NO02G01990, NO02G01990 (gene) Nannochloropsis oceanica
|
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO02G01990 vs. NCBI_GenBank
Match: EWM30452.1 (SANT/Myb domain protein [Nannochloropsis gaditana]) HSP 1 Score: 431.8 bits (1109), Expect = 3.500e-117 Identity = 271/547 (49.54%), Postives = 316/547 (57.77%), Query Frame = 0
Query: 59 ETGRENTGRWTCEEHVLFLKGLEMHGKGWKKIAKLIKTRTVVQIRTHAQKYFQKLAKAKKNGHHGDMLGMEGSHFGGKRVKFTGKRRGLVYNSYLVGAEATSAAISPALQTFMPANLG--MEGERVGLMTDKEEDAAIEKGLYRFLSPVVLDPATRNLDASAPEILPLPPSTPAMGVHHTSSRGXXXXXXXXXXXXXXXXXXDSIVMGDGGSDQDAESSLGEPLPTLARVTPEMYTRCGVPEWFKKGGDIDELLIDAAGLDWRSDSGGDARKVVDQGTSILNANINGSNCATVAPAVVRKGCGSNTNKMNSAAPVLNMTGLAGAGGLSGWKGXXXXXXXXXXXXXXXXNMAL-TANASAGCGQGSWGVRGGAQXXXXXXXXXXXXXXXXXXXXXXXXXXIHVKEEGMELLRVMADRGTV--HGHVHEEDGFAAFDPHHVELKEEHSHHDLLLEELPHDSNHDDALAHIVFSVNGES--DLHSLPRGAXXXXXXXXXXXXXXXXXXXXXXXXXXDIHLHAYDAYLEEEGADGGHGLLLLEDLDGGIEF 599
ETGRENTGRWTCEEHVLFLKGLEMHGKGWKKIAKLIKTRTVVQIRTHAQKYFQKLAKAKKNGHHGDMLGMEG+ FGGKRVKFTGKRRGLVY SYLVGAEATSAAISPALQ++MP + EGE ++DKEEDAAIEKGLYRFLSPVVLD A NLDA+APE+ LPPSTP GVH G D++ + + + DA+SS GEPLP LARVT +MY RC VP WF KGGDI+ELL DAA +DWR DSGGDA K ++G SILNANI S+ A + + + A + + +G K +L TAN G G G Q H G ++ + A GT+ G + + FA+ DPHHVELKEEHSHH+L LEEL +DD AH+ F N E+ D H+ D+H+ YD + ++ DG HG LLL+D DGGIEF
Sbjct: 94 ETGRENTGRWTCEEHVLFLKGLEMHGKGWKKIAKLIKTRTVVQIRTHAQKYFQKLAKAKKNGHHGDMLGMEGTRFGGKRVKFTGKRRGLVYGSYLVGAEATSAAISPALQSYMPGSWAGREEGE---ALSDKEEDAAIEKGLYRFLSPVVLDAAASNLDATAPEV--LPPSTPGTGVHANGVVG----ADGETTEEDGSSGGDNVDVSE--TTDDADSSSGEPLPRLARVTNDMYERCSVPTWFMKGGDIEELLADAAAIDWREDSGGDAVKAEERGASILNANIENSDQAQSHRNGEKVAVPNRVAAVKVAGNISADSSYITSGASQCVKHPPTTNTIDGKRSNMNSGQSLPTANGRNGAASGRCVTGRGQQQKKKQPKTQESGNHGKQHLANK-----HSAPTG-DMFQSKAGAGTIVLQGDI---NCFASLDPHHVELKEEHSHHELRLEELQQSGVNDDTFAHMDFLANDEAPVDHHA-------------GHLHTISTHDDVHSHADHDVHMRNYDVFWKDTVPDGDHG-LLLDDFDGGIEF 606
BLAST of NO02G01990 vs. NCBI_GenBank
Match: CBJ27465.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 135.2 bits (339), Expect = 6.700e-28 Identity = 79/150 (52.67%), Postives = 95/150 (63.33%), Query Frame = 0
Query: 63 ENTGRWTCEEHVLFLKGLEMHGKGWKKIAKLIKTRTVVQIRTHAQKYFQKLAKAKKNGHHGDMLGMEGSHFGGKRVKFTGKRRGLVYNSYLVGAEATSAAISPALQTFMPANLGMEGERVGLMTDKEEDAAIEKGLYRFLSPVVLDPATR 213
