NO02G01960, NO02G01960 (gene) Nannochloropsis oceanica

Overview
NameNO02G01960
Unique NameNO02G01960
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length905
Alignment locationchr2:562633..563537 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:562633..563537 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO02G01960 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL020nonsL020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR005ngnoR005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR002ngnoR002Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G01960.1NO02G01960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G01960.1NO02G01960.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G01960 ID=NO02G01960|Name=NO02G01960|organism=Nannochloropsis oceanica|type=gene|length=905bp
ATGTTGCGGGAGCCTGATGGGAATGCCGCCGCCGCCGCCGCTGCTGCTGT
TGCCGCTGCGGACCGGAATAATTGTGGCATGAGTGGCATCCGCGAGGACA
AGGATAAAGCTACAAGAATTGCGACAGTTGCTGGAGGACATGGAGAAAGA
GGCTGCGTGTCTCGCTAgtgggatccagttcaattcttgttgctctaagc
cagacgtatgcagccttattccggcgcatcaaggagcgacctcgtgttcc
tctaaacaccatcacctcaagcagCTGCAGCAGTAGCAGCAATGGGAAAG
AGCTGGAGGAAGGGTTGTGCGACGCCCTTTGCAAAGTGCTTGAGCGAGTG
GAGGATGCGGACAGCCAGCTATTGTTTTACAAGGACTTATACGAATGTGA
GAAGACCGTACATGAGCGCAAGGGGAACATAGCAGAATTGGGCGCCACAA
TGGCATTGGTGAAAGGCGAGGCCTTACAGCACACCCCTGAGGAGCTCCCA
CGCATCGCCAAGATTCTCGCTAAAATGGGACGTAATCCAAAAGGTCCCGA
GCTCCTACTAAAGGAATCCCACCTACTCATCAAGCGTATCGTCCTCTGTG
TGGGCGGGAAGCAGAACCCAGATACCATCTGGTCGTTAACTCTTCCTGCC
CTTGACAGCATTCCTGACATGTACATGCATCAGCTTTGGGACCAACTCCG
AGTCCTTATCAACACTACCACCACCTCGCCTGCCTTGTCTACCAGCACCA
GCAAGAGCAGCCCAGTTGTCCGATTGAATTCTTTTGACCGACTTGCGACG
CCCAAACAACCGTCATTTTCTTCCTCTACCACTGCCAAACCCCGGCGCAC
GACCACCACAGTCGCCACCATTACTTCCCCTGTGTCTTCTACAATCAATA
GCTAG
back to top

protein sequence of NO02G01960.1

>NO02G01960.1-protein ID=NO02G01960.1-protein|Name=NO02G01960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=266bp
MLREPDGNAAAAAAAAVAAADRNNCGMSGIREDKDKATRIATVAGGHGER
GCVSRYCSSSSNGKELEEGLCDALCKVLERVEDADSQLLFYKDLYECEKT
VHERKGNIAELGATMALVKGEALQHTPEELPRIAKILAKMGRNPKGPELL
LKESHLLIKRIVLCVGGKQNPDTIWSLTLPALDSIPDMYMHQLWDQLRVL
INTTTTSPALSTSTSKSSPVVRLNSFDRLATPKQPSFSSSTTAKPRRTTT
TVATITSPVSSTINS*
back to top
Synonyms
Publications