPKPQAPPKGQGCLEGYVVTSGPNTAVAAGAASGEA-------AAGDLSPFVSSSSYSSPSSL---------PAASQSEAPIVP-----PAYSCPVCSRCLSVGLHDFNQHVDDCLRASDPHF 742
            A  +T  TRHFYTFL DKAGMDE KRS+EEVE+IVHEASKNSKFFLAQQRND+K+QERI+ ++SKL  LSEPLRR+LE+EAD+ L AAEK+ R++ QVCVV+DLDAFFTSVEERDEP+L+ VPFAVGGGVI TANYEARKYGVRSAMP FIARKLCPQLLVR TRFE Y  VAEQTR IF++YDP FRAGSLDEAYLDLTA V   V ++GGE P                                                          YW VAE VV EIRRRI  VTGVTASAGIATSFCLAK+ASNE KP+GQ+RVG+V  FLR  PVRKVSGIGRITERCLVAGL++ TC++LW+KRALLYHVYT QTA WL+CKSVGLDG                     GISRERTFAALSRK+DLLEKLR+ICDSLAADMAREGLKAK++TLKLK+SDFA+TTRAK+CAFYVSTSQELYQH+LSLLLPQLP+TLRLMGVRASHFQPKPQAPPKGQGCLE YV T G   A+A    SG A       + G       S S+S+   L         PA    EA         P Y+CP+C++ LSV L + N+HVD CLR SDP+F
Sbjct:  126 ALDSTRHTRHFYTFLGDKAGMDEKKRSREEVERIVHEASKNSKFFLAQQRNDLKVQERIQVMQSKLNMLSEPLRRSLEAEADRELAAAEKAYRTWRQVCVVVDLDAFFTSVEERDEPALREVPFAVGGGVISTANYEARKYGVRSAMPLFIARKLCPQLLVRSTRFEAYQTVAEQTRAIFRDYDPRFRAGSLDEAYLDLTAYVHAAVGDQGGEPPTPEEKPGTPLFAPVTALSSGFRGVEDNEGEGGAAWGAMGVDEEEEEVRERAIQEREASYWGVAERVVEEIRRRIHGVTGVTASAGIATSFCLAKMASNENKPNGQFRVGDVASFLRDAPVRKVSGIGRITERCLVAGLDVQTCFQLWAKRALLYHVYTPQTARWLLCKSVGLDG---GGLVDPEEGPGGQRTGRKGISRERTFAALSRKEDLLEKLRLICDSLAADMAREGLKAKNLTLKLKSSDFAVTTRAKNCAFYVSTSQELYQHALSLLLPQLPVTLRLMGVRASHFQPKPQAPPKGQGCLEAYVAT-GLEAAMAERPPSGSAKRVASPSSLGRPPRLGESGSFSTGPPLLVVDADLLSPAGGGKEATRATVTKQVPVYTCPLCNQRLSVVLSELNRHVDSCLRESDPYF 750          
BLAST of NO02G02240 vs. NCBI_GenBank
Match: CCA14130.1 (DNA polymerase kappa putative [Albugo laibachii Nc14])

HSP 1 Score: 287.0 bits (733), Expect = 1.900e-73
Identity = 206/610 (33.77%), Postives = 313/610 (51.31%), Query Frame = 0
Query:  136 PTDPATGNTSDT-----RHFYTFLNDKAGMDENKRSKEEVEKIVHEASKNSKFFLAQQRNDVKIQERIRGIKSKLRTLSEPLRRALESEADKRLIAAEKSRRSYTQVCVVIDLDAFFTSVEERDEPSLKAVPFAVGG-GVICTANYEARKYGVRSAMPEFIARKLCPQLLVRQTRFETYSHVAEQTRMIFKEYDPHFRAGSLDEAYLDLTACVQGLVRERGGEVPFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYWSVAEAVVAEIRRRICEVTGVTASAGIATSFCLAKIASNERKPDGQYRVGN----VGGFLRHLPVRKVSGIGRITERCLVAGLEIGTCWELWSKRALLYHVYTHQTAHWLVCKSVGLDGXXXXXXXXXXXXXXXXXXXXXGISRERTFAALSRKDDLLEKLRMICDSLAADMAREGLKAKSITLKLKNSDFAITTRAKSCAFYVSTSQELYQHSLSLLLPQLPITLRLMGVRASHFQPKPQAPPKGQGCLEGYVVTSGPNTAVAAGAASGEAAAGDLSPFVSSSSYSSPSSLPAASQSEAPIVPPAYSCPVCSRCL-SVGLHDFNQHVDDCL 735
            P D    +T+D         + F  +KAGM +   + E + K V+E SK+S FF    +N+ K+ +RI+ ++ ++  L++P  R LE+  D+ +    + RR  T++ VVID+D F+ +VE RD P L+ VP AVG  G+I T NYEARK+GVRSAMP FI +KLCP L+    R E YS +A++ R IF  YDP+F A SLDEA LDLT   +   R+   ++                                                        +A A+V+EIR+RI E T +TASAGIA +  LAKI SN  KP+GQ+ +      +  F+R LPVRKV GIG++ E+ ++A L I T  E++ +RA+L+HV+  +TA WL+   +G+                         SRE TF A+S  + L +    IC+ LA D+A + + A++ITLKLK +DF++ TR+ +    + + + L Q +L LL  ++PI+LRL+G+RA+   P  Q     Q  ++   +T         GA     +  D       S+ S+ S+     ++ AP       CP+C   + +  L   N+H+D C+
