NO02G01310, NO02G01310 (gene) Nannochloropsis oceanica

Overview
NameNO02G01310
Unique NameNO02G01310
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2901
Alignment locationchr2:391996..394896 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:391996..394896 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002893Znf_MYND
Homology
The following BLAST results are available for this feature:
BLAST of NO02G01310 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR033ncniR033Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G01310.1NO02G01310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|140225gene_710Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G01310.1NO02G01310.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G01310 ID=NO02G01310|Name=NO02G01310|organism=Nannochloropsis oceanica|type=gene|length=2901bp
ATGGCGACGCCCCTCCCTGCATCTCAGCCTCCTGCATCCTCTCCACCGGC
CATGCATTGGTGCAGCGGCTGTGCGGCCACGAAAGAGACCCGAACGCTGG
CCTGCGCCAAGTGCAAAGCCGCCTGGTTCTGCTCCAAGGATTGCCAGACC
ACGGCGTGGAAGGCTGGGCACAAAGAAGCCTGCAAGTCGACATTGCTCTA
CAACCGCAAAGCATACCCGCCCGAACTACTCAGTAAAGCCCCCCTCGACG
TAATCGACAAATGGGTCACCCACGTCGCTTCTCTTCCTCATTTTACAAGC
CCTGTCGATATTTTGCATCGACGAGCAGCGTTGCAGATGCTGTTGGCGTG
CCTTGTTATCCTCCCTCCAGACGCGCCCGGCCGTTTGGGTCTGTTGCCAG
GCTTCGCGCGTATTTTGCAGGAGAGAAAGCAGCGAGAAGGCAGGAGCAGC
AGCCACGGCAGCAGGGATGATGGGAAGGATGAAGATTTGTGTAAATTGAC
CCTGAAAATCTTGGTCGTGTGCCTACAGCAGGATAAATTAAATGCTTCCC
TCTTTTACCTCTGCGGAGGTACGCAAGCCCTTGCCGATTTAGTGTTTCTC
GACCGTTCCTCTTCTTCTTCCTCAACTGCATCTCCTTCAGACGAATGGAC
ACCGGTAGGGGAACGGCAAGTCCTTGCCTTGTCGGCGTTGGTGCATGCCT
TAATGGAGCCCAACGACTTCGTGCTGGTCGGTAACACCTTGGGGGTATAT
CCCGCGACCGAGGTGCTTGTTCCTGTCTTGCTACATTTGATGGACCCCTG
TGTGCCAAAGGCAGAGGAAGAGGAAGACAGGGAGGAGGTGTGGAAAGCCC
GGCTAAGGCAACACCAGGATGCAACCAATTTATTGACGCTGTGTATTAAT
TTGAAGACGGAGGTGCCCTTGCAATTGTGGCAGGAAGGGTTTCGTATCCT
TAAGGAGCTCACTCGATTTTACCTTGAGCCTCGACCCAGTAGTACTAGCA
AAAAAAAATGTTGTTGTAGCAGTAGTAGTGGTTGTTGTAGTTGTAGTTGT
AGTCGTAGTAGTAGTAGCAGCAACACCAGCAGCGGCACCAGCAGCAGTGG
CAGTGGTAGTACCAGCAATAGCAGCAGCAGCAGCAGCAGCTGCAACAGCG
ACAAGAAAAGTCTAGGTGAACTCATCATGGAGAATGCCCGCCTTTCCCTC
TTGTCGTCGAGCAGCAGCGCCACGCAAGCCCAAGATGAATCCTCCTCCTT
CTCCTCGTCCTCCTCTTCAGCCCAGAGTCTTAGCGTGCATCTCCGATGGT
TGCTACTTGATATCAACGCGCTACTTTCCGGTTTTGTCGATCACTTCCCC
CAAGCCGTCCATCTCGTTCTCCCCCTCGGCCTCCCTACCCTCTTAGGCCT
GCACCTCTCTTTCAGTGCCGATGAAAGCGTGCAGCAGACCGCGTTGCTCA
TCACGAGGCATTGTCTCAAGGGCACGAGTTCTCTCCATGACTTCAACGAC
ATCGTGGGTGCGAATGAATCGAAAATATTCGGTGAAACGGTAAAGACGAT
AAAAAAGGCAGTGGCGGCCTTGCTAGAGATGGGGGCAGACGCCCGCATTG
AGACCAAGAAGAAGAAAAAGAGGAAGGAGAAGGGAAGGAAGAAGGCGGCA
GATGAGGAAGAGAAGGAGAAAGAGATCCAGGTAGCTTTATTAAAGGGAGG
CTTATCCCTCAGCGCGGAATGCCTGAAAGCGAATCCTTCCCTTCTCCAAG
CCTACCTTCCTAACCTCTTCCTCGTCCTTCGCCTCGTCCTCACCAACTGC
TGCCCAGAAGAAAAGGGAGAGAGGGAGAGAGAGGAGGTCGAACAATCGCA
CATTCTTTCTGCAGCCTTGAATGAAGCCTTGGCCTGCGTCCTCAATGCCC
TCCTCTACCTCCCTTCTGACGCACTCGATTCCCTCCTAGGTTGCAACGAC
AGTGACAGCAGCAGCAGAAGCAGCAGAAGCAGCAGAAGCGGGAATGCATG
GCTGCTGGCGTCTCTACATCGCCTGTTGAACAAACACAAGCATGACCGTC
CCCCAAGTGTGGCCTCCGTGATTTGTAATATATATGCCGTCCTGGCAGGG
TGCAGCAGCAGCGGCGGCGGCAGCGGCGATAAAGTCAAGGCTGAAGAGGT
TGAGGACCAGAAGAACGACATCCCTCTATTGCTCACCCGCTTCTTCCTGG
ACGAGAAGGTCCAGGACCACGCACTCATTAAAGAGGCTATATTCGCTTTG
CAAGAGTTTGTTTGGGCATGTCCTCAAATGGTACTCCCACAGCTTCGTGC
CATGCCTGACGCGGCTGCACTCCAGACACGGCTGGGAAATCTGGTTGAAT
CTGGGGCGGTGGAATGCGAGTATTTGGCGCGAGTGCTGAAGGGAGGTGAG
GGGGGAGAGGATGATGAGAAGCTACTGGGCACCACGCCGATCAAAACGGG
GGACTGGATGGATCATGGGGGTTTGGGGCGGAGTGTGGTGAAGgtacgtc
tcttattaaaagttgaggcgttctttccttctcgctttcctcaatacctc
atcgccccttctcgtctcatccacttttacccctccctcaatccctccct
cctttgcgtttcaatgtacacacagACCATGATGCACGACCGCCTCGAAC
AATTTCTGCTTGCCCGAAATGAAATTAATTGCGGGGCGAGCGGTCGCCCC
CTGGCTGAAGGAGATCGGATCATGCGCCTCACGAAATGCCAGCATTGGTT
TCTGGAAGGAGAGCTGCGCAAGGTCGTTTTGGGGGAAGACAACGAGGCTG
TGGAAGAGGGGGGGGTATTATCTAGGTATTGGAAGGAGGACCGCACGGAG
ACTTTGTGTCCCGTTTGTGGGCGGCACATGCGTGTGGAAATTCGTGACTA
G
back to top