+NTGRWT +EH LFL+GLE+HGKGWKKIA LIKTRTVVQIRTHAQKYFQK+AKAK+NG HGD+ H G R K G+RR L G S A++P+LQ ++ A G A+E GLYRFLSP+ + R
Sbjct: 4 KNTGRWTYDEHRLFLRGLELHGKGWKKIASLIKTRTVVQIRTHAQKYFQKIAKAKQNGEHGDVAMDSKGH--GSRRKSRGRRR---MEDLLRG----STAVAPSLQPYV-AGAG----------------AVETGLYRFLSPITIQDLER 127
BLAST of NO02G01990 vs. NCBI_GenBank
Match: GAX28359.1 (protein MYSM1 [Fistulifera solaris]) HSP 1 Score: 130.6 bits (327), Expect = 1.700e-26 Identity = 103/315 (32.70%), Postives = 142/315 (45.08%), Query Frame = 0
Query: 63 ENTGRWTCEEHVLFLKGLEMHGKGWKKIAKLIKTRTVVQIRTHAQKYFQKLAKAKKNGHHGDMLGMEGSHFGG-----------------KRVKFTGKRRGLVYN-----------SYL-----VGAEATSAAISPALQTFMPANLGMEGERVGLMTDKE-EDAAIEKGLYRFLSPVVLDPATRNLDASAPEILPLPPSTPAMGVHHTSSRGXXXXXXXXXXXXXXXXXXDSIVMGDGGSDQDAESSLGEPLPTLARVTPEMYTRCGVPEWFKKGGDIDELLIDAAGLDWRSDSGGDARKVVDQGTSILNANING 344
ENTGRWT EEH LFL+GLE HGKGWKKIA LIK+RTVVQIRTHAQKYFQKLAKA++NG GD + MEG GG +R TG +R ++ + ++L G I+PAL F+ + L+TD +E L+RFL+PV + A+ +++ A + P + P+ H +S GS L + P P W+ KG D+D LL + LDW +D+G Q + +++ +G
Sbjct: 97 ENTGRWTAEEHRLFLQGLEQHGKGWKKIASLIKSRTVVQIRTHAQKYFQKLAKARQNGEEGD-ITMEGR--GGNASITSNTTATAAMTNKRRRHITGTKRKVIQSIVASAQRQAKKAHLTELGDAGKSPVVPGIAPALAYFVTPTPSSASPDIDLLTDDHISGPVLEDSLFRFLTPVPI--ASDHVNDVARQAGANPITLPSTNSHALTS--------------------------VPGSSPTGVQDLS--------IYPSWTDAKDPPSWYAKGADVDALLDVSDTLDWLADTGDLDEDYQPQANDVEDSSFSG 372
BLAST of NO02G01990 vs. NCBI_GenBank
Match: GAX24276.1 (protein MYSM1 [Fistulifera solaris]) HSP 1 Score: 130.2 bits (326), Expect = 2.200e-26 Identity = 108/316 (34.18%), Postives = 145/316 (45.89%), Query Frame = 0
Query: 63 ENTGRWTCEEHVLFLKGLEMHGKGWKKIAKLIKTRTVVQIRTHAQKYFQKLAKAKKNGHHGDMLGMEGSHFGG-----------------KRVKFTGKRRGLVY-------------NSYLVGAEATSAA---ISPALQTFM-PANLGMEGERVGLMTDKE-EDAAIEKGLYRFLSPVVLDPATRNLDASAPEILPLPPSTPAMGVHHTSSRGXXXXXXXXXXXXXXXXXXDSIVMGDGGSDQDAESSLGEPLPTLARVTPEMYTRCGVPEWFKKGGDIDELLIDAAGLDWRSDSGGDARKVVDQGTSILNANING 344
ENTGRWT EEH LFL+GLE HGKGWKKIA LIK+RTVVQIRTHAQKYFQKLAKA++NG GD + MEG GG +R TG +R ++ N +G + + A I+PAL F+ P G LMTD A+E L+RFL+PV + AT +++ A + P + P S+ G ++ G S + + P P W+ KG D+D LL + LDW +D+G Q + ++ +G
Sbjct: 96 ENTGRWTAEEHRLFLQGLEQHGKGWKKIASLIKSRTVVQIRTHAQKYFQKLAKARQNGEEGD-ITMEGR--GGNASITSNTTATAAMTNKRRRHITGTKRKVIQSVVASAQRQAKKANLTEIGNPSKNVAVPGIAPALAYFVTPTPSSSAGPDTDLMTDDHISGPALEDSLFRFLTPVPI--ATDHVNDVARQAGANPITLP-------STNG------------------QALASVPGRSPTGVQD---------LSIYPSWTDAKDPPSWYAKGADVDALLDVSDTLDWLADTGDLDEDYQPQANDVDESDFSG 372
