NO02G01890, NO02G01890 (gene) Nannochloropsis oceanica

Overview
NameNO02G01890
Unique NameNO02G01890
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1492
Alignment locationchr2:542875..544366 +

Link to JBrowse

Properties
Property NameValue
DescriptionPolyadenylate-binding protein 2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:542875..544366 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR000504RRM_dom
Homology
[Close]
BLAST of NO02G01890 vs. NCBI_GenBank
Match: EWM30531.1 (polyadenylate-binding protein 2 [Nannochloropsis gaditana])

HSP 1 Score: 178.7 bits (452), Expect = 2.200e-41
Identity = 84/89 (94.38%), Postives = 86/89 (96.63%), Query Frame = 0 
Query:  115 IDENSIYVGQVDYEVTPEELQAHFQSCGTINRVTILCDKHTGRPKGFAYVEFLETASVEGALKLDSSLLKGRSIKVTHKRHNVHGFFRG 204
            IDENSIYVGQVDYEVTPEELQAHFQ CGTINRVTILCDKHTGRPKGFAYVEFLE ASV+GALKLD+SLLKGR IKVTHKRHNVHGFFRG
Sbjct:  120 IDENSIYVGQVDYEVTPEELQAHFQDCGTINRVTILCDKHTGRPKGFAYVEFLEKASVDGALKLDNSLLKGRPIKVTHKRHNVHGFFRG 208
[Close]
BLAST of NO02G01890 vs. NCBI_GenBank
Match: OON06948.1 (hypothetical protein BSLG_03494 [Batrachochytrium salamandrivorans])

HSP 1 Score: 133.3 bits (334), Expect = 1.100e-27
Identity = 62/90 (68.89%), Postives = 72/90 (80.00%), Query Frame = 0 
Query:  115 IDENSIYVGQVDYEVTPEELQAHFQSCGTINRVTILCDKHTGRPKGFAYVEFLETASVEGALKLDSSLLKGRSIKVTHKRHNVHGF-FRG 204
            +D  S+Y+G VDY  TPEE+Q HFQSCGTINRVTILCDK TG PKGFAY+EF +TASV+ A+ L+ S+ KGR IKVT KR N HGF FRG
Sbjct:  126 VDSRSVYIGNVDYSSTPEEIQVHFQSCGTINRVTILCDKWTGHPKGFAYLEFADTASVDNAVVLNESMFKGRLIKVTSKRTNQHGFNFRG 215
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BLAST of NO02G01890 vs. NCBI_GenBank
Match: OON06949.1 (hypothetical protein, variant [Batrachochytrium salamandrivorans])

HSP 1 Score: 133.3 bits (334), Expect = 1.100e-27
Identity = 62/90 (68.89%), Postives = 72/90 (80.00%), Query Frame = 0 
Query:  115 IDENSIYVGQVDYEVTPEELQAHFQSCGTINRVTILCDKHTGRPKGFAYVEFLETASVEGALKLDSSLLKGRSIKVTHKRHNVHGF-FRG 204
            +D  S+Y+G VDY  TPEE+Q HFQSCGTINRVTILCDK TG PKGFAY+EF +TASV+ A+ L+ S+ KGR IKVT KR N HGF FRG
Sbjct:   87 VDSRSVYIGNVDYSSTPEEIQVHFQSCGTINRVTILCDKWTGHPKGFAYLEFADTASVDNAVVLNESMFKGRLIKVTSKRTNQHGFNFRG 176
[Close]
BLAST of NO02G01890 vs. NCBI_GenBank
Match: ORY46445.1 (RNA-binding domain-containing protein [Rhizoclosmatium globosum])

HSP 1 Score: 132.5 bits (332), Expect = 1.800e-27
Identity = 62/89 (69.66%), Postives = 71/89 (79.78%), Query Frame = 0 
Query:  115 IDENSIYVGQVDYEVTPEELQAHFQSCGTINRVTILCDKHTGRPKGFAYVEFLETASVEGALKLDSSLLKGRSIKVTHKRHNVHGFFRG 204
            ID  S+YVG VDY  TPEELQ+HFQSCGTINR+TILCDK TG+PKGFAYVEF + A+VE A+ L+ SL KGR +KVT KR NV  F RG
Sbjct:   61 IDARSVYVGNVDYSSTPEELQSHFQSCGTINRITILCDKFTGQPKGFAYVEFADAANVETAITLNESLFKGRLLKVTPKRTNVPSFMRG 149
[Close]
BLAST of NO02G01890 vs. NCBI_GenBank
Match: KIP12859.1 (hypothetical protein PHLGIDRAFT_9891 [Phlebiopsis gigantea 11061_1 CR5-6])