Sbjct:   39 PPDKKKKDTNDKEQKLGNELFVFTAEKAGMAD--VNAEHLRKTVYEMSKDSVFFKNSMKNNDKVDQRIKQMQEQVAKLTQPKIRFLEARIDEIVALQLECRRDLTRIKVVIDMDMFYAAVEMRDNPILRHVPLAVGSIGMISTTNYEARKFGVRSAMPGFIGKKLCPDLVFTPVRMEKYSAIAQEIRQIFAVYDPNFTAFSLDEAALDLTDYTREHWRKYVSQLSL-------------------------KDWNHDGWMQDCETRQEGGHEMPESLTMKIASAIVSEIRQRIFEETQLTASAGIAVNTMLAKICSNIEKPNGQFALEGSKEVILEFIRELPVRKVGGIGKVMEK-ILAALNITTMQEVFDRRAVLFHVFKERTATWLLRTCLGIQ-------------EQQSESERKSYSRETTFKAVSDFESLKQICASICEHLAQDLAEDNVAARNITLKLKCADFSVRTRSVTLNTSIQSCKRLLQVALDLLKREMPISLRLLGIRAASLIPSVQREETNQ--VQKRQLTIQDCKMTTEGALD---SMKDFGAQEEESALSNDSNKNVDKEAYAP-------CPICQEMIKTASLIAVNRHIDKCI 595          
BLAST of NO02G02240 vs. NCBI_GenBank
Match: CCI48937.1 (unnamed protein product [Albugo candida] >CCI48944.1 unnamed protein product [Albugo candida])

HSP 1 Score: 283.9 bits (725), Expect = 1.600e-72
Identity = 200/591 (33.84%), Postives = 301/591 (50.93%), Query Frame = 0
Query:  151 YTFLNDKAGMDENKRSKEEVEKIVHEASKNSKFFLAQQRNDVKIQERIRGIKSKLRTLSEPLRRALESEADKRLIAAEKSRRSYTQVCVVIDLDAFFTSVEERDEPSLKAVPFAVGG-GVICTANYEARKYGVRSAMPEFIARKLCPQLLVRQTRFETYSHVAEQTRMIFKEYDPHFRAGSLDEAYLDLTACVQGLVRERGGEVPFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYWSVAEAVVAEIRRRICEVTGVTASAGIATSFCLAKIASNERKPDGQYRVGN----VGGFLRHLPVRKVSGIGRITERCLVAGLEIGTCWELWSKRALLYHVYTHQTAHWLVCKSVGLDGXXXXXXXXXXXXXXXXXXXXXGISRERTFAALSRKDDLLEKLRMICDSLAADMAREGLKAKSITLKLKNSDFAITTRAKSCAFYVSTSQELYQHSLSLLLPQLPITLRLMGVRASHFQPKPQAPPKGQGCLEGYVVTSGPNTAVAAGAASGEAAAGDLSPFVSSSSYSSPSSLPAASQSEAPIVPPAYS-CPVCSRCLSV-GLHDFNQHVDDCL 735
            + F   KAGM +   + E + K V+E SK+S FF    +N+ K+  RI+ ++ ++  L+    R LE+  D+ +    + RR  T++ VVID+D F+ +VE RD P L+ VP AVG  G+I T NYEARK+GVRSAMP FI +KLCP L+    R E YS +A++ R IF  YDP+F A SLDEA LDLT  ++                                                                  +A A+V+EIR+RI + T +TASAGIA +  LAKI SN  KP+GQ  +      V  F+R LPVRKV GIG++ E+ ++A L + T  E++ +RA+L+HV+  +TA WL+  S+G+                         SRE TF A+S  D L +    IC+ LA D+A + + A++ITLKLK +DF++ TR+ +    + + + L Q +L LL  ++PI+LRL+GVRA+   P  Q     Q       +     T              DL P     +    S++  ++ ++  +   AY+ CP+C++ +    L   N+H+D+C+
Sbjct:   50 FVFTASKAGMGD--VNAEHLRKTVYEMSKDSDFFKNSLKNNDKVDHRIKQMQEQVAKLTHTKMRFLEARIDEIVALQLEPRRDLTRIKVVIDMDMFYAAVEMRDNPKLRHVPLAVGSIGMISTTNYEARKFGVRSAMPGFIGKKLCPDLVFTPVRMEKYSVIAQEIRQIFAVYDPNFTAFSLDEAALDLTDYIR-------------------------KHWKRYVSQFSAKDWDPDSWILDSDSIDEGSNKIPEPLTMKIASAIVSEIRQRIYDETQLTASAGIAVNTMLAKICSNINKPNGQSALEGTKQAVLKFIRELPVRKVGGIGKVMEK-ILAALNMTTMQEVFDRRAILFHVFKERTAIWLLSTSLGIQ-------------EHQGESERKSYSRETTFRAVSDFDKLKQICATICEHLAQDLAEDKMAARNITLKLKCADFSVRTRSVTLITSIQSCKRLLQVALDLLKREMPISLRLLGVRAASLIPADQQEETNQMQKRQLTIQDCKGT-----------IERDLDPIKEFDAEREVSAI--SNDTKESLYNEAYAPCPICTQIIKTSNLIAVNRHIDECI 586          
BLAST of NO02G02240 vs. NCBI_GenBank
Match: XP_006303846.1 (DNA polymerase kappa isoform X2 [Capsella rubella] >EOA36744.1 hypothetical protein CARUB_v10012571mg [Capsella rubella])

HSP 1 Score: 283.1 bits (723), Expect = 2.700e-72
Identity = 186/529 (35.16%), Postives = 277/529 (52.36%), Query Frame = 0
Query:  140 ATGNTSDTRHFY--TFLNDKAGMDENKRSKEEVEKIVHEASKNSKFFLAQQRNDVKIQERIRGIKSKLRTLSEPLRRALESEADKRLIAAEKSRRSYTQVCVVIDLDAFFTSVEERDEPSLKAVPFAVGG-GVICTANYEARKYGVRSAMPEFIARKLCPQLLVRQTRFETYSHVAEQTRMIFKEYDPHFRAGSLDEAYLDLTACVQGLVRER---GGEVPFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYWSVAEAVVAEIRRRICEVTGVTASAGIATSFCLAKIASNERKPDGQYRVGN----VGGFLRHLPVRKVSGIGRITERCLVAGLEIGTCWELWSKRALLYHVYTHQTAHWLVCKSVGLDGXXXXXXXXXXXXXXXXXXXXXGISRERTFAALSRKDDLLEKLRMICDSLAADMAREGLKAKSITLKLKNSDFAITTRAKSCAFYVSTSQELYQHSLSLLLPQLPITLRLMGVRASHFQPKPQAPPKGQGCLEGYVV 659
            +T N+S     Y   F N KAGM+     KE+V++IV+E SK SK+F  ++R D  ++++I  ++ +   LS  +    +   D+R++  E S R  +++ + +D+DAF+ +VE   +PSLK  P AVGG  +I TANYEARK+GVR+AMP FIARKLCP L+     F  Y+H ++ TR +F  YDPHF AGSLDEAYLD+T     + RER   GGE                                                             +  E+R  +   TG+T SAG+A +  LAK+ S+  KP+GQ+ + N    V  F+  LPVRK+ GIG++TE  L   L I TC E+  K +LLY +++  +A + +   +GL G                      IS ERTF+A   +  L  KL  I + L+ DM +EGL A+++TLKLK + F I +RA S   Y  +S ++ +H+  LL  +LP+++RL+G+R S F  + +     QG +  ++V
Sbjct:    8 STNNSSRPWESYNTVFTNAKAGME--GVDKEKVQRIVYEMSKGSKYFQNEERKDALMKQKIEHMRDRCAKLSSSVLSTYQKVVDRRILELEAS-RDLSRIWLHVDMDAFYAAVETLSDPSLKGKPMAVGGLSMISTANYEARKFGVRAAMPGFIARKLCPDLIFVPVDFTKYTHYSDLTRKVFGSYDPHFIAGSLDEAYLDITE----VCRERGLSGGE-------------------------------------------------------------IAEELRSSVYSETGLTCSAGVAANRLLAKVCSDINKPNGQFVLQNDRSTVMTFISSLPVRKIGGIGKVTEHILNDALGIKTCEEMVQKGSLLYALFSQSSADFFLSVGLGLGG-----------TDTPQVRSRKSISSERTFSATGDERLLYSKLAEIAEMLSQDMKKEGLTARTLTLKLKTASFEIRSRAVSLQRYTCSSDDILKHATKLLKAELPVSVRLIGLRMSQFMEEVRNSDPSQGTITKFIV 457          
BLAST of NO02G02240 vs. NCBI_GenBank
Match: XP_023632986.1 (DNA polymerase kappa isoform X1 [Capsella rubella])

HSP 1 Score: 283.1 bits (723), Expect = 2.700e-72
Identity = 186/529 (35.16%), Postives = 277/529 (52.36%), Query Frame = 0
Query:  140 ATGNTSDTRHFY--TFLNDKAGMDENKRSKEEVEKIVHEASKNSKFFLAQQRNDVKIQERIRGIKSKLRTLSEPLRRALESEADKRLIAAEKSRRSYTQVCVVIDLDAFFTSVEERDEPSLKAVPFAVGG-GVICTANYEARKYGVRSAMPEFIARKLCPQLLVRQTRFETYSHVAEQTRMIFKEYDPHFRAGSLDEAYLDLTACVQGLVRER---GGEVPFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYWSVAEAVVAEIRRRICEVTGVTASAGIATSFCLAKIASNERKPDGQYRVGN----VGGFLRHLPVRKVSGIGRITERCLVAGLEIGTCWELWSKRALLYHVYTHQTAHWLVCKSVGLDGXXXXXXXXXXXXXXXXXXXXXGISRERTFAALSRKDDLLEKLRMICDSLAADMAREGLKAKSITLKLKNSDFAITTRAKSCAFYVSTSQELYQHSLSLLLPQLPITLRLMGVRASHFQPKPQAPPKGQGCLEGYVV 659
            +T N+S     Y   F N KAGM+     KE+V++IV+E SK SK+F  ++R D  ++++I  ++ +   LS  +    +   D+R++  E S R  +++ + +D+DAF+ +VE   +PSLK  P AVGG  +I TANYEARK+GVR+AMP FIARKLCP L+     F  Y+H ++ TR +F  YDPHF AGSLDEAYLD+T     + RER   GGE                                                             +  E+R  +   TG+T SAG+A +  LAK+ S+  KP+GQ+ + N    V  F+  LPVRK+ GIG++TE  L   L I TC E+  K +LLY +++  +A + +   +GL G                      IS ERTF+A   +  L  KL  I + L+ DM +EGL A+++TLKLK + F I +RA S   Y  +S ++ +H+  LL  +LP+++RL+G+R S F  + +     QG +  ++V
Sbjct:    8 STNNSSRPWESYNTVFTNAKAGME--GVDKEKVQRIVYEMSKGSKYFQNEERKDALMKQKIEHMRDRCAKLSSSVLSTYQKVVDRRILELEAS-RDLSRIWLHVDMDAFYAAVETLSDPSLKGKPMAVGGLSMISTANYEARKFGVRAAMPGFIARKLCPDLIFVPVDFTKYTHYSDLTRKVFGSYDPHFIAGSLDEAYLDITE----VCRERGLSGGE-------------------------------------------------------------IAEELRSSVYSETGLTCSAGVAANRLLAKVCSDINKPNGQFVLQNDRSTVMTFISSLPVRKIGGIGKVTEHILNDALGIKTCEEMVQKGSLLYALFSQSSADFFLSVGLGLGG-----------TDTPQVRSRKSISSERTFSATGDERLLYSKLAEIAEMLSQDMKKEGLTARTLTLKLKTASFEIRSRAVSLQRYTCSSDDILKHATKLLKAELPVSVRLIGLRMSQFMEEVRNSDPSQGTITKFIV 457          
BLAST of NO02G02240 vs. NCBI_GenBank
Match: XP_006422820.1 (DNA polymerase kappa [Citrus clementina] >ESR36060.1 hypothetical protein CICLE_v10027948mg [Citrus clementina])

HSP 1 Score: 280.4 bits (716), Expect = 1.800e-71
Identity = 179/500 (35.80%), Postives = 271/500 (54.20%), Query Frame = 0
Query:  153 FLNDKAGMDENKRSKEEVEKIVHEASKNSKFFLAQQRNDVKIQERIRGIKSKLRTLSEPLRRALESEADKRLIAAEKSRRSYTQVCVVIDLDAFFTSVEERDEPSLKAVPFAVGG-GVICTANYEARKYGVRSAMPEFIARKLCPQLLVRQTRFETYSHVAEQTRMIFKEYDPHFRAGSLDEAYLDLTACVQGLVRERGGEVPFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYWSVAEAVVAEIRRRICEVTGVTASAGIATSFCLAKIASNERKPDGQYRVGN----VGGFLRHLPVRKVSGIGRITERCLVAGLEIGTCWELWSKRALLYHVYTHQTAHWLVCKSVGLDGXXXXXXXXXXXXXXXXXXXXXGISRERTFAALSRKDDLLEKLRMICDSLAADMAREGLKAKSITLKLKNSDFAITTRAKSCAFYVSTSQELYQHSLSLLLPQLPITLRLMGVRASHF-QPKPQAP 647
            + N KAGMD     KE+V+K+V+E SK SK+F  ++R +  IQ++I  ++++   L+ P+    +  ADKR++  E + R  ++  + +D+DAF+ +VE    PSLK  P AVG   +ICTANYEAR++GVR+AMP FIARKLCP+L+   T F  Y++ ++ TR +F +YDP+F A SLDEAYLD+T     + RERG                                                               +  E+R  + E  G+T SAG+A +  LAK+ S+  KP+GQ+ + N    V  F+  LP+RK+ GIG++TE  L     I TC E+  K +LL  V++H TA + +   +GL                        IS ERTF+A   K  L  KL  I + L+ADM +EGL+ +++TLKLK + F + TRA +   Y+S+S+++ +H+  LL  +LP++LRL+G+R + F + K +AP
Sbjct:   25 YTNAKAGMD--GVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQKVADKRILELE-ATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFHKYDPNFMAASLDEAYLDITE----VCRERG----------------------------------------------------------ISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS-----------TNTPQARFRKSISSERTFSATEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKVRAP 448          
BLAST of NO02G02240 vs. NCBI_GenBank
Match: XP_016691604.1 (PREDICTED: DNA polymerase kappa isoform X1 [Gossypium hirsutum])

HSP 1 Score: 280.4 bits (716), Expect = 1.800e-71
Identity = 177/493 (35.90%), Postives = 267/493 (54.16%), Query Frame = 0
Query:  153 FLNDKAGMDENKRSKEEVEKIVHEASKNSKFFLAQQRNDVKIQERIRGIKSKLRTLSEPLRRALESEADKRLIAAEKSRRSYTQVCVVIDLDAFFTSVEERDEPSLKAVPFAVGG-GVICTANYEARKYGVRSAMPEFIARKLCPQLLVRQTRFETYSHVAEQTRMIFKEYDPHFRAGSLDEAYLDLTACVQGLVRERGGEVPFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYWSVAEAVVA-EIRRRICEVTGVTASAGIATSFCLAKIASNERKPDGQYRVGN----VGGFLRHLPVRKVSGIGRITERCLVAGLEIGTCWELWSKRALLYHVYTHQTAHWLVCKSVGLDGXXXXXXXXXXXXXXXXXXXXXGISRERTFAALSRKDDLLEKLRMICDSLAADMAREGLKAKSITLKLKNSDFAITTRAKSCAFYVSTSQELYQHSLSLLLPQLPITLRLMGVRASHF 640