protein sequence of NO02G01310.1

>NO02G01310.1-protein ID=NO02G01310.1-protein|Name=NO02G01310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=923bp
MATPLPASQPPASSPPAMHWCSGCAATKETRTLACAKCKAAWFCSKDCQT
TAWKAGHKEACKSTLLYNRKAYPPELLSKAPLDVIDKWVTHVASLPHFTS
PVDILHRRAALQMLLACLVILPPDAPGRLGLLPGFARILQERKQREGRSS
SHGSRDDGKDEDLCKLTLKILVVCLQQDKLNASLFYLCGGTQALADLVFL
DRSSSSSSTASPSDEWTPVGERQVLALSALVHALMEPNDFVLVGNTLGVY
PATEVLVPVLLHLMDPCVPKAEEEEDREEVWKARLRQHQDATNLLTLCIN
LKTEVPLQLWQEGFRILKELTRFYLEPRPSSTSKKKCCCSSSSGCCSCSC
SRSSSSSNTSSGTSSSGSGSTSNSSSSSSSCNSDKKSLGELIMENARLSL
LSSSSSATQAQDESSSFSSSSSSAQSLSVHLRWLLLDINALLSGFVDHFP
QAVHLVLPLGLPTLLGLHLSFSADESVQQTALLITRHCLKGTSSLHDFND
IVGANESKIFGETVKTIKKAVAALLEMGADARIETKKKKKRKEKGRKKAA
DEEEKEKEIQVALLKGGLSLSAECLKANPSLLQAYLPNLFLVLRLVLTNC
CPEEKGEREREEVEQSHILSAALNEALACVLNALLYLPSDALDSLLGCND
SDSSSRSSRSSRSGNAWLLASLHRLLNKHKHDRPPSVASVICNIYAVLAG
CSSSGGGSGDKVKAEEVEDQKNDIPLLLTRFFLDEKVQDHALIKEAIFAL
QEFVWACPQMVLPQLRAMPDAAALQTRLGNLVESGAVECEYLARVLKGGE
GGEDDEKLLGTTPIKTGDWMDHGGLGRSVVKTMMHDRLEQFLLARNEINC
GASGRPLAEGDRIMRLTKCQHWFLEGELRKVVLGEDNEAVEEGGVLSRYW
KEDRTETLCPVCGRHMRVEIRD*
back to top
Synonyms
Publications