NO02G01340, NO02G01340 (gene) Nannochloropsis oceanica
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Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO02G01340 vs. NCBI_GenBank
Match: EWM30539.1 (atp-dependent rna helicase ythdc2-like protein [Nannochloropsis gaditana]) HSP 1 Score: 322.4 bits (825), Expect = 5.900e-84 Identity = 248/685 (36.20%), Postives = 328/685 (47.88%), Query Frame = 0
Query: 503 RGWDDQ-----VSSPPGSGEVGSRERGRARDSPPSKKSMKRGKNIVNPQQHELLLLIVRATYCAHFPRLAAGLQALPPFLPYPLDVSAGLPPKSDPLAQELSKVTRSAVVERGFREMLAGVEESVLRVEEEGGREGGPPQVHVSVSTALLIKLRKILFLKIKKDRIEIKNALEKNVIESVFRSVRTAGTSLGGNK-TDYAPVLLNTPWDVIGYCRKSILTRLILLGEAVMQQPEEWTKRLQLTVLIQRLAQPNNGVWEKEIKDIQRLANRLNKLQPPLNLPNTSPTNAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGVSGKVG--------RNVYHLASP----MADSSMLHSPVVSPPHSPSRCSKRITAQTAVQAADTAAVADAAMVTDE-KGGGDSWGLDTASA----AGAPHSSFMNVASSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKEKAARRKKNFKKVDFVLPTEEEIGAHYQHTTYLRSHAFEEAYGVPGTTVQVSKCIHCQVQTWTHRCSKCGRCHGCASVIFCKGAERQCNVSDKGHVNRLSERMDRAIWDAFKDNKKGFEPILALVEHAGVSVNFQRPAKGETALMAAAFQGNLTVLKELLALGADPSLTTGDKHTAWTFATKFNHKECAEVLATH 1165
RG DQ V GSG++ + G+ARD +I +Q EL + IVRAT+CAH L A P FLP P LPP +DPL + RS + E GFR ML GV +++LR+ G+ G P V + VS LLI+LR +LK + + K L++ +I+ ++V ++LG K YA +LL+ PWDV+ YC+KSIL RL L + V ++ EE R L+ +QRL++P++ +W + I L +L++LQ P LP+++ + + V K N + SP D+ L SPVVSPP SPS S+ I TAA+ D + G ++ L +A +G P + + +S A+EK A R KKVDF+LP EE+ G H + TTY+RSH E T +IFCKGAER+ +++ GHVNRLSERMDRAIWDAFKD KKGF+PILALV+HAGVSVNF RPAKGETALMAAAF G L +KELL+LGADP L T D HTA TFA K+NHKECAE+LA H
Sbjct: 327 RGRSDQNCGFSVKKAKGSGQIPA---GKARDG--------ISVSIKKDEQLELAVTIVRATFCAHISSLHGHCSADPAFLPCPFQSVGDLPPPTDPLGEVFGVKARSTLSECGFRAMLQGVGDALLRIIPRKGQAGEP--VEIMVSKDLLIELRNYFYLKSSNAK-KRKPTLKQEIIQRTAKAVCVGASALGKEKERGYAEMLLSIPWDVVAYCKKSILHRLTALVKRVSEE-EESVPRGLLSSALQRLSRPSSALWYDSSQKILSLMEQLDRLQIPPVLPDSALVSCRAHTENHQIEQSPNLTAMALSKDTGTSVETDRRRMLKPMNDVFDKTSPTLACDDDDNACVIYSPERNLEEDTDELGSPVVSPPLSPS--SRGI--------QQTAAIGRQGKRKDSYEKGPSAFSLAPVAACNTVSGFPAPTALPASS----------------------------------------LASSVPRDPRKLAREKIAHRTTAVKKVDFLLPNEEDSGDHGKRTTYMRSHVLEAIRATSRQTSYSKXXXXXXXXXXXXXXXXXXXXXXXXXIIFCKGAERRSRLTEIGHVNRLSERMDRAIWDAFKDVKKGFDPILALVQHAGVSVNFSRPAKGETALMAAAFHGKLATVKELLSLGADPCLKTADGHTASTFANKYNHKECAELLAMH 946
BLAST of NO02G01340 vs. NCBI_GenBank
Match: XP_005855487.1 (yth domain containing 2 [Nannochloropsis gaditana CCMP526] >XP_005855857.1 yth domain containing 2 [Nannochloropsis gaditana CCMP526] >EKU20506.1 yth domain containing 2 [Nannochloropsis gaditana CCMP526] >EKU20874.1 yth domain containing 2 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 172.9 bits (437), Expect = 5.800e-39 Identity = 83/106 (78.30%), Postives = 92/106 (86.79%), Query Frame = 0
Query: 1059 VSDKGHVNRLSERMDRAIWDAFKDNKKGFEPILALVEHAGVSVNFQRPAKGETALMAAAFQGNLTVLKELLALGADPSLTTGDKHTAWTFATKFNHKECAEVLATH 1165
+++ GHVNRLSERMDRAIWDAFKD KKGF+PILALV+HAGVSVNF RPAKGETALMAAAF G L +KELL+LGADP L T D HTA TFA K+NHKECAE+LA H
Sbjct: 1 MTEIGHVNRLSERMDRAIWDAFKDVKKGFDPILALVQHAGVSVNFSRPAKGETALMAAAFHGKLATVKELLSLGADPCLKTADGHTASTFANKYNHKECAELLAMH 106
BLAST of NO02G01340 vs. NCBI_GenBank
Match: CCI41455.1 (unnamed protein product [Albugo candida]) HSP 1 Score: 75.1 bits (183), Expect = 1.600e-9 Identity = 49/142 (34.51%), Postives = 73/142 (51.41%), Query Frame = 0
Query: 1034 RCSKCGRCHGCASVIFCKGA--------ERQCNVSDKGHVNRLSERMDRAIWDAFKDNKKGFEPILALVEHAGVSVNFQR-PAKGETALMAAAFQGNLTVLKELLALGADPSLTTGDKHTAWTFATKFNHKECAEVLATHAA 1167
RC +CG C C+ C A +V D+ L MD+AI+ AFK ++ F + +L+++ + VNFQR + TALMA A G +++LL+LGA+P LT + H AW FA + +K +L AA
Sbjct: 329 RCMRCGYCTKCSQRELCPNASMSEISQPSENLSVKDRNQ-QVLGSAMDQAIYRAFK--QEDFHSVFSLIQN-DMDVNFQRMESDHSTALMAGAHHGREDAVRKLLSLGANPCLTDKNGHEAWVFADRKGYKSLTALLKDEAA 466
BLAST of NO02G01340 vs. NCBI_GenBank
Match: CCI41456.1 (unnamed protein product [Albugo candida]) HSP 1 Score: 75.1 bits (183), Expect = 1.600e-9 Identity = 49/142 (34.51%), Postives = 73/142 (51.41%), Query Frame = 0
Query: 1034 RCSKCGRCHGCASVIFCKGA--------ERQCNVSDKGHVNRLSERMDRAIWDAFKDNKKGFEPILALVEHAGVSVNFQR-PAKGETALMAAAFQGNLTVLKELLALGADPSLTTGDKHTAWTFATKFNHKECAEVLATHAA 1167
RC +CG C C+ C A +V D+ L MD+AI+ AFK ++ F + +L+++ + VNFQR + TALMA A G +++LL+LGA+P LT + H AW FA + +K +L AA
Sbjct: 318 RCMRCGYCTKCSQRELCPNASMSEISQPSENLSVKDRNQ-QVLGSAMDQAIYRAFK--QEDFHSVFSLIQN-DMDVNFQRMESDHSTALMAGAHHGREDAVRKLLSLGANPCLTDKNGHEAWVFADRKGYKSLTALLKDEAA 455
BLAST of NO02G01340 vs. NCBI_GenBank
Match: CCI41457.1 (unnamed protein product [Albugo candida]) HSP 1 Score: 75.1 bits (183), Expect = 1.600e-9 Identity = 49/142 (34.51%), Postives = 73/142 (51.41%), Query Frame = 0
Query: 1034 RCSKCGRCHGCASVIFCKGA--------ERQCNVSDKGHVNRLSERMDRAIWDAFKDNKKGFEPILALVEHAGVSVNFQR-PAKGETALMAAAFQGNLTVLKELLALGADPSLTTGDKHTAWTFATKFNHKECAEVLATHAA 1167
RC +CG C C+ C A +V D+ L MD+AI+ AFK ++ F + +L+++ + VNFQR + TALMA A G +++LL+LGA+P LT + H AW FA + +K +L AA
Sbjct: 278 RCMRCGYCTKCSQRELCPNASMSEISQPSENLSVKDRNQ-QVLGSAMDQAIYRAFK--QEDFHSVFSLIQN-DMDVNFQRMESDHSTALMAGAHHGREDAVRKLLSLGANPCLTDKNGHEAWVFADRKGYKSLTALLKDEAA 415
BLAST of NO02G01340 vs. NCBI_GenBank
Match: GAX93609.1 (Hypothetical protein PINS_001508 [Pythium insidiosum]) HSP 1 Score: 68.6 bits (166), Expect = 1.500e-7 Identity = 44/105 (41.90%), Postives = 63/105 (60.00%), Query Frame = 0
Query: 1058 NVSDKGHVNRLSERMDRAIWDAFKDNKKGFEPILALVEHAGVSVNFQR-PAKGETALMAAAFQGNLTVLKELLALGADPSLTTGDKHTAWTFATKFNHKECAEVL 1162
+VSD+ +V L MD+AI+ AFK + F + +LV + G+ VNFQR + TALMAAA+ G +LL+LGA+P+L + AW FA + H E A+ L
Sbjct: 339 SVSDR-NVQVLGSAMDQAIFKAFK--SEDFYAVFSLVSN-GMDVNFQRVESDHSTALMAAAYYGREDATNKLLSLGANPTLKDSNGDAAWVFAKRRGHTELADKL 439 The following BLAST results are available for this feature:
BLAST of NO02G01340 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 6
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO02G01340 ID=NO02G01340|Name=NO02G01340|organism=Nannochloropsis oceanica|type=gene|length=6716bpback to top protein sequence of NO02G01340.1 >NO02G01340.1-protein ID=NO02G01340.1-protein|Name=NO02G01340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1186bpback to top Synonyms
Publications
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