NO02G01640, NO02G01640 (gene) Nannochloropsis oceanica

Overview
NameNO02G01640
Unique NameNO02G01640
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1257
Alignment locationchr2:483158..484414 -

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Properties
Property NameValue
DescriptionThioredoxin
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:483158..484414 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0015035protein disulfide oxidoreductase activity
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0006662glycerol ether metabolic process
GO:0045454cell redox homeostasis
GO:0019725cellular homeostasis
GO:0008152metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR036249Thioredoxin-like_sf
IPR005746Thioredoxin
IPR013766Thioredoxin_domain
Vocabulary: Cellular Component
TermDefinition
GO:0005623cell
Homology
BLAST of NO02G01640 vs. NCBI_GenBank
Match: EWM30513.1 (thioredoxin [Nannochloropsis gaditana])

HSP 1 Score: 182.6 bits (462), Expect = 8.300e-43
Identity = 90/105 (85.71%), Postives = 98/105 (93.33%), Query Frame = 0
Query:   30 MVKIVGNKAEFDEVLASAGDKAVVVDFYATWCGPCKVIAPYYEELSKQFTNVVFIKVDVDENEEVASSAGISAMPTFQVYKNGKKVGELMGAAKDKLLALVEAHK 135
            MVKIV NKAEF EVL SAG+KAV+VDF+ATWCGPCKVIAPY+EELS +F +VVFIKVDVDENEEVA+ AGISAMPTFQVYK+GKKVGELMGAAKDKLL LVEAHK
Sbjct:    1 MVKIVSNKAEFYEVLNSAGNKAVIVDFFATWCGPCKVIAPYFEELSTKFPDVVFIKVDVDENEEVAAFAGISAMPTFQVYKDGKKVGELMGAAKDKLLGLVEAHK 105          
BLAST of NO02G01640 vs. NCBI_GenBank
Match: PRW57963.1 (Thioredoxin H-type [Chlorella sorokiniana])

HSP 1 Score: 145.6 bits (366), Expect = 1.100e-31
Identity = 71/103 (68.93%), Postives = 85/103 (82.52%), Query Frame = 0
Query:   31 VKIVGNKAEFDEVLASAGDKAVVVDFYATWCGPCKVIAPYYEELSKQFTNVVFIKVDVDENEEVASSAGISAMPTFQVYKNGKKVGELMGAAKDKLLALVEAH 134
            V +V +KAE+DE LA+   K VVVDF ATWCGPC++I PY+EELS QF  VVF+KVDVDE E+VA++ GISAMPTFQV+KNG KV EL+GAAKD+L ALVE H
Sbjct:    6 VIVVHSKAEWDEQLAANAGKTVVVDFTATWCGPCRMIGPYFEELSTQFEGVVFLKVDVDEVEQVAAACGISAMPTFQVWKNGAKVDELVGAAKDRLKALVEKH 108          
BLAST of NO02G01640 vs. NCBI_GenBank
Match: AFM43654.1 (thioredoxin 1 [Mytilus galloprovincialis])

HSP 1 Score: 140.6 bits (353), Expect = 3.600e-30
Identity = 61/105 (58.10%), Postives = 87/105 (82.86%), Query Frame = 0
Query:   30 MVKIVGNKAEFDEVLASAGDKAVVVDFYATWCGPCKVIAPYYEELSKQFTNVVFIKVDVDENEEVASSAGISAMPTFQVYKNGKKVGELMGAAKDKLLALVEAHK 135
            MVK++G+KAEFD V+  +GD  +VVDF+ATWCGPC  IAP Y++LS ++++ +F+KVDVDE E+VA+ +GISAMPTFQ YKNG KV E++GA+++KL  ++E +K
Sbjct:    1 MVKVIGSKAEFDGVVKGSGDTLIVVDFFATWCGPCVQIAPVYQKLSDEYSDCIFLKVDVDEVEDVAAESGISAMPTFQCYKNGNKVDEIVGASEEKLRGMIEKNK 105          
BLAST of NO02G01640 vs. NCBI_GenBank
Match: XP_013902637.1 (Thioredoxin H-type [Monoraphidium neglectum] >KIZ03618.1 Thioredoxin H-type [Monoraphidium neglectum])

HSP 1 Score: 137.9 bits (346), Expect = 2.300e-29
Identity = 64/100 (64.00%), Postives = 80/100 (80.00%), Query Frame = 0
Query:   34 VGNKAEFDEVLASAGDKAVVVDFYATWCGPCKVIAPYYEELSKQFTNVVFIKVDVDENEEVASSAGISAMPTFQVYKNGKKVGELMGAAKDKLLALVEAH 134
            VG+KAE+D+ LA AGDKA++VDF A WCGPC+ I PY+ +LS QF ++VF+KVDVD N EVA + GISAMPTFQV+K+  KV E +GA+KDKLLAL   H
Sbjct:    9 VGSKAEWDKQLADAGDKAIIVDFTAVWCGPCQAIGPYFVQLSTQFEDLVFLKVDVDANSEVAGACGISAMPTFQVFKHRAKVDEFIGASKDKLLALCTKH 108          
BLAST of NO02G01640 vs. NCBI_GenBank
Match: XP_023654104.1 (thioredoxin [Paramormyrops kingsleyae])

HSP 1 Score: 137.1 bits (344), Expect = 4.000e-29
Identity = 62/104 (59.62%), Postives = 80/104 (76.92%), Query Frame = 0
Query:   30 MVKIVGNKAEFDEVLASAGDKAVVVDFYATWCGPCKVIAPYYEELSKQFTNVVFIKVDVDENEEVASSAGISAMPTFQVYKNGKKVGELMGAAKDKLLALVEAH 134
            MV+ + N+A+FD+ L  AG K VV+DF ATWCGPCK IAP +++LS  + NVVF+KVDVDE ++VASS G+S MPTFQ YKNG K+GE  GA K+KL  +V+ H
Sbjct:    1 MVREINNQADFDKTLKDAGQKLVVIDFTATWCGPCKAIAPIFQKLSDDYQNVVFLKVDVDEAQDVASSCGVSCMPTFQFYKNGVKIGEFSGADKNKLEEMVKKH 104          
BLAST of NO02G01640 vs. NCBI_GenBank
Match: XP_011397516.1 (Thioredoxin H-type [Auxenochlorella protothecoides] >KFM24628.1 Thioredoxin H-type [Auxenochlorella protothecoides])

HSP 1 Score: 134.0 bits (336), Expect = 3.400e-28
Identity = 62/105 (59.05%), Postives = 88/105 (83.81%), Query Frame = 0
Query:   31 VKIVGNKAEFDEVL--ASAGDKAVVVDFYATWCGPCKVIAPYYEELSKQFTNVVFIKVDVDENEEVASSAGISAMPTFQVYKNGKKVGELMGAAKDKLLALVEAH 134
            V +V +KAE+D+VL  A    KAV+VDF+ATWCGPC++I+PY++ELS  + +VVF+K+DVD+ EEVA + GI+AMPTFQV+++G+KV EL+GA+KDKL +LVE +
Sbjct:    6 VVVVNSKAEWDQVLNEAKNSGKAVIVDFFATWCGPCRLISPYFQELSSNYDDVVFVKLDVDQVEEVAQALGITAMPTFQVFQSGEKVDELIGASKDKLKSLVEKY 110          
BLAST of NO02G01640 vs. NCBI_GenBank
Match: XP_005837151.1 (hypothetical protein GUITHDRAFT_85403 [Guillardia theta CCMP2712] >EKX50171.1 hypothetical protein GUITHDRAFT_85403 [Guillardia theta CCMP2712])

HSP 1 Score: 131.7 bits (330), Expect = 1.700e-27
Identity = 58/101 (57.43%), Postives = 78/101 (77.23%), Query Frame = 0
Query:   33 IVGNKAEFDEVLASAGDKAVVVDFYATWCGPCKVIAPYYEELSKQFTNVVFIKVDVDENEEVASSAGISAMPTFQVYKNGKKVGELMGAAKDKLLALVEAH 134
            ++  + EFD+ L SAG K VV+DF+ATWCGPCK+I+P++ ELS+++ +VVF KVDVD+NEE A S GISAMPTFQ YKNG  V  + GA+K+ LL  ++ H
Sbjct:    5 VLNTRKEFDDCLKSAGSKLVVIDFFATWCGPCKIISPFFHELSEKYPHVVFAKVDVDQNEETAQSCGISAMPTFQFYKNGNLVHTMRGASKEGLLQGIQEH 105          
BLAST of NO02G01640 vs. NCBI_GenBank
Match: 2YPM_A (Chain A, Crystal Structure Of Ancestral Thioredoxin Relative To Last Animal And Fungi Common Ancestor (lafca) From The Precambrian Period)