BLAST of NO02G01990 vs. NCBI_GenBank
Match: XP_002184266.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC44444.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 119.4 bits (298), Expect = 3.800e-23 Identity = 108/284 (38.03%), Postives = 133/284 (46.83%), Query Frame = 0
Query: 63 ENTGRWTCEEHVLFLKGLEMHGKGWKKIAKLIKTRTVVQIRTHAQKYFQKLAKAKKNGHHGDMLGMEGSHFGG---------------KRVKFTGKRR----GLVYNSYLVGAEATSAAISPALQTFMPANLGMEGERVGLMTDKEEDAAIEKGL---YRFLSPVVLD-PATRNLDASAPEILPLPPSTPAMGVHHTSSRGXXXXXXXXXXXXXXXXXXDSIVMGDGGSDQDAESSLGEPLPTLARVTPEMYTRCGVPEWFKKGGDIDELLIDAAGLDWRSDSG 324
ENTGRWT EEH LFL+GLE HGKGWKKIA LIK+RTVVQIRTHAQKYFQKLAKA++NG GD + MEG GG +R + TG +R +V ++ G + +A +P +P L + T + G ++SP L PA D+ + PLP S P + G XXXXXXXXX G SD + P P W+ KG DID LL LDW D+G
Sbjct: 115 ENTGRWTAEEHRLFLQGLEQHGKGWKKIASLIKSRTVVQIRTHAQKYFQKLAKARQNGEEGD-VAMEGR--GGVASITSVSTTAVLPKRRRQTTGTKRKAIQSVVASAQRQGKKLAAAKTNPTRHHPLPPPLPTVAPALAHYTLPSTAMMAKNGTAVKEEYVSPTNLSGPALE--DSLFRFLTPLPVSEPPLN-EVARQAGANPISLPTDXXXXXXXXXXXXXSPTGVSD--------------LMLYPSWTDSKEPPSWYSKGADIDALLDMGDSLDWLDDTG 378
BLAST of NO02G01990 vs. NCBI_GenBank
Match: XP_002184267.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC44445.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 119.4 bits (298), Expect = 3.800e-23 Identity = 108/284 (38.03%), Postives = 133/284 (46.83%), Query Frame = 0
Query: 63 ENTGRWTCEEHVLFLKGLEMHGKGWKKIAKLIKTRTVVQIRTHAQKYFQKLAKAKKNGHHGDMLGMEGSHFGG---------------KRVKFTGKRR----GLVYNSYLVGAEATSAAISPALQTFMPANLGMEGERVGLMTDKEEDAAIEKGL---YRFLSPVVLD-PATRNLDASAPEILPLPPSTPAMGVHHTSSRGXXXXXXXXXXXXXXXXXXDSIVMGDGGSDQDAESSLGEPLPTLARVTPEMYTRCGVPEWFKKGGDIDELLIDAAGLDWRSDSG 324
ENTGRWT EEH LFL+GLE HGKGWKKIA LIK+RTVVQIRTHAQKYFQKLAKA++NG GD + MEG GG +R + TG +R +V ++ G + +A +P +P L + T + G F+SP L PA D+ + P+P S P + G XXXXXXXXX G SD + P P W+ KG DID LL LDW D+G
Sbjct: 115 ENTGRWTAEEHRLFLQGLEQHGKGWKKIASLIKSRTVVQIRTHAQKYFQKLAKARQNGEEGD-VAMEGR--GGVASITSVSTTAVLPKRRRQTTGTKRKAIQSVVASAQRQGKKLAAAKTNPTRHHPLPPPLPTVAPALAHYTLPSTAMMAKNGTAVKEEFVSPTNLSGPALE--DSLFRFLTPVPVSEPPLN-EVARQAGANPISLPTDXXXXXXXXXXXXXSPTGVSD--------------LMLYPSWTDSKEPPSWYSKGADIDALLDMGDSLDWLDDTG 378
