NO02G01250, NO02G01250 (gene) Nannochloropsis oceanica

Overview
NameNO02G01250
Unique NameNO02G01250
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1716
Alignment locationchr2:378857..380572 -

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Properties
Property NameValue
DescriptionUbiquitin
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:378857..380572 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR029071Ubiquitin-rel_dom
IPR000626Ubiquitin-like
IPR019956Ubiquitin
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO02G01250 vs. NCBI_GenBank
Match: EWM30508.1 (Ubiquitin [Nannochloropsis gaditana])

HSP 1 Score: 310.5 bits (794), Expect = 7.700e-81
Identity = 241/383 (62.92%), Postives = 263/383 (68.67%), Query Frame = 0 
Query:    1 MSSRQGYSALSEEHYVDVEAPAGAEGGSQV-------INSPAIPTATVAPSPIXXXXXXXXXXXXXXXXXASVNPDLFQYPIRILDTQGHEHSLDGDSPASTIGALKLKVQTVAGVPPPQQRLIFAGRMLQDQQTLQSCNIQPGCVIHLFARPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIGPGTHLNPFGLPSSFGDPELLRSTHSVKLFSSCLVAICAMQLLLLSLQLVASWSMGG----GTEGRGGEVPPIPGGDDDNDGVSEEKGAEEIGAVFVLQVMMNILGLYVGLVGIRSANTLQLQSSKIYLYGLLVVGTAWMATRIIWAINSVTSGYDVDVGPTPSSTPPDSXXXXXXXXXXXXXXXXXXXYQQMDRGELI 373
            MSSRQGY ALSEE Y DVEA +G +G + V                       XXXXXXXXXXXXXXXXX           IRILDT G EH+LD +SP STIG LK+KVQ  +GV P QQRLIFAGRMLQDQQTL+SC ++ GCVIHLFARPP   XXXXXXXXXXXXX             +GPGTHLNP+GLPSSFGDPEL+RSTHSVKLFSSCLVAICAMQLLLL LQ++A+WSMG                                        +LQVMMN LGLYVGLVGIRSANTLQLQS+K+Y+YGLLVVGTAWMA+RIIWA+NSV  GYDVDVGP P       XXXXXXXXXXXXXXXXXXXYQQMDRGELI
Sbjct:    1 MSSRQGYRALSEESY-DVEALSGLDGQADVPPTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIRILDTHGKEHALDAESPLSTIGTLKVKVQAASGVSPAQQRLIFAGRMLQDQQTLRSCGVEAGCVIHLFARPP---XXXXXXXXXXXXXVNPTSGAGTEGGMVGPGTHLNPYGLPSSFGDPELIRSTHSVKLFSSCLVAICAMQLLLLGLQMLAAWSMGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLILQVMMNTLGLYVGLVGIRSANTLQLQSTKVYVYGLLVVGTAWMASRIIWAVNSVNLGYDVDVGPQP---XXXXXXXXXXXXXXXXXXXXXXXYQQMDRGELI 376
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BLAST of NO02G01250 vs. NCBI_GenBank
Match: EWM30509.1 (Ubiquitin [Nannochloropsis gaditana])