HSP 1 Score: 131.0 bits (328), Expect = 2.900e-27
Identity = 67/105 (63.81%), Postives = 84/105 (80.00%), Query Frame = 0
Query:   30 MVKIVGNKAEFDEVLASAGDKAVVVDFYATWCGPCKVIAPYYEELSKQF-TNVVFIKVDVDENEEVASSAGISAMPTFQVYKNGKKVGELMGAAKDKLLALVEAH 134
            MV  V NK EF+ +L+ A DK VVVDF ATWCGPCK+IAP +EELS+++  NVVF+KVDVDE E+VA+  GISAMPTFQ +KNGKKV EL GA ++KL A+++ H
Sbjct:    1 MVIQVTNKDEFESILSEA-DKLVVVDFTATWCGPCKMIAPKFEELSEEYPDNVVFLKVDVDEVEDVAAEYGISAMPTFQFFKNGKKVDELTGANQEKLKAMIKKH 104          
BLAST of NO02G01640 vs. NCBI_GenBank
Match: OXA59052.1 (Thioredoxin-2 [Folsomia candida])

HSP 1 Score: 130.2 bits (326), Expect = 4.900e-27
Identity = 63/111 (56.76%), Postives = 80/111 (72.07%), Query Frame = 0
Query:   24 PAINSIMVKIVGNKAEFDEVLASAGDKAVVVDFYATWCGPCKVIAPYYEELSKQFTNVVFIKVDVDENEEVASSAGISAMPTFQVYKNGKKVGELMGAAKDKLLALVEAHK 135
            PA    ++  V +K++FD  L  AG+K VVVDFYATWCGPCK++AP  EE++  FT+V+F+KVDVDENEEVAS  GIS MPTF   KNG+KV E  GA  DK+  L+  +K
Sbjct:   51 PASIMSLIHSVQDKSDFDTQLKDAGNKLVVVDFYATWCGPCKMVAPKLEEMAALFTDVIFLKVDVDENEEVASEYGISCMPTFIFIKNGEKVSEFSGANADKIKELIGTNK 161          
BLAST of NO02G01640 vs. NCBI_GenBank
Match: XP_013876492.1 (PREDICTED: thioredoxin-like [Austrofundulus limnaeus])

HSP 1 Score: 129.8 bits (325), Expect = 6.400e-27
Identity = 64/101 (63.37%), Postives = 77/101 (76.24%), Query Frame = 0
Query:   30 MVKIVGNKAEFDEVLASAGDKAVVVDFYATWCGPCKVIAPYYEELSKQFTNVVFIKVDVDENEEVASSAGISAMPTFQVYKNGKKVGELMGAAKDKLLALV 131
            MV+ + +K EFD VL+ AG K VVVDF ATWCGPCK IAP+ +EL KQFT+V+FIKVDVD+  +V+SS GIS MPTFQ YKN +KV E  GA +D L A V
Sbjct:    1 MVRHIESKDEFDGVLSGAGGKLVVVDFTATWCGPCKAIAPFLDELEKQFTDVIFIKVDVDDVPDVSSSCGISCMPTFQFYKNXQKVFEFSGANRDTLKAKV 101          
The following BLAST results are available for this feature:
BLAST of NO02G01640 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM30513.18.300e-4385.71thioredoxin [Nannochloropsis gaditana][more]
PRW57963.11.100e-3168.93Thioredoxin H-type [Chlorella sorokiniana][more]
AFM43654.13.600e-3058.10thioredoxin 1 [Mytilus galloprovincialis][more]
XP_013902637.12.300e-2964.00Thioredoxin H-type [Monoraphidium neglectum] >KIZ0... [more]
XP_023654104.14.000e-2959.62thioredoxin [Paramormyrops kingsleyae][more]
XP_011397516.13.400e-2859.05Thioredoxin H-type [Auxenochlorella protothecoides... [more]
XP_005837151.11.700e-2757.43hypothetical protein GUITHDRAFT_85403 [Guillardia ... [more]
2YPM_A2.900e-2763.81Chain A, Crystal Structure Of Ancestral Thioredoxi... [more]
OXA59052.14.900e-2756.76Thioredoxin-2 [Folsomia candida][more]
XP_013876492.16.400e-2763.37PREDICTED: thioredoxin-like [Austrofundulus limnae... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR033ncniR033Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR002ngnoR002Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006786NSK006786Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G01640.1NO02G01640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100013g39gene170Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G01640.1NO02G01640.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G01640 ID=NO02G01640|Name=NO02G01640|organism=Nannochloropsis oceanica|type=gene|length=1257bp
ACTTGAATCCGGGAAATTCGCGGGTTGTTCCTTCCCTTGGGGAAAGGACC
CTCATCATGCACCAAGGAAAAGGACATTAGGAAACATAACCGCCACATCC
ATATATTACCACTAGAGCAGCACATCCCATTTCAACAAGCATGTGGTCGT
CCAGCCTTGCCTAGCTATTGTCACTGCGTGCGGGACTGATTCAGACGCGG
TGGCTGTCATGAAGAACACACTTATTTATCCTCTTTCCCTTCCCCGCCTC
TCTTTCGTTGCCTTTGCAAGGACTATCCAAGTCCAGGCCACGCTCCATGT
ACCGGGACATAGGATATAGCATTGCACTGCCAGCACGTACAGTTGAATAT
TGCTCGGGCAGCAAGGAGGCTTAACCCTGAAGAGCCATCTTATCTGATGA
TGTCCCTTTCTCTCCCTTACCCACGCTATTTATATTCCTCCCTTATACAC
ATAGCTAAACCCTCTCCAGCAATCAATTCAATTATGGTCAAGATAGTCGG
TAATAAGGCGGAATTTGACGAGGTTCTAGCCAGCGCGGGGGACAAGGCCG
TGGTGGTGGACTTCTACGCCACATGGTGCGGGCCATGCAAGGTCATTGCC
CCTTACTATGAGGAGCTCTCCAAGCAATTCACCAACGTTGTTTTCATTAA
Ggtaggaatagaaaagagataacgatgggaagatatcaaagggggtgggg
ctataacatgtcgtttgactttctcctgatcactagtttctcctgctgaa
ccaaaaccatctctcccaacatgcccacccaccccgacaaaccattaagG
TTGACGTCGACGAGAACGAGGAAGTGGCGTCCTCTGCGGGCATCTCGGCC
ATGCCCACCTTCCAAGTGTACAAGAATGGGAAGAAGGTCGGGGAGCTGAT
GGGCGCTGCCAAGGACAAGCTCCTGGCCCTGGTCGAGGCACACAAGTAAA
GTATCAACTTTTTGCGAGCCGGGGAAAAAGTCAAATAAGAGAAGAGGAAA
TGCGGCTTTGAGTAGAAATGTATGTTATTAGTGGAAAGGTTGGCGTTTCC
ATGTCAAGTTAAGGAAGGTCTTGAAGAAGGGCGTAATGTGTGAGGAGACC
AGGTACGTTGTGCTTGTTTTGACAGGCAGGGCAAGGAGGGACAAAGAGGG
AAAAGATCGCGGGTGCTTGCTGCTTCAAATAATTCCTCGCAATACAGAGT
CTTTTACAATATAATGCGAAGAAACAAGAAAGAAAGAAGGGTCAAAGCAA
ATTTCAA
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protein sequence of NO02G01640.1

>NO02G01640.1-protein ID=NO02G01640.1-protein|Name=NO02G01640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=135bp
MMSLSLPYPRYLYSSLIHIAKPSPAINSIMVKIVGNKAEFDEVLASAGDK
AVVVDFYATWCGPCKVIAPYYEELSKQFTNVVFIKVDVDENEEVASSAGI
SAMPTFQVYKNGKKVGELMGAAKDKLLALVEAHK*
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Synonyms
Publications