BLAST of NO02G01990 vs. NCBI_GenBank
Match: EJK60893.1 (hypothetical protein THAOC_18691 [Thalassiosira oceanica]) HSP 1 Score: 105.1 bits (261), Expect = 7.500e-19 Identity = 49/58 (84.48%), Postives = 54/58 (93.10%), Query Frame = 0
Query: 63 ENTGRWTCEEHVLFLKGLEMHGKGWKKIAKLIKTRTVVQIRTHAQKYFQKLAKAKKNG 121
ENTGRWT EEH LFL+GLE HGKGWKKIA LIK+RTVVQIRTHAQKYFQKLAKA+++G
Sbjct: 308 ENTGRWTAEEHRLFLQGLERHGKGWKKIATLIKSRTVVQIRTHAQKYFQKLAKARQSG 365
BLAST of NO02G01990 vs. NCBI_GenBank
Match: CBN78551.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 104.0 bits (258), Expect = 1.700e-18 Identity = 47/62 (75.81%), Postives = 56/62 (90.32%), Query Frame = 0
Query: 59 ETGRENTGRWTCEEHVLFLKGLEMHGKGWKKIAKLIKTRTVVQIRTHAQKYFQKLAKAKKNG 121
+ G ENTGRWT +EH LFL+GLE+HGKGWK+IA LI+TRTVVQIRTHAQKYFQKL+KA+ +G
Sbjct: 25 QPGNENTGRWTSDEHRLFLRGLELHGKGWKQIATLIQTRTVVQIRTHAQKYFQKLSKAQASG 86
BLAST of NO02G01990 vs. NCBI_GenBank
Match: XP_002292776.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED89972.1 predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 101.7 bits (252), Expect = 8.200e-18 Identity = 49/61 (80.33%), Postives = 52/61 (85.25%), Query Frame = 0
Query: 63 ENTGRWTCEEHVLFLKGLEMHGKGWKKIAKLIKTRTVVQIRTHAQKYFQKLAKAKKNGHHG 124
ENTGRWT EEH LFL+GLE HGKGWKKIA LIK+RTVVQIRTHAQKYFQKLAKA+ G
Sbjct: 416 ENTGRWTAEEHRLFLQGLEQHGKGWKKIAGLIKSRTVVQIRTHAQKYFQKLAKARAGDGSG 476
BLAST of NO02G01990 vs. NCBI_GenBank
Match: OEU20545.1 (hypothetical protein FRACYDRAFT_165241, partial [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 99.8 bits (247), Expect = 3.100e-17 Identity = 47/54 (87.04%), Postives = 51/54 (94.44%), Query Frame = 0
Query: 67 RWTCEEHVLFLKGLEMHGKGWKKIAKLIKTRTVVQIRTHAQKYFQKLAKAKKNG 121
RWT EEH LFL+GLE+HGKGWKKIA LIK+RTVVQIRTHAQKYFQKLAKAK+NG
Sbjct: 1 RWTSEEHNLFLQGLELHGKGWKKIAGLIKSRTVVQIRTHAQKYFQKLAKAKQNG 54 The following BLAST results are available for this feature:
BLAST of NO02G01990 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO02G01990 ID=NO02G01990|Name=NO02G01990|organism=Nannochloropsis oceanica|type=gene|length=4141bpback to top protein sequence of NO02G01990.1 >NO02G01990.1-protein ID=NO02G01990.1-protein|Name=NO02G01990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=599bpback to top Synonyms
Publications
|