HSP 1 Score: 130.6 bits (327), Expect = 6.800e-27
Identity = 57/85 (67.06%), Postives = 70/85 (82.35%), Query Frame = 0 
Query:  116 DENSIYVGQVDYEVTPEELQAHFQSCGTINRVTILCDKHTGRPKGFAYVEFLETASVEGALKLDSSLLKGRSIKVTHKRHNVHGF 201
            D+ SI++G VDY  TPEE+Q HFQ+CGTINRVTILCDK TG PKG+AY+EF +T SV+ AL +D+SL +GR IKVT KR N+HGF
Sbjct:   73 DQRSIFIGNVDYGATPEEIQQHFQACGTINRVTILCDKFTGHPKGYAYIEFADTESVDTALAMDNSLFRGRLIKVTSKRTNIHGF 157
[Close]
BLAST of NO02G01890 vs. NCBI_GenBank
Match: XP_007392270.1 (hypothetical protein PHACADRAFT_250387 [Phanerochaete carnosa HHB-10118-sp] >EKM59712.1 hypothetical protein PHACADRAFT_250387 [Phanerochaete carnosa HHB-10118-sp])

HSP 1 Score: 130.2 bits (326), Expect = 8.900e-27
Identity = 58/85 (68.24%), Postives = 69/85 (81.18%), Query Frame = 0 
Query:  116 DENSIYVGQVDYEVTPEELQAHFQSCGTINRVTILCDKHTGRPKGFAYVEFLETASVEGALKLDSSLLKGRSIKVTHKRHNVHGF 201
            D+ SI++G VDY  TPEE+Q HFQ+CGTINRVTILCDK TG PKGFAYVEF E  S++ AL +D+SL +GR IKVT KR N+HGF
Sbjct:   80 DQRSIFIGNVDYASTPEEIQQHFQACGTINRVTILCDKFTGHPKGFAYVEFAEPESIDTALAMDNSLFRGRLIKVTSKRTNIHGF 164
[Close]
BLAST of NO02G01890 vs. NCBI_GenBank
Match: XP_006681215.1 (hypothetical protein BATDEDRAFT_91010 [Batrachochytrium dendrobatidis JAM81] >EGF78140.1 hypothetical protein BATDEDRAFT_91010 [Batrachochytrium dendrobatidis JAM81] >OAJ44399.1 hypothetical protein BDEG_27629 [Batrachochytrium dendrobatidis JEL423] >OAJ44400.1 hypothetical protein, variant 1 [Batrachochytrium dendrobatidis JEL423] >OAJ44401.1 hypothetical protein, variant 2 [Batrachochytrium dendrobatidis JEL423])

HSP 1 Score: 129.0 bits (323), Expect = 2.000e-26
Identity = 58/87 (66.67%), Postives = 67/87 (77.01%), Query Frame = 0 
Query:  115 IDENSIYVGQVDYEVTPEELQAHFQSCGTINRVTILCDKHTGRPKGFAYVEFLETASVEGALKLDSSLLKGRSIKVTHKRHNVHGFF 202
            +D  S+Y+G VDY  TPEE+QAHFQSCGTINRVTILCDK TG PKGFAY+EF +  SV  A+ L  S+ KGR IKVT KR NVH F+
Sbjct:   66 VDFRSVYIGNVDYSATPEEIQAHFQSCGTINRVTILCDKFTGHPKGFAYLEFADAGSVANAVVLSESMFKGRLIKVTAKRTNVHAFY 152
[Close]
BLAST of NO02G01890 vs. NCBI_GenBank
Match: KIM45824.1 (hypothetical protein M413DRAFT_440868 [Hebeloma cylindrosporum h7])

HSP 1 Score: 128.6 bits (322), Expect = 2.600e-26
Identity = 60/88 (68.18%), Postives = 68/88 (77.27%), Query Frame = 0 
Query:  116 DENSIYVGQVDYEVTPEELQAHFQSCGTINRVTILCDKHTGRPKGFAYVEFLETASVEGALKLDSSLLKGRSIKVTHKRHNVHGFFRG 204
            D  S+YVG VDY  TPEE+Q HFQ+CGTINRVTILCDK TG PKG+AYVEF E   ++ AL LD+SL +GR IKVT KR NV GF RG
Sbjct:   77 DGRSVYVGNVDYSATPEEIQGHFQACGTINRVTILCDKFTGHPKGYAYVEFSEPEHIDAALALDNSLFRGRLIKVTAKRTNVPGFNRG 164
[Close]
BLAST of NO02G01890 vs. NCBI_GenBank
Match: SAM04111.1 (hypothetical protein [Absidia glauca])

HSP 1 Score: 128.6 bits (322), Expect = 2.600e-26
Identity = 60/86 (69.77%), Postives = 68/86 (79.07%), Query Frame = 0 
Query:  115 IDENSIYVGQVDYEVTPEELQAHFQSCGTINRVTILCDKHTGRPKGFAYVEFLETASVEGALKLDSSLLKGRSIKVTHKRHNVHGF 201
            +D  S+YVGQVDY  TPEELQAHFQSCGTINRVTILCDK TG PKG+AYVEF E + V  A+ L+ SL +GR +KVT KR NV GF
Sbjct:  175 VDSRSVYVGQVDYGATPEELQAHFQSCGTINRVTILCDKFTGHPKGYAYVEFAEPSFVSNAVALNESLFRGRLLKVTPKRTNVPGF 260
[Close]
BLAST of NO02G01890 vs. NCBI_GenBank
Match: OAX40654.1 (RNA-binding domain-containing protein [Rhizopogon vinicolor AM-OR11-026])

HSP 1 Score: 128.6 bits (322), Expect = 2.600e-26
Identity = 60/87 (68.97%), Postives = 69/87 (79.31%), Query Frame = 0 
Query:  116 DENSIYVGQVDYEVTPEELQAHFQSCGTINRVTILCDKHTGRPKGFAYVEFLETASVEGALKLDSSLLKGRSIKVTHKRHNVHGFFR 203
            D  S++VG VDY  TPEE+QAHFQ+CGTINRVTILCDK TG PKGFAYVEF ET  ++ AL +D+SL +GR IKVT KR NV GF R
Sbjct:   81 DGRSVFVGNVDYGATPEEIQAHFQACGTINRVTILCDKFTGHPKGFAYVEFAETEFIDAALAMDNSLFRGRLIKVTSKRTNVPGFNR 167
The following BLAST results are available for this feature:
BLAST of NO02G01890 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM30531.12.200e-4194.38polyadenylate-binding protein 2 [Nannochloropsis g... [more]
OON06948.11.100e-2768.89hypothetical protein BSLG_03494 [Batrachochytrium ... [more]
OON06949.11.100e-2768.89hypothetical protein, variant [Batrachochytrium sa... [more]
ORY46445.11.800e-2769.66RNA-binding domain-containing protein [Rhizoclosma... [more]
KIP12859.16.800e-2767.06hypothetical protein PHLGIDRAFT_9891 [Phlebiopsis ... [more]
XP_007392270.18.900e-2768.24hypothetical protein PHACADRAFT_250387 [Phanerocha... [more]
XP_006681215.12.000e-2666.67hypothetical protein BATDEDRAFT_91010 [Batrachochy... [more]
KIM45824.12.600e-2668.18hypothetical protein M413DRAFT_440868 [Hebeloma cy... [more]
SAM04111.12.600e-2669.77hypothetical protein [Absidia glauca][more]
OAX40654.12.600e-2668.97RNA-binding domain-containing protein [Rhizopogon ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR002ngnoR002Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006817NSK006817Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G01890.1NO02G01890.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|667773gene_773Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100013g14gene194Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G01890.1NO02G01890.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G01890 ID=NO02G01890|Name=NO02G01890|organism=Nannochloropsis oceanica|type=gene|length=1492bp
ATGAGCGCCGAGGCAGAATTGGCGGGGGCTGTGGACGAGAACGGGGGAGT
GGAGGGCGAGGAGGAGTACTACGAGGAAGAGGAGGAGGCCGGGATAGAGG
GCACAGAGGGGGTTGAGGGAGGAGGGGAAGGACAAGAAAGCGCTGCGGCT
GCCAGCCAGGACGACCCTGAGCATCTCGCCGCGGAGCTGCAGCGACAGCA
AGAAAAGATCCGACAGGAGGAGGAGAAGCTCAAGGAGATGATGAAGGACG
TTGAGGCCTCGACCGGGGGCGCGGCAGGCGCAGTAGCAGGGACAGGAGGG
GAGGAGGGGGCGAGTGGAGAAGCGGCGGCAGCGCAGGCCGCAATCGACGA
AAACTCAATgtaggttttgggaggaagggagtgatacggtgggcaggtcg
cggtgagtggaggagaagcgtgaccagaaattgagtgtgatatagcgcat
catggagacacggagtaaatgattgcagtcttagtctcgccctccctatc
cacagtgttgaatcctagcatttcgatataaccacttaccgattccaacc
ctgcgtccctcacgtccccctgttctaccccctccagCTACGTCGGTCAA
GTCGACTACGAAGTGACACCAGAAGAGCTCCAAGCCCACTTTCAGAGCTG
TGGAACCATCAATAGAGTCACCATCCTGTGTGATAAACACACGGGTCGTC
CCAAGGGCTTCGCGTACGTGGAATTCTTGGAGACGGCCTCCGTGGAGGGG
GCTCTGAAGTTGGACAGTTCCCTCTTGAAGGGCCGCTCGATAAAGGTGAC
ACATAAGCGGCACAATGTCCACGGCTTTTTTCGAGGGAGGGGGGGAGGGA
GGGGACGAGGGAGGGGGGGAGGATATAGGGGGGGCGGGGGTTATGGGGGG
GGGTATGGGTTTCACAGGCCGAGAGGGAGGGGGAGAGGGAGGGGGAGGTA
CCACCCTTACTATTAAGGGGCAGAGGAAAGAGAAGGAGGGGACAGGGAGG
AAGGGTTGAGTGGAGGTATTAGAAAGACGCACAGGATGTACACGTTTTTA
ACGTATCACTGTTTCTCTGTTTTTTGTGTTGGTAAGAGAGTGAGAAACGC
CGAGAGAGGGAGAGAGAAAAAAAAGGGAGAAGGAAGATAAATGGCGGTGC
GTCACACAAAAAGCGAGTGCAAGTTAAAGGAGAAGCTTTTAGAGAACGTG
AATTGATTACAATGACGACAACAATACCAATGTGTAGAGTGAGAGGAAGG
ATGGGTAAGCAAGCAAATATAATTCAAAGAAACAAACAAAAAAGAGGCGG
GAGCATCGCTTGCAGGAAAGGGTCAAAGGAGGTAAAGAAAAAGAAAAAAG
GAAGGGAGAGGAGCAACGAGAAATCAACAAGGTAAAAAAGAAGTATGAAG
AAGACAACAATAAAAAAGGACAAATTCCACGGACCCGCAGGTGCCAACGC
TTGCGTTCCTCCCGTCAAAGATTAAAAAAAGATCATTTGTCG
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protein sequence of NO02G01890.1

>NO02G01890.1-protein ID=NO02G01890.1-protein|Name=NO02G01890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=246bp
MSAEAELAGAVDENGGVEGEEEYYEEEEEAGIEGTEGVEGGGEGQESAAA
ASQDDPEHLAAELQRQQEKIRQEEEKLKEMMKDVEASTGGAAGAVAGTGG
EEGASGEAAAAQAAIDENSIYVGQVDYEVTPEELQAHFQSCGTINRVTIL
CDKHTGRPKGFAYVEFLETASVEGALKLDSSLLKGRSIKVTHKRHNVHGF
FRGRGGGRGRGRGGGYRGGGGYGGGYGFHRPRGRGRGRGRYHPYY*
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Synonyms
Publications