NO02G02150, NO02G02150 (gene) Nannochloropsis oceanica

Overview
NameNO02G02150
Unique NameNO02G02150
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length426
Alignment locationchr2:604597..605022 -

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Properties
Property NameValue
DescriptionMitochondrial import inner membrane translocase subunit tim16
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:604597..605022 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005744TIM23 mitochondrial import inner membrane translocase complex
GO:0016020membrane
GO:0005739mitochondrion
Vocabulary: Biological Process
TermDefinition
GO:0030150protein import into mitochondrial matrix
GO:0016043cellular component organization
GO:0006810transport
Vocabulary: INTERPRO
TermDefinition
IPR005341Tim16
Homology
BLAST of NO02G02150 vs. NCBI_GenBank
Match: XP_002178349.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC50014.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 86.7 bits (213), Expect = 6.500e-14
Identity = 56/131 (42.75%), Postives = 80/131 (61.07%), Query Frame = 0
Query:    3 GPFVRMLVNIAVMSASVFSRAFVAAYHQALQNAKQGGGTAAKAASRTYGGMAPDEALKVLNLQKTDMKNPARLIEQFDKYFMQNEPGKGGSFYLQSKVYRAKECLEKAIEEERGKAAKAKAEADDARKANK 134
            GP  R+L  + V   +V +RA  AAY QALQNAK+ G   A+A S     +   EA ++LNL +++    A + +Q+DKY   N+  KGGSFYLQSKVYRAKE L+   E E+G   + K E++ +  +N+
Sbjct:    4 GPLARILAQVIVPVVAVLARALPAAYAQALQNAKKQGVNPAQATSMLRKTITQQEAFQILNLSESEASAEA-IQKQYDKYMAANDVSKGGSFYLQSKVYRAKELLQ---EFEKGARTEMKKESNQSGSSNQ 130          
BLAST of NO02G02150 vs. NCBI_GenBank
Match: ETI53316.1 (hypothetical protein F443_03713 [Phytophthora parasitica P1569])

HSP 1 Score: 86.3 bits (212), Expect = 8.500e-14
Identity = 58/126 (46.03%), Postives = 75/126 (59.52%), Query Frame = 0
Query:    1 MSGPFVRMLVNIAVMSASVFSRAFVAAYHQALQNAKQG--GGTAAKAASRTYGGMAPDEALKVLNLQKTDMKNPARLIE-QFDKYFMQNEPGKGGSFYLQSKVYRAKECLE-KAIEEERGKAAKAK 123
            MSGP  R++  + VM A + S+AFV AY QA+ NA+ G  G  AAK   R    M   +A ++LN   T     +  I+ QF +YF  N+P KGGSFYLQSK++RAKE LE K  +EE     KAK
Sbjct:    1 MSGPLGRIIAQVVVMGAGIVSKAFVQAYQQAVHNARSGNTGAMAAKTVVRK-NQMPKQQAREILNFPTTGPAPSSEEIQKQFTRYFEANDPAKGGSFYLQSKIFRAKEALERKEPDEEAPPTDKAK 125          
BLAST of NO02G02150 vs. NCBI_GenBank
Match: XP_008900921.1 (hypothetical protein PPTG_08556 [Phytophthora parasitica INRA-310] >ETK93160.1 hypothetical protein L915_03605 [Phytophthora parasitica] >ETL46577.1 hypothetical protein L916_03550 [Phytophthora parasitica] >ETL99714.1 hypothetical protein L917_03468 [Phytophthora parasitica] >ETM52867.1 hypothetical protein L914_03580 [Phytophthora parasitica] >ETN13863.1 hypothetical protein PPTG_08556 [Phytophthora parasitica INRA-310] >ETO81996.1 hypothetical protein F444_03783 [Phytophthora parasitica P1976] >ETP25070.1 hypothetical protein F441_02025 [Phytophthora parasitica CJ01A1] >ETP51116.1 hypothetical protein F442_03688 [Phytophthora parasitica P10297] >KUF77154.1 Mitochondrial import inner membrane translocase subunit tim16 [Phytophthora nicotianae] >KUF88418.1 Mitochondrial import inner membrane translocase subunit tim16 [Phytophthora nicotianae])

HSP 1 Score: 86.3 bits (212), Expect = 8.500e-14
Identity = 58/126 (46.03%), Postives = 75/126 (59.52%), Query Frame = 0
Query:    1 MSGPFVRMLVNIAVMSASVFSRAFVAAYHQALQNAKQG--GGTAAKAASRTYGGMAPDEALKVLNLQKTDMKNPARLIE-QFDKYFMQNEPGKGGSFYLQSKVYRAKECLE-KAIEEERGKAAKAK 123
            MSGP  R++  + VM A + S+AFV AY QA+ NA+ G  G  AAK   R    M   +A ++LN   T     +  I+ QF +YF  N+P KGGSFYLQSK++RAKE LE K  +EE     KAK
Sbjct:    1 MSGPLGRIIAQVVVMGAGIVSKAFVQAYQQAVHNARSGNAGAMAAKTVVRK-NQMPKQQAREILNFPTTGPAPSSEEIQKQFTRYFEANDPAKGGSFYLQSKIFRAKEALERKEPDEEAPPTDKAK 125          
BLAST of NO02G02150 vs. NCBI_GenBank
Match: OWZ09067.1 (putative mitochondrial protein [Phytophthora megakarya])

HSP 1 Score: 86.3 bits (212), Expect = 8.500e-14
Identity = 51/111 (45.95%), Postives = 70/111 (63.06%), Query Frame = 0
Query:    1 MSGPFVRMLVNIAVMSASVFSRAFVAAYHQALQNAKQG--GGTAAKAASRTYGGMAPDEALKVLNLQKTDMKNPARLIE-QFDKYFMQNEPGKGGSFYLQSKVYRAKECLE 109
            MSGP  R++  + VM A + S+AFV AY QA+ NA+ G  G  AAK   R    M+ ++A ++LN   +     +  I+ QF +YF  N+P KGGSFYLQSK++RAKE LE
Sbjct:    1 MSGPLGRIIAQVVVMGAGIVSKAFVQAYQQAVHNARTGNTGAMAAKTVVRK-NQMSKEQAREILNFPTSGAAPSSEEIQKQFTRYFEANDPAKGGSFYLQSKIFRAKEALE 110          
BLAST of NO02G02150 vs. NCBI_GenBank
Match: XP_008607130.1 (hypothetical protein SDRG_03277 [Saprolegnia diclina VS20] >EQC39069.1 hypothetical protein SDRG_03277 [Saprolegnia diclina VS20])

HSP 1 Score: 85.9 bits (211), Expect = 1.100e-13
Identity = 60/132 (45.45%), Postives = 83/132 (62.88%), Query Frame = 0
Query:    1 MSGPFVRMLVNIAVMSASVFSRAFVAAYHQALQNAKQGGGTAAKAASRTY-GGMAPDEALKVLNLQKTDMKNPARLIEQFDKYFMQNE-PGKGGSFYLQSKVYRAKECLEKAIEEERGKAAKAKAEADDARK 131
            MSG   R++ NI V  A V S+AFV AY QA+ NAK G  + A +AS +    M+ ++A++VLNL+     + A + +QFD+YF  N+  G GGS+YLQSK++RAKE L K  E     A +AK EA +A K
Sbjct:    1 MSGQVARLIANIVVAGAGVVSKAFVQAYQQAIVNAKSGKTSVASSASVSLKAKMSKEQAIEVLNLKPN--PSAAEIEKQFDRYFKANDTAGGGGSYYLQSKIFRAKEALLKVDE----PAPEAKPEAAEATK 126          
BLAST of NO02G02150 vs. NCBI_GenBank
Match: CCI48053.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 85.9 bits (211), Expect = 1.100e-13
Identity = 49/115 (42.61%), Postives = 66/115 (57.39%), Query Frame = 0
Query:    1 MSGPFVRMLVNIAVMSASVFSRAFVAAYHQALQNAKQG--GGTAAKAASRTYGGMAPDEALKVLNLQKTDMKNPARLIEQFDKYFMQNEPGKGGSFYLQSKVYRAKECLEKAIEE 114
            M+GP  R++  I VMS  V SRAFV AY QA+ NA  G    TAAK   R    M   +A ++LN   +       + +QF++YF  N+P  GGS+YLQSK++ AKE L   I +
Sbjct:    1 MAGPLGRIVAQIIVMSTGVISRAFVQAYRQAVHNASHGNVASTAAKTTLRKKNEMPLQQAREILNFPSSSTPTAEEVQKQFERYFKANDPSSGGSYYLQSKIHTAKETLSAVINK 115          
BLAST of NO02G02150 vs. NCBI_GenBank
Match: XP_009835101.1 (hypothetical protein H257_10304 [Aphanomyces astaci] >ETV75467.1 hypothetical protein H257_10304 [Aphanomyces astaci])

HSP 1 Score: 85.5 bits (210), Expect = 1.500e-13
Identity = 62/130 (47.69%), Postives = 77/130 (59.23%), Query Frame = 0
Query:    1 MSGPFVRMLVNIAVMSASVFSRAFVAAYHQALQNAKQGGGTAAKAASRTYGGMAPDEALKVLNLQKTDMKNPARLIEQFDKYFMQNEPGK--GGSFYLQSKVYRAKECLEKAIEEER----GKAAKAKAE 125
            MSG   R++ NI V  A V S+AFV AY QA+ NAK  G T   AA      M  D+AL VLNLQ T     A + +QF+++F  NEP K  GGS+YLQSK+YRAKE L K   E      GKA++ K +
Sbjct:    1 MSGQVARLIANIVVAGAGVVSKAFVQAYQQAVVNAKH-GKTVQTAAVTLKNKMQKDQALDVLNLQGT--PTIAEIEKQFERHFKANEPSKDGGGSYYLQSKIYRAKEALLKDHPETTPPAPGKASEEKQQ 127          
BLAST of NO02G02150 vs. NCBI_GenBank
Match: OQR93355.1 (hypothetical protein ACHHYP_02622 [Achlya hypogyna])

HSP 1 Score: 85.1 bits (209), Expect = 1.900e-13
Identity = 55/125 (44.00%), Postives = 79/125 (63.20%), Query Frame = 0
Query:    1 MSGPFVRMLVNIAVMSASVFSRAFVAAYHQALQNAKQGGGTAAKAASRTYGGMAPDEALKVLNLQKTDMKNPARLIEQFDKYFMQNE-PGKGGSFYLQSKVYRAKECLEKAIEEERGKAAKAKAE 125
            MSG   R++ NI V  A V S+AFV AY QA+ NAK G   A+ A+      M+ ++AL+VLNL+     + A + +QF++YF  N+  G GGS+YLQSK++RAKE L KA +  +  A  +KA+
Sbjct:    1 MSGQVARLIANIVVAGAGVVSKAFVQAYQQAIINAKSGKTVASTASVSLKAKMSKEQALEVLNLKAN--PSAAEIEKQFERYFKANDTAGGGGSYYLQSKIFRAKEALLKADDPAQPAADGSKAD 123          
BLAST of NO02G02150 vs. NCBI_GenBank
Match: OQS00424.1 (hypothetical protein THRCLA_21687 [Thraustotheca clavata])

HSP 1 Score: 85.1 bits (209), Expect = 1.900e-13
Identity = 51/108 (47.22%), Postives = 69/108 (63.89%), Query Frame = 0
Query:    1 MSGPFVRMLVNIAVMSASVFSRAFVAAYHQALQNAKQGGGTAAKAASRTYGGMAPDEALKVLNLQKTDMKNPARLIEQFDKYFMQNE-PGKGGSFYLQSKVYRAKECL 108
            MSG   R++ NI V  A V S+AFV AY QA+ NAK G   A+ AA      M+ ++AL+VLNL+       + + +QF+KYF  N+  G GGS+YLQSK++RAKE L
Sbjct:    1 MSGQIARLIANIVVAGAGVVSKAFVQAYQQAIVNAKTGKTVASTAAVSLKPKMSKEQALEVLNLKSN--PTSSEIEKQFEKYFKANDTAGGGGSYYLQSKIFRAKEAL 106          
BLAST of NO02G02150 vs. NCBI_GenBank
Match: CCA26587.1 (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 84.0 bits (206), Expect = 4.200e-13
Identity = 48/117 (41.03%), Postives = 67/117 (57.26%), Query Frame = 0
Query:    1 MSGPFVRMLVNIAVMSASVFSRAFVAAYHQALQNAKQG--GGTAAKAASRTYGGMAPDEALKVLNLQKTDMKNPARLIEQFDKYFMQNEPGKGGSFYLQSKVYRAKECLEKAIEEER 116
            M+GP  R++  I VM   V +RAFV AY QA+ NA  G     AAKA  R    M   +A ++LN       +P  + +QF++Y   N+P  GGS+YLQSK++ AKE L  AI + +
Sbjct:    1 MAGPLGRIVAQIIVMGTGVLTRAFVQAYRQAVHNASNGNIASAAAKAPLRKKNEMPIQQAREILNFPPNSTPSPEEVQKQFERYLKANDPSTGGSYYLQSKIHTAKETLSAAIHKSQ 117          
The following BLAST results are available for this feature:
BLAST of NO02G02150 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_002178349.16.500e-1442.75predicted protein [Phaeodactylum tricornutum CCAP ... [more]
ETI53316.18.500e-1446.03hypothetical protein F443_03713 [Phytophthora para... [more]
XP_008900921.18.500e-1446.03hypothetical protein PPTG_08556 [Phytophthora para... [more]
OWZ09067.18.500e-1445.95putative mitochondrial protein [Phytophthora megak... [more]
XP_008607130.11.100e-1345.45hypothetical protein SDRG_03277 [Saprolegnia dicli... [more]
CCI48053.11.100e-1342.61unnamed protein product [Albugo candida][more]
XP_009835101.11.500e-1347.69hypothetical protein H257_10304 [Aphanomyces astac... [more]
OQR93355.11.900e-1344.00hypothetical protein ACHHYP_02622 [Achlya hypogyna... [more]
OQS00424.11.900e-1347.22hypothetical protein THRCLA_21687 [Thraustotheca c... [more]
CCA26587.14.200e-1341.03conserved hypothetical protein [Albugo laibachii N... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL020nonsL020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR005ngnoR005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR002ngnoR002Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G02150.1NO02G02150.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
TIM16gene197Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G02150.1NO02G02150.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G02150 ID=NO02G02150|Name=NO02G02150|organism=Nannochloropsis oceanica|type=gene|length=426bp
ATGAGCGGTCCTTTTGTACGGATGCTAGTCAACATCGCCGTCATGTCTGC
ATCCGTCTTTTCCCGTGCATTTGTGGCAGCATATCATCAGGCCTTGCAAA
ATGCCAAGCAAGGTGGGGGCACGGCCGCCAAGGCCGCCTCCCGGACTTAT
GGAGGGATGGCCCCGGACGAAGCCCTCAAGGTCCTGAATTTGCAAAAGAC
AGATATGAAAAACCCAGCACGATTGATCGAGCAATTTGACAAGTACTTTA
TGCAGAATGAGCCGGGTAAGGGGGGATCGTTTTATTTGCAGTCAAAGGTG
TATCGGGCGAAAGAGTGCTTGGAGAAGGCGATCGAGGAAGAGCGGGGGAA
GGCCGCCAAGGCCAAAGCGGAAGCAGATGATGCCCGGAAAGCAAACAAAA
GTAAAGTGGGAGGGAAGTCACCATGA
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protein sequence of NO02G02150.1

>NO02G02150.1-protein ID=NO02G02150.1-protein|Name=NO02G02150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=142bp
MSGPFVRMLVNIAVMSASVFSRAFVAAYHQALQNAKQGGGTAAKAASRTY
GGMAPDEALKVLNLQKTDMKNPARLIEQFDKYFMQNEPGKGGSFYLQSKV
YRAKECLEKAIEEERGKAAKAKAEADDARKANKSKVGGKSP*
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Synonyms
Publications