HSP 1 Score: 308.9 bits (790), Expect = 2.300e-80
Identity = 242/389 (62.21%), Postives = 264/389 (67.87%), Query Frame = 0 
Query:    1 MSSRQGYSALSEEHYVDVEAPAGAEGGSQVINSPAIPTAT-------------VAPSPIXXXXXXXXXXXXXXXXXASVNPDLFQYPIRILDTQGHEHSLDGDSPASTIGALKLKVQTVAGVPPPQQRLIFAGRMLQDQQTLQSCNIQPGCVIHLFARPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIGPGTHLNPFGLPSSFGDPELLRSTHSVKLFSSCLVAICAMQLLLLSLQLVASWSMGG----GTEGRGGEVPPIPGGDDDNDGVSEEKGAEEIGAVFVLQVMMNILGLYVGLVGIRSANTLQLQSSKIYLYGLLVVGTAWMATRIIWAINSVTSGYDVDVGPTPSSTPPDSXXXXXXXXXXXXXXXXXXXYQQMDRGELI 373
            MSSRQGY ALSEE Y DVEA +G +G         +P  T                   XXXXXXXXXXXXXXXXX           IRILDT G EH+LD +SP STIG LK+KVQ  +GV P QQRLIFAGRMLQDQQTL+SC ++ GCVIHLFARPP   XXXXXXXXXXXXX             +GPGTHLNP+GLPSSFGDPEL+RSTHSVKLFSSCLVAICAMQLLLL LQ++A+WSMG                                        +LQVMMN LGLYVGLVGIRSANTLQLQS+K+Y+YGLLVVGTAWMA+RIIWA+NSV  GYDVDVGP P       XXXXXXXXXXXXXXXXXXXYQQMDRGELI
Sbjct:    1 MSSRQGYRALSEESY-DVEALSGLDGQD-------VPPTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIRILDTHGKEHALDAESPLSTIGTLKVKVQAASGVSPAQQRLIFAGRMLQDQQTLRSCGVEAGCVIHLFARPP---XXXXXXXXXXXXXVNPTSGAGTEGGMVGPGTHLNPYGLPSSFGDPELIRSTHSVKLFSSCLVAICAMQLLLLGLQMLAAWSMGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLILQVMMNTLGLYVGLVGIRSANTLQLQSTKVYVYGLLVVGTAWMASRIIWAVNSVNLGYDVDVGPQP---XXXXXXXXXXXXXXXXXXXXXXXYQQMDRGELI 375
[Close]
BLAST of NO02G01250 vs. NCBI_GenBank
Match: XP_005852660.1 (hypothetical protein NGA_0699500, partial [Nannochloropsis gaditana CCMP526] >EKU23171.1 hypothetical protein NGA_0699500, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 104.8 bits (260), Expect = 6.500e-19
Identity = 84/151 (55.63%), Postives = 94/151 (62.25%), Query Frame = 0 
Query:    1 MSSRQGYSALSEEHYVDVEAPAGAEGGSQVINSPAIPTAT-------------VAPSPIXXXXXXXXXXXXXXXXXASVNPDLFQYPIRILDTQGHEHSLDGDSPASTIGALKLKVQTVAGVPPPQQRLIFAGRMLQDQQTLQSCNIQPGC 139
            MSSRQGY ALSEE Y DVEA +G +G         +P  T                   XXXXXXXXXXXXXXXXX           IRILDT G EH+LD +SP STIG LK+KVQ  +GV P QQRLIFAGRMLQDQQTL+SC ++ GC
Sbjct:    1 MSSRQGYRALSEESY-DVEALSGLDGQD-------VPPTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIRILDTHGKEHALDAESPLSTIGTLKVKVQAASGVSPAQQRLIFAGRMLQDQQTLRSCGVEAGC 143
[Close]
BLAST of NO02G01250 vs. NCBI_GenBank
Match: GAT52727.1 (cre-ned-8 protein [Mycena chlorophos])

HSP 1 Score: 69.7 bits (169), Expect = 2.300e-8
Identity = 36/68 (52.94%), Postives = 44/68 (64.71%), Query Frame = 0 
Query:   75 IRILDTQGHEHSLDGDSPASTIGALKLKVQTVAGVPPPQQRLIFAGRMLQDQQTLQSCNIQPGCVIHL 143
            I++    G E  LD DS    I  +K KV+  +GVPPPQQRLIF+GR LQD +T    NIQPG V+HL
Sbjct:    3 IKVKTLTGKEIELDIDS-EDKITRIKEKVEEQSGVPPPQQRLIFSGRQLQDDKTAAEANIQPGAVLHL 69
[Close]
BLAST of NO02G01250 vs. NCBI_GenBank
Match: KIY43383.1 (ubiquitin [Fistulina hepatica ATCC 64428])

HSP 1 Score: 68.2 bits (165), Expect = 6.700e-8
Identity = 34/68 (50.00%), Postives = 44/68 (64.71%), Query Frame = 0 
Query:   75 IRILDTQGHEHSLDGDSPASTIGALKLKVQTVAGVPPPQQRLIFAGRMLQDQQTLQSCNIQPGCVIHL 143
            I++    G E  LD D P   I  +K KV+  +GVPPPQQRLIF GR +QD+++    NIQPG V+HL
Sbjct:    3 IKVKTLTGKEIELDID-PDDKIARIKEKVEEQSGVPPPQQRLIFGGRQMQDEKSANDFNIQPGSVLHL 69
[Close]
BLAST of NO02G01250 vs. NCBI_GenBank
Match: CCI45036.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 67.4 bits (163), Expect = 1.100e-7
Identity = 35/71 (49.30%), Postives = 43/71 (60.56%), Query Frame = 0 
Query:   75 IRILDTQGHEHSLDGDSPASTIGALKLKVQTVAGVPPPQQRLIFAGRMLQDQQTLQSCNIQPGCVIHLFAR 146
            +RILDT G  + +  D   S +  LK KV   A VP P QRLIF GR+L D+Q LQ C ++ G  IHLF R
Sbjct:  144 VRILDTSGKFYKIQCDLDCSVL-ELKTKVLECADVPIPSQRLIFRGRVLVDEQVLQQCEVEHGHTIHLFVR 213
[Close]
BLAST of NO02G01250 vs. NCBI_GenBank
Match: ESK83456.1 (cre-ned-8 protein [Moniliophthora roreri MCA 2997] >KTB37435.1 hypothetical protein WG66_9987 [Moniliophthora roreri])

HSP 1 Score: 67.0 bits (162), Expect = 1.500e-7
Identity = 34/68 (50.00%), Postives = 43/68 (63.24%), Query Frame = 0 
Query:   75 IRILDTQGHEHSLDGDSPASTIGALKLKVQTVAGVPPPQQRLIFAGRMLQDQQTLQSCNIQPGCVIHL 143
            I++    G E  LD D P   I  +K KV+  +GVPPPQQRLIF+GR +QD +T    NI PG V+HL
Sbjct:    3 IKVKTLTGKEIELDID-PEDKITRIKEKVEEQSGVPPPQQRLIFSGRQMQDDKTASEFNITPGAVLHL 69
[Close]
BLAST of NO02G01250 vs. NCBI_GenBank
Match: KZV64572.1 (ubiquitin [Peniophora sp. CONT])

HSP 1 Score: 64.7 bits (156), Expect = 7.400e-7
Identity = 31/68 (45.59%), Postives = 43/68 (63.24%), Query Frame = 0 
Query:   75 IRILDTQGHEHSLDGDSPASTIGALKLKVQTVAGVPPPQQRLIFAGRMLQDQQTLQSCNIQPGCVIHL 143
            I++    G E  LD + P   I  +K KV+  +GVPPPQQRLIF GR + D++T + CN+  G V+HL
Sbjct:    3 IKVKTLTGKEIELDIE-PDDKITRIKEKVEEQSGVPPPQQRLIFGGRQMPDEKTAKECNVSAGAVLHL 69
The following BLAST results are available for this feature:
BLAST of NO02G01250 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 8
Match NameE-valueIdentityDescription
EWM30508.17.700e-8162.92Ubiquitin [Nannochloropsis gaditana][more]
EWM30509.12.300e-8062.21Ubiquitin [Nannochloropsis gaditana][more]
XP_005852660.16.500e-1955.63hypothetical protein NGA_0699500, partial [Nannoch... [more]
GAT52727.12.300e-852.94cre-ned-8 protein [Mycena chlorophos][more]
KIY43383.16.700e-850.00ubiquitin [Fistulina hepatica ATCC 64428][more]
CCI45036.11.100e-749.30unnamed protein product [Albugo candida][more]
ESK83456.11.500e-750.00cre-ned-8 protein [Moniliophthora roreri MCA 2997]... [more]
KZV64572.17.400e-745.59ubiquitin [Peniophora sp. CONT][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR033ncniR033Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006740NSK006740Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G01250.1NO02G01250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|140067gene_706Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100013g80gene137Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G01250.1NO02G01250.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G01250 ID=NO02G01250|Name=NO02G01250|organism=Nannochloropsis oceanica|type=gene|length=1716bp
ATGTCGTCGCGCCAAGGTTATAGCGCCCTGTCCGAGGAGCACTATGTCGA
TGTAGAGGCCCCCGCAGGTGCTGAAGGAGGGTCACAAGgtaaagagaaag
gtcgcaagaatgataaggaggaggagaaggagggaaaagaaaaagatatg
cgtgcctcactgttaaactgcgcactcaactcctctcatgtctctgacac
accccacagTCATCAACTCCCCGGCCATTCCCACCGCCACAGTCGCCCCC
TCTCCCATTGCCGCCTCGTCGACTACGTCCTCTTCTTCTCCTCCCCCCGG
TGCTCCTGCCGCTTCCGTCAACCCCGATCTATTCCAATATCCGATCCGAA
TCCTGGACACCCAAGGCCACGAACACTCCCTCGATGGCGACAGCCCCGCC
TCCACCATCGGCGCCTTGAAACTCAAGGTCCAAACCGTCGCCGGCGTCCC
GCCCCCTCAGCAACGCCTCATCTTTGCCGGTCGCATGCTTCAAGACCAAC
AAACCCTCCAATCCTGTAACATTCAACCCGGATGTGTCATCCATCTCTTC
GCCCGTCCACCCCCTCCCCCTCCCGGGGCTCCCGGTAGCATCGCCAGCAT
CGTGGGTCCAGGCGCTCCTGGCGCTAATGGAGGAGAGGGAGGCGTGGCGA
TTGGGCCTGGTACCCACTTAAATCCATTTGGGCTGCCAAGTAGTTTTGGT
GATCCAGAACTCCTTCGAAGCACACATTCAGTGAAATTGTTCTCGTCGTG
CCTAGTGGCGATATGTGCGATGCAATTGTTGTTGCTGTCGTTGCAGCTGG
TGGCAAGCTGGAGTATGGGAGGAGGAACGGAGGGAAGGGGAGGGGAGGTG
CCGCCCATTCCTGGAGGGGATGATGATAATGATGGGGTGTCGGAAGAGAA
AGGAGCGGAAGAAATAGGCGCGGTGTTCGTTTTGCAAGTGATGATGAACA
TCTTGGGGCTTTATGTGGGCTTGGTTGGGATAAGGAGgtgagaagggagg
aaggaaggaagggagtgaggaagtaagggagggagggagggagaaatgga
accaagaaagtgtgatttgactcactcaaagtaatgtactcctctatttc
cccttcttctctctacagCGCCAACACCCTCCAGCTGCAATCAAGCAAGA
TCTACCTCTACGGTCTCCTGGTCGTAGGAACAGCCTGGATGGCGACAAGG
ATCATATGGGCCATTAATAGTGTCACCAGTGGCTACGACGTGGACGