NO02G02190, NO02G02190 (gene) Nannochloropsis oceanica

Overview
NameNO02G02190
Unique NameNO02G02190
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length914
Alignment locationchr2:615426..616339 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:615426..616339 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO02G02190 vs. NCBI_GenBank
Match: EWM30458.1 (hypothetical protein Naga_100100g2 [Nannochloropsis gaditana])

HSP 1 Score: 146.7 bits (369), Expect = 3.700e-32
Identity = 67/86 (77.91%), Postives = 77/86 (89.53%), Query Frame = 0 
Query:   14 MTMGAGLFGASLGIFVKMASNSMRKIPLRREPWDYPLFMIVGTWVGYKYVSLEASLTERVNEKRAALEKPPVELGGIMTTLKKAAE 100
            MT+G GL GAS GIFVK+ASNSMRKIPLRREPWDYP+FM+VG WVGYKYV+LE SL ERVNEKRA L+K PV LGG++TT+K+AAE
Sbjct:    1 MTLGTGLVGASFGIFVKLASNSMRKIPLRREPWDYPIFMLVGAWVGYKYVALEESLRERVNEKRAILDKEPVHLGGVLTTIKEAAE 86
The following BLAST results are available for this feature:
BLAST of NO02G02190 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30458.13.700e-3277.91hypothetical protein Naga_100100g2 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR002ngnoR002Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G02190.1NO02G02190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574203gene_805Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100100g2gene225Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G02190.1NO02G02190.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G02190 ID=NO02G02190|Name=NO02G02190|organism=Nannochloropsis oceanica|type=gene|length=914bp
ATGCCCCTGGAAGGCTCAGAAGGCCCCAATGAGgtataatagggaacgag
aaacacaattaaagtcctcgatcaatcgtgatgataccattccaaaaacc
cacagctctgggagcatgcgaagcagcccatgccaacaagcagaacacaa
tcgaaaggcatgcttggtgggattggcggggttttgtcttgttgtcatgg
tagaattcggtcagcaagtgcctcatccatctctttctctttccctccct
tgaccagGCAACCATGACGATGGGGGCGGGCCTTTTCGGGGCCTCCTTGG
GCATCTTCGTCAAGATGGCCAGCAACAGCATGCGCAAGATACCACTTCGA
CGAGgtaaataattggtagttggtggagtgggggcgtgggatcgggtggg
agaaagctacaggagaggagccaagtcaggcaggaaagcgaaggacttct
gggtacgccctagtagccgcacgcgtagccctgcaccagattaaagaaca
ccccctttggtagaaaaagacgagtagcatgtgggctgcaagcggatttc
agagcgagaaagggttggtagaaatggtggacatccctagcccacctgcg
ggtctcatgatgcgactacatgcatgccctcaccttcaagaaacatagca
ttgcgtgattgccaacacccaagaatccagatgactcaccaaaatatatt
ctgctcctcaactcctttccctccccttctttcgaacaaaacagAGCCGT
GGGACTACCCCTTGTTCATGATAGTGGGCACATGGGTGGGGTACAAGTAC
GTCTCGCTGGAAGCGAGTCTGACGGAGCGGGTGAACGAGAAGCGGGCCGC
ATTGGAGAAGCCTCCTGTGGAACTGGGTGGGATTATGACGACGCTCAAGA
AGGCGGCGGAGTAA
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protein sequence of NO02G02190.1

>NO02G02190.1-protein ID=NO02G02190.1-protein|Name=NO02G02190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=100bp
MPLEGSEGPNEATMTMGAGLFGASLGIFVKMASNSMRKIPLRREPWDYPL
FMIVGTWVGYKYVSLEASLTERVNEKRAALEKPPVELGGIMTTLKKAAE*
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Synonyms
Publications