            + N KAGMD     KE+V+++V+E SK SK+F  ++R +  I+++I  ++++   LS       +  ADKR++  E S R  +++ + +D+DAF+ +VE    PSLK  P AVG   +I TANYEARK+GVR+AMP FIARKLCP L+   T F+ Y++ ++ TR +F +YDP+F A SLDEAYLD+T   +G                                                                S+  A +A E+R R+ E TG+T SAG+A +  LAK+ S+  KP+GQ+ + N    V  F+  LP+RK+ GIG++TE  L     I TC E+  K + L  +++H +A + +   +GL G                      IS ERTF+A      L +KL  I + L+ADM +EGL  +++TLKLK + F + TRA +   Y+S+S ++ +H+ +LL  +LPI+LRL+G+R SHF
Sbjct:   21 YTNAKAGMD--GVDKEKVQRVVYEMSKGSKYFENEERKEAFIRQKIEHMRARAAKLSAADLSHYQKVADKRILELE-STRDLSRIWLHVDMDAFYAAVETLSNPSLKGKPMAVGSMSMISTANYEARKFGVRAAMPGFIARKLCPDLIFVPTDFKKYTYYSDSTRKVFWDYDPNFMAASLDEAYLDITKVCEGR---------------------------------------------------------------SITGAEIAEELRSRVHEETGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDHMAVMTFISSLPIRKIGGIGKVTENILKGVFGISTCEEMLQKGSFLCALFSHSSADFFLSVGLGLGG-----------TDTPEARFRKSISSERTFSATEDAALLYQKLADIAEMLSADMQKEGLSGRTLTLKLKTASFEVRTRAVTLQKYISSSDDILKHASNLLKAELPISLRLIGLRVSHF 436          
BLAST of NO02G02240 vs. NCBI_GenBank
Match: EFH67806.1 (predicted protein [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 279.3 bits (713), Expect = 3.900e-71
Identity = 187/529 (35.35%), Postives = 275/529 (51.98%), Query Frame = 0
Query:  140 ATGNTSDTRHFYT--FLNDKAGMDENKRSKEEVEKIVHEASKNSKFFLAQQRNDVKIQERIRGIKSKLRTLSEPLRRALESEADKRLIAAEKSRRSYTQVCVVIDLDAFFTSVEERDEPSLKAVPFAVGG-GVICTANYEARKYGVRSAMPEFIARKLCPQLLVRQTRFETYSHVAEQTRMIFKEYDPHFRAGSLDEAYLDLTACVQGLVRER---GGEVPFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYWSVAEAVVAEIRRRICEVTGVTASAGIATSFCLAKIASNERKPDGQYRVGN----VGGFLRHLPVRKVSGIGRITERCLVAGLEIGTCWELWSKRALLYHVYTHQTAHWLVCKSVGLDGXXXXXXXXXXXXXXXXXXXXXGISRERTFAALSRKDDLLEKLRMICDSLAADMAREGLKAKSITLKLKNSDFAITTRAKSCAFYVSTSQELYQHSLSLLLPQLPITLRLMGVRASHFQPKPQAPPKGQGCLEGYVV 659
            +T N+S     Y   F N KAGM+     KE+V++IV+E SK SKFF  ++R +  ++++I  ++ +   LS           DKR++  E + R  +++ + +D+DAF+ +VE   +PSLK  P AVGG  +I TANYEARK+GVR+AMP FIARKLCP L+     F  Y+H ++ TR +F+ YDPHF AGSLDEAYLD+T     + RER   GGE                                                             +  E+R  +   TG+T SAG+A +  LAK+ S+  KP+GQ+ + N    V  F+  LPVRK+ GIG++TE  L   L I TC E+  K  LLY +++  +A + +   +GL G                      IS ERTFAA   +  L  KL  I + L+ DM +EGL A+++TLKLK + F I +RA S   Y  +S ++ +H+  LL  +LP+++RL+G+R S F  + +     QG +  ++V
Sbjct:    8 STNNSSRPWESYNTFFTNAKAGME--GVDKEKVQRIVYEMSKGSKFFQNEERKEALMKQKIEHMRDRCAKLSSSDLSNYHKVVDKRILELE-ATRDLSRIWLHVDMDAFYAAVETLSDPSLKGKPMAVGGLSMISTANYEARKFGVRAAMPGFIARKLCPDLIFVPVDFTKYTHYSDLTRKVFRNYDPHFIAGSLDEAYLDITE----VCRERGLSGGE-------------------------------------------------------------IAEELRSSVYSETGLTCSAGVAANRLLAKVCSDINKPNGQFVLQNDRSTVMTFVSSLPVRKIGGIGKVTEHILKDALGIKTCEEMVQKGPLLYALFSQSSADFFLSVGLGLGG-----------TDTPQVRSRKSISSERTFAATGDERLLYSKLAEIAEMLSHDMKKEGLTARTLTLKLKTASFEIRSRAVSLQRYTCSSDDILKHATKLLKAELPVSVRLIGLRMSQFVGEIRNSDPSQGTITKFIV 457          
BLAST of NO02G02240 vs. NCBI_GenBank
Match: XP_020866704.1 (LOW QUALITY PROTEIN: DNA polymerase kappa [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 279.3 bits (713), Expect = 3.900e-71
Identity = 187/529 (35.35%), Postives = 275/529 (51.98%), Query Frame = 0
Query:  140 ATGNTSDTRHFYT--FLNDKAGMDENKRSKEEVEKIVHEASKNSKFFLAQQRNDVKIQERIRGIKSKLRTLSEPLRRALESEADKRLIAAEKSRRSYTQVCVVIDLDAFFTSVEERDEPSLKAVPFAVGG-GVICTANYEARKYGVRSAMPEFIARKLCPQLLVRQTRFETYSHVAEQTRMIFKEYDPHFRAGSLDEAYLDLTACVQGLVRER---GGEVPFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYWSVAEAVVAEIRRRICEVTGVTASAGIATSFCLAKIASNERKPDGQYRVGN----VGGFLRHLPVRKVSGIGRITERCLVAGLEIGTCWELWSKRALLYHVYTHQTAHWLVCKSVGLDGXXXXXXXXXXXXXXXXXXXXXGISRERTFAALSRKDDLLEKLRMICDSLAADMAREGLKAKSITLKLKNSDFAITTRAKSCAFYVSTSQELYQHSLSLLLPQLPITLRLMGVRASHFQPKPQAPPKGQGCLEGYVV 659
            +T N+S     Y   F N KAGM+     KE+V++IV+E SK SKFF  ++R +  ++++I  ++ +   LS           DKR++  E + R  +++ + +D+DAF+ +VE   +PSLK  P AVGG  +I TANYEARK+GVR+AMP FIARKLCP L+     F  Y+H ++ TR +F+ YDPHF AGSLDEAYLD+T     + RER   GGE                                                             +  E+R  +   TG+T SAG+A +  LAK+ S+  KP+GQ+ + N    V  F+  LPVRK+ GIG++TE  L   L I TC E+  K  LLY +++  +A + +   +GL G                      IS ERTFAA   +  L  KL  I + L+ DM +EGL A+++TLKLK + F I +RA S   Y  +S ++ +H+  LL  +LP+++RL+G+R S F  + +     QG +  ++V
Sbjct:    8 STNNSSRPWESYNTFFTNAKAGME--GVDKEKVQRIVYEMSKGSKFFQNEERKEALMKQKIEHMRDRCAKLSSSDLSNYHKVVDKRILELE-ATRDLSRIWLHVDMDAFYAAVETLSDPSLKGKPMAVGGLSMISTANYEARKFGVRAAMPGFIARKLCPDLIFVPVDFTKYTHYSDLTRKVFRNYDPHFIAGSLDEAYLDITE----VCRERGLSGGE-------------------------------------------------------------IAEELRSSVYSETGLTCSAGVAANRLLAKVCSDINKPNGQFVLQNDRSTVMTFVSSLPVRKIGGIGKVTEHILKDALGIKTCEEMVQKGPLLYALFSQSSADFFLSVGLGLGG-----------TDTPQVRSRKSISSERTFAATGDERLLYSKLAEIAEMLSHDMKKEGLTARTLTLKLKTASFEIRSRAVSLQRYTCSSDDILKHATKLLKAELPVSVRLIGLRMSQFVGEIRNSDPSQGTITKFIV 457          
BLAST of NO02G02240 vs. NCBI_GenBank
Match: KDO57896.1 (hypothetical protein CISIN_1g005785mg [Citrus sinensis])

HSP 1 Score: 278.1 bits (710), Expect = 8.800e-71
Identity = 178/500 (35.60%), Postives = 270/500 (54.00%), Query Frame = 0
Query:  153 FLNDKAGMDENKRSKEEVEKIVHEASKNSKFFLAQQRNDVKIQERIRGIKSKLRTLSEPLRRALESEADKRLIAAEKSRRSYTQVCVVIDLDAFFTSVEERDEPSLKAVPFAVGG-GVICTANYEARKYGVRSAMPEFIARKLCPQLLVRQTRFETYSHVAEQTRMIFKEYDPHFRAGSLDEAYLDLTACVQGLVRERGGEVPFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYWSVAEAVVAEIRRRICEVTGVTASAGIATSFCLAKIASNERKPDGQYRVGN----VGGFLRHLPVRKVSGIGRITERCLVAGLEIGTCWELWSKRALLYHVYTHQTAHWLVCKSVGLDGXXXXXXXXXXXXXXXXXXXXXGISRERTFAALSRKDDLLEKLRMICDSLAADMAREGLKAKSITLKLKNSDFAITTRAKSCAFYVSTSQELYQHSLSLLLPQLPITLRLMGVRASHF-QPKPQAP 647
            + N KAGMD     KE+V+K+V+E SK SK+F  ++R +  IQ++I  ++++   L+ P+    +  ADKR++  E + R  ++  + +D+DAF+ +VE    PSLK  P AVG   +ICTANYEAR++GVR+AMP FIARKLCP+L+   T F  Y++ ++ TR +F +YDP+F A SLDEAYLD+T     + RERG                                                               +  E+R  + E  G+T SAG+A +  LAK+ S+  KP+GQ+ + N    V  F+  LP+RK+ GIG++TE  L     I TC E+  K +LL  V++H TA + +   +GL                        IS ERTF+    K  L  KL  I + L+ADM +EGL+ +++TLKLK + F + TRA +   Y+S+S+++ +H+  LL  +LP++LRL+G+R + F + K +AP
Sbjct:   25 YTNAKAGMD--GVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQKVADKRILELE-ATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITE----VCRERG----------------------------------------------------------ISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS-----------TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKVRAP 448          
The following BLAST results are available for this feature:
BLAST of NO02G02240 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM30435.16.200e-20263.43dna polymerase kappa [Nannochloropsis gaditana][more]
CCA14130.11.900e-7333.77DNA polymerase kappa putative [Albugo laibachii Nc... [more]
CCI48937.11.600e-7233.84unnamed protein product [Albugo candida] >CCI48944... [more]
XP_006303846.12.700e-7235.16DNA polymerase kappa isoform X2 [Capsella rubella]... [more]
XP_023632986.12.700e-7235.16DNA polymerase kappa isoform X1 [Capsella rubella][more]
XP_006422820.11.800e-7135.80DNA polymerase kappa [Citrus clementina] >ESR36060... [more]
XP_016691604.11.800e-7135.90PREDICTED: DNA polymerase kappa isoform X1 [Gossyp... [more]
EFH67806.13.900e-7135.35predicted protein [Arabidopsis lyrata subsp. lyrat... [more]
XP_020866704.13.900e-7135.35LOW QUALITY PROTEIN: DNA polymerase kappa [Arabido... [more]
KDO57896.18.800e-7135.60hypothetical protein CISIN_1g005785mg [Citrus sine... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR002ngnoR002Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006862NSK006862Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G02240.1NO02G02240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100321g4gene229Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G02240.1NO02G02240.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G02240 ID=NO02G02240|Name=NO02G02240|organism=Nannochloropsis oceanica|type=gene|length=2448bp
ATGCAGCAGCAGCAGGAGGAGGAGCAGCAGCGTTTTGGCCAGGCCCACGA
CCATGACAACGGAGTGGCGTTTAAAGGAAGCGATGACGAGGAGGAAGAGG
AGGATGATCTGTTCTTCACGCAAACACAAGAGGATGGGGACGAGGAGTGG
GCACCGGAGTCAGGGGCGGAAGCTCCTTTACTGCCTCCCTACGTGCCAGA
GCTCGGTTTGGAGGAGATGTCGTCTACGCAGCGGCACCGGTGCAATTTTC
ACCTTCACCACCGCCAGCAGCAGCAGCATCATCACCACCACCAGCCGCAG
CAGCGGCCGGCCCCGCTTGCACCCCTTCCGGCTTCGAATGCGACCGCCGC
TGCTCCTGCCTTTCCAGTTTTCGGGCATGAAGACTCCTCCGCCTGTGTCA
CTGGCCCCACTGATCCTGCAACAGGCAATACTTCCGACACACGACACTTC
TATACCTTCCTCAACGACAAGGCAGGCATGGATGAAAACAAACGTTCGAA
AGAAGAGGTGGAAAAAATTGTGCACGAAGCTTCAAAAAATAGTAAGTTTT
TCCTGGCACAGCAACGGAACGACGTCAAGATCCAAGAGCGCATACGAGGG
ATAAAATCAAAGCTCCGCACCTTATCTGAGCCTCTCCGTCGCGCGCTCGA
ATCGGAAGCAGACAAGCGTCTTATCGCCGCTGAAAAATCACGTCGTTCCT
ATACACAAGTGTGCGTTGTAATTGACCTTGACGCCTTTTTTACGTCCGTG
GAAGAACGCGACGAGCCTTCGCTTAAAGCCGTGCCATTTGCTGTTGGAGG
GGGGGTGATTTGCACGGCTAATTATGAAGCGCGGAAGTATGGGGTGCGCA
GTGCGATGCCTGAATTTATTGCGCGAAAATTGTGTCCACAGCTGCTTGTG
CGGCAGACGAGGTTTGAAACTTACTCCCACGTTGCAGAGCAGACGCGAAT
GATTTTCAAAGAATACGATCCGCATTTTCGGGCAGGGAGCTTGGATGAGG
CGTACCTGGACTTGACGGCTTGTGTGCAGGGATTGGTGAGGGAGAGAGGG
GGGGAGGTTCCTTTCGGTGGAGGAAGTGGGGGAGGAGGGATATCTTTATT
TGAGCGGCCGGAAGCTGCGATGGTGCTGAAGGCGGATGGAGAGGAAGAGG
AAGAGGATGACGACGAGGAGAAACAAAGTGGAGAAGAGCATGACAAAACA
GAGAAGAGACATGCTTATTATTGGTCAGTTGCGGAGGCAGTTGTGGCAGA
GATTCGTCGACGTATTTGTGAGGTTACAGGTGTGACTGCTAGTGCGGGCA
TTGCCACCAGTTTTTGTCTCGCCAAGATCGCGTCGAATGAGCGGAAGCCC
GATGGTCAGTATAGGGTGGGGAATGTCGGAGGGTTCTTGAGACACCTCCC
CGTGAGGAAGGTGAGTGGAATTGGAAGGATAACCGAGAGGTGCTTGGTGG
CTGGGTTGGAGATAGGGACGTGTTGGGAGTTGTGGTCGAAGCGAGCGTTG
CTTTATCACGTATATACGCATCAGACAGCACATTGGTTGGTGTGCAAGAG
CGTGGGGCTTGATGGTGGGGGACCAGATGATGGTAATAGTGAAGATGGAG
GGGGGGGCGGGGGAGGAGGGGGAAGGAAGGGGATTAGTCGTGAGAGGACC
TTTGCGGCATTGAGTCGGAAAGATGATTTATTGGAGAAACTGCGAATGAT
TTGCGACTCATTGGCGGCAGACATGGCAAGGGAGGGCCTCAAGGCAAAGA
GCATCACGCTCAAATTGAAGAATAGTGATTTTGCGATAACGACCCGAGCC
AAATCCTGTGCGTTTTACGTGTCGACGTCTCAAGAGCTATATCAACATTC
CCTCTCCTTACTCCTTCCCCAGCTTCCAATCACCCTCCGACTCATGGGCG
TCCGTGCCTCTCATTTTCAACCCAAGCCTCAAGCGCCTCCGAAAGGACAG
GGGTGCTTGGAAGGGTATGTCGTCACCAGCGGGCCGAACACCGCCGTCGC
CGCAGGCGCAGCATCAGGAGAGGCGGCAGCAGGCGATCTTTCTCCCTTCG
TCTCCTCCTCCTCTTACTCCTCTCCGTCCTCCTTGCCGGCGGCTTCACAA
TCCGAGGCACCCATCGTCCCACCTGCTTACTCCTGTCCTGTGTGTAGCCG
GTGTCTATCGGTGGGTTTGCACGACTTCAACCAGCACGTGGACGACTGCT
TGCGGGCATCCGACCCTCATTTTCATCGGAGACAGAAAGAGCAGGAAGAG
AAGCAGGAAAAGGGAAAAGAGAGGCGGAAGCTTTCTTCCGCGCCCCCGCA
ATCCACAGTGGCTTACAAGAAGGGGAAGCGGAATGGGGCCGGGGGAGGAA
GGGAGGGAGGAGGAAAGAAGAGGGCATCACAGCCCGTAGCGAAACCACTG
GAACATTTCTTTCGTTCTACAGGGAATGCAAATGGCATGAAAAACTAA
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protein sequence of NO02G02240.1

>NO02G02240.1-protein ID=NO02G02240.1-protein|Name=NO02G02240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=816bp
MQQQQEEEQQRFGQAHDHDNGVAFKGSDDEEEEEDDLFFTQTQEDGDEEW
APESGAEAPLLPPYVPELGLEEMSSTQRHRCNFHLHHRQQQQHHHHHQPQ
QRPAPLAPLPASNATAAAPAFPVFGHEDSSACVTGPTDPATGNTSDTRHF
YTFLNDKAGMDENKRSKEEVEKIVHEASKNSKFFLAQQRNDVKIQERIRG
IKSKLRTLSEPLRRALESEADKRLIAAEKSRRSYTQVCVVIDLDAFFTSV
EERDEPSLKAVPFAVGGGVICTANYEARKYGVRSAMPEFIARKLCPQLLV
RQTRFETYSHVAEQTRMIFKEYDPHFRAGSLDEAYLDLTACVQGLVRERG
GEVPFGGGSGGGGISLFERPEAAMVLKADGEEEEEDDDEEKQSGEEHDKT
EKRHAYYWSVAEAVVAEIRRRICEVTGVTASAGIATSFCLAKIASNERKP
DGQYRVGNVGGFLRHLPVRKVSGIGRITERCLVAGLEIGTCWELWSKRAL
LYHVYTHQTAHWLVCKSVGLDGGGPDDGNSEDGGGGGGGGGRKGISRERT
FAALSRKDDLLEKLRMICDSLAADMAREGLKAKSITLKLKNSDFAITTRA
KSCAFYVSTSQELYQHSLSLLLPQLPITLRLMGVRASHFQPKPQAPPKGQ
GCLEGYVVTSGPNTAVAAGAASGEAAAGDLSPFVSSSSYSSPSSLPAASQ
SEAPIVPPAYSCPVCSRCLSVGLHDFNQHVDDCLRASDPHFHRRQKEQEE
KQEKGKERRKLSSAPPQSTVAYKKGKRNGAGGGREGGGKKRASQPVAKPL
EHFFRSTGNANGMKN*
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Synonyms
Publications