NO02G01590, NO02G01590 (gene) Nannochloropsis oceanica

Overview
NameNO02G01590
Unique NameNO02G01590
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1329
Alignment locationchr2:467472..468800 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:467472..468800 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO02G01590 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR033ncniR033Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G01590.1NO02G01590.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|636048gene_739Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G01590.1NO02G01590.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G01590 ID=NO02G01590|Name=NO02G01590|organism=Nannochloropsis oceanica|type=gene|length=1329bp
ATGGACCATCAGCATCACCCGCAGCATCAGCAACCCCACCACCCGACCAG
ATCTGCTTCACCCTCGCAGGAAGTAGGCATCTTTATCCCCGACCTCCGAG
GCTTTTTGCGTCAACTCAAGCGTTATTGGAATGCGCTTGCCGTCTCGTCC
TCCTCGTCGTCGCCCTGGGCCCGTCTACCAAGCTACGACGACTTTGAAGC
ATTTTGCCTGGTGGCCCTCCGCGCCTACATGCACGCAAATCACGGCCATA
CCTATATTGAGCGTGGTTTCACAACCGATTCCTTCGCCAAAATTGAAGCG
ACCGTGGAGGCCATCCGCGTCCCTCTTTACGTCTACGACATGATTCGCGA
GATGGCCCGCCCCATGATCCTCTCTGACCACGAACACCTCCTGCCGTACA
TGCCTTTCCTGAGCATGCGTGCCACACGCGGTCAAGGATCTGTGCCGGGC
TTGGGCTTCAAGTGTGTCCGGGATCCCCTCGTGACCGTCATGCTCTCGGG
ACTTTTATGGGGAGACCAGCAGCCGCAGCAGCAGCCGCAGCAGCAGCAGC
AGCAGCAGCAAATGATGCCAATCGTTAAAGAAAATCCAGATTTAGTCAAA
TGTCCCGCGTCTATCTGCAATAAATCATCCTTGGTGGTATACGGTGTGCA
TACTCTTAGAGACAATCAGCCTAGTCTCCCTGAATGGCGCGTGAAGGCTT
GCTGCATCTTGCGTCATCTCCAACCATCCTGTCCGTGGTACCGAAGCATT
CAACTACGAGCTGTGACTGGAGGAGGGGAAGAAGGAGGTGGTAGAGGACG
AGGGGGGACAGGAGAGGGGCTTATTCAACCTGAGGGAACGTATGGAAAGC
CTGCTCGGTTCTACCGGGCGGACGAGAGCCCTGTGCTGCAACGGCCGGAG
GAGGATTACGCTGGAATAGCAGGGCAGCAGCAGCAGCAGCAGGAGGGACA
TCAGCAGAGGCAGCAGCAGCAGCAGGTCTGGGGGCAGTCGCCAGAATTGA
TGATGGAGTCTCAATCGAAGTTGCTGGTTGAGGGGGAGGACGACGAGGTC
GTGCTTGTGGCAAGAGAGCCTGCAGAGATGCCTCATTTGCTAAGGCATCT
GTTGGACAATGTAGGTGGGGGAAGTCTGGGTTATGACGTGCCACTATTTT
CATCTCAAGGAGTTGACATGCTTGCGCCCTTCCCTTGCGAGCGGTCAGCA
GCAGCAGCAGCAGTGGCAGCAAAAGCAGGGGCAGCAGCGGAGGTAGGAGG
ACATGGAAGAGGGCCGGGTGAGCGTGCGGCGACTACGGCAGCTGGCAAGA
TGGCAGGGCTGTTTAGGCTGCACAAATGA
back to top

protein sequence of NO02G01590.1

>NO02G01590.1-protein ID=NO02G01590.1-protein|Name=NO02G01590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=443bp
MDHQHHPQHQQPHHPTRSASPSQEVGIFIPDLRGFLRQLKRYWNALAVSS
SSSSPWARLPSYDDFEAFCLVALRAYMHANHGHTYIERGFTTDSFAKIEA
TVEAIRVPLYVYDMIREMARPMILSDHEHLLPYMPFLSMRATRGQGSVPG
LGFKCVRDPLVTVMLSGLLWGDQQPQQQPQQQQQQQQMMPIVKENPDLVK
CPASICNKSSLVVYGVHTLRDNQPSLPEWRVKACCILRHLQPSCPWYRSI
QLRAVTGGGEEGGGRGRGGTGEGLIQPEGTYGKPARFYRADESPVLQRPE
EDYAGIAGQQQQQQEGHQQRQQQQQVWGQSPELMMESQSKLLVEGEDDEV
VLVAREPAEMPHLLRHLLDNVGGGSLGYDVPLFSSQGVDMLAPFPCERSA
AAAAVAAKAGAAAEVGGHGRGPGERAATTAAGKMAGLFRLHK*
back to top
Synonyms
Publications