NO02G02080, NO02G02080 (gene) Nannochloropsis oceanica

Overview
NameNO02G02080
Unique NameNO02G02080
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1529
Alignment locationchr2:594751..596279 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:594751..596279 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO02G02080 vs. NCBI_GenBank
Match: EWM30497.1 (hypothetical protein Naga_100013g3 [Nannochloropsis gaditana])

HSP 1 Score: 295.0 bits (754), Expect = 1.900e-76
Identity = 146/187 (78.07%), Postives = 162/187 (86.63%), Query Frame = 0 
Query:   35 VHAAGASSTPQFNLRYGELPQEEDPAERLARQKRWETEYLAYVKRNGAHLCALSWRGYQAEGRGGILSKYEARDTGGQEQEALSEVDRLSGVPSMYVSLARWMESGDAAKAGPDQAERQDLQQILDRVVSYDPEKAFVVVFQAHGVMGADIVTPNISPPEMARRLMKDETDGATQTIDVNGHEVLVD 222
            + A G SSTPQFNLRYGE P +E  AERL RQKRWE EYLAYVKRNGAHLCA+SWRGYQAEGRG IL+KYE +D   QE   LSE+DR+SGVPSMYVSLARWMESG AAK GP QAERQDLQQILDRV+SY+PE+AFVVVFQAHG+MGADIVTPN+SPP+MA +LM  E+D A QTIDV+GHEVLVD
Sbjct:   40 LRATGTSSTPQFNLRYGEPPPQEGEAERLNRQKRWEAEYLAYVKRNGAHLCAMSWRGYQAEGRGAILAKYEDKDM-DQEGRTLSEIDRVSGVPSMYVSLARWMESGQAAKDGPAQAERQDLQQILDRVISYEPERAFVVVFQAHGLMGADIVTPNVSPPDMAEKLMAKESDLAPQTIDVDGHEVLVD 225
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BLAST of NO02G02080 vs. NCBI_GenBank
Match: CBN76085.1 (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 137.1 bits (344), Expect = 6.600e-29
Identity = 75/162 (46.30%), Postives = 104/162 (64.20%), Query Frame = 0 
Query:   60 AERLARQKRWETEYLAYVKRNGAHLCALSWRGYQAEGRGGILSKYEARDTGGQEQEALSEVDRLSGVPSMYVSLARWMESGDAAKAGPDQAERQDLQQILDRVVSYDPEKAFVVVFQAHGVMGADIVTPNISPPEMARRLMKDETDGATQTIDVNGHEVLVD 222
            +E L+    WE EY AY+KR G +LC++SW G+Q  GRG I + Y+      ++++ L+E D+  G+PSMYV L  + ES  A  AG +  E  DL QI+ RV  Y PE+ FVVVFQA GVMGADIV PN+SPPEMA+ ++K  +DG +      G + ++D
Sbjct:  135 SEGLSGVGSWEKEYKAYIKRTGQYLCSMSWEGHQEMGRGAIFANYD----DARKEDKLNETDKFGGIPSMYVPLTEF-ESMKA--AGQEAGEEDDLGQIVRRVKDYRPEREFVVVFQAAGVMGADIVRPNVSPPEMAKHVVK--SDGVSTMPSDTGLDGVID 287
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BLAST of NO02G02080 vs. NCBI_GenBank
Match: CEL99908.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 89.4 bits (220), Expect = 1.600e-14
Identity = 58/166 (34.94%), Postives = 87/166 (52.41%), Query Frame = 0 
Query:   44 PQFNLRYGELPQEEDPAERLARQKRWETEYLAYVKRNGAHLCALSWRGYQAEGRGGILSKYEARDTG----GQEQEALSEVDRLSGVPSMYVSLARWMESGDAAKAGPDQAERQDLQQILDRVVSYDPEKAFVVVFQAHGVMGADIVTPNISPPEMARRLMKDETD 206
            P+F   YG    +  P E   +Q+ WE  Y   V+ +G   CA +W GY+  GRG ++  +E +  G            +  ++   P+MY    ++     + KAG  + E   L Q+  R+ SYDP K FVVVFQ+ G+MGADIV PN++P E A R+ K+E +
Sbjct:   78 PRFQFSYG--GSQLTPME---QQQLWEKSYQENVRASGFSWCAQAWMGYEKMGRGAVMVYHELKQEGXXXXXXXXXXXXKATKMDVAPTMYAPAEKF-----SKKAG-SREEESHLAQVRRRLDSYDPHKEFVVVFQSSGLMGADIVKPNMAPAE-AARIYKEENN 231
The following BLAST results are available for this feature:
BLAST of NO02G02080 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM30497.11.900e-7678.07hypothetical protein Naga_100013g3 [Nannochloropsi... [more]
CBN76085.16.600e-2946.30expressed unknown protein [Ectocarpus siliculosus][more]
CEL99908.11.600e-1434.94unnamed protein product [Vitrella brassicaformis C... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL020nonsL020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR005ngnoR005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR002ngnoR002Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006828NSK006828Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G02080.1NO02G02080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574166gene_794Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100013g3gene203Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G02080.1NO02G02080.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G02080 ID=NO02G02080|Name=NO02G02080|organism=Nannochloropsis oceanica|type=gene|length=1529bp
ACAGGCTCGCCACGCAGGCCTATATCACCATGCTTCGACCGATAGCGCTC
TTGTGCTGCCTCCTCTTCGTCCAAGGCTTCCTCTCGCCCCTGCCCTTGTC
GTCCTCCTCGGCGTCGGCTACTACCGTGCGAGTACACGCTGCCGGCGCTT
CGTCTACCCCTCAGTTCAACCTGCGCTATGGAGAGCTGCCCCAAGAAGAG
GATCCCGCCGAGCGCTTGGCCCGACAAAAGCGGTGGGAGACGGAATACCT
AGCCTACGTCAAGgtcggtagggttgtggagatgaaggaggagaatgggc
gggagggaggggtgggacgggcgggaggaatagatcattcgcgtctttgg
aacacagtaggacaggaagggtagaagagagggaattaatatgacactag
ggaggctaccccatgcctcagcaaaccagtctgtcaccccttccgtgcat
ccataccaacgcttccactgtccccatgaacacaatgccccttacaacag
CGAAACGGCGCTCACCTCTGCGCATTAAGCTGGCGTGGTTACCAAGCCGA
AGGCCGTGGTGGCATATTATCGAAATACGAAGCCAGAGACACGGGGGGGC
AGGAGCAAGAGGCCTTGAGTGAGGTTGATCGCTTGAGTGGTGTGCCGAGC
ATGTACGTGAGCTTAGCCCGATGGATGGAGAGTGGAGACGCTGCGAAAGC
TGGCCCAGATCAGGCAGAAAGACAGGATTTACAGCAGATTTTGGATCGGG
TGGTGAGCTACGACCCAGAGAAGgtacgtcctaccactcttttcctcccc
tcacaccctctcttttccccacctctcattgaactgtacattgatccctc
cctcccacccacccttcctcttcttctccacaccagGCATTTGTGGTTGT
TTTTCAGGCACATGGTGTGATGGGTGCTGATATCGTGACCCCCAATATTA
GCCCGCCGGAAATGGCGCGAAGGTTGATGAAGGATGAGACCGACGGGGCT
ACTCAAACGATTGACGTGAACGGGCATGAGGTGTTGGTGGACAACGAATG
AGGAGCTAGTAGAGTGGCAAGAGGAGTGAGGAATGAAGGAATTGCATGTA
AGGACGACGGGGTAGTGGCTTTTCAAATGATCATAGTCGTGACTGGACAT
ATGAGGTGGTGTTAGACAAGGAGTGAGAAGGATATAGAGGATTGAGTGAA
AGGTAGTGAAATGAAGGTCCGAAATGTTAAGGAATGGTGTCCGAGAGGAG
AGCGGAGGGTTAACAAAGACACACACCCTACTTCCGCGAGGGTTTTGGAA
GCCGGGAAGACATAGAATATAAAAAAACAGCAGCAGAAGCAGCAGCAGCA
GCGAAAACCAGCACATTCCAGCCGACCGACAATGCGTACATCGAGGATGA
CGTCGAAAATAGAAAAACAGAGAACGAAGAGACGCAAGCCAAGATTCTTT
AACAGAGGCCTCCCAATCATCACTATTCTATCTTCCGTGTCTCCTCCCTC
TTCGTCCACCCTCCCCTTCCCTCCCTCCC
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protein sequence of NO02G02080.1

>NO02G02080.1-protein ID=NO02G02080.1-protein|Name=NO02G02080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=224bp
MLRPIALLCCLLFVQGFLSPLPLSSSSASATTVRVHAAGASSTPQFNLRY
GELPQEEDPAERLARQKRWETEYLAYVKRNGAHLCALSWRGYQAEGRGGI
LSKYEARDTGGQEQEALSEVDRLSGVPSMYVSLARWMESGDAAKAGPDQA
ERQDLQQILDRVVSYDPEKAFVVVFQAHGVMGADIVTPNISPPEMARRLM
KDETDGATQTIDVNGHEVLVDNE*
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Synonyms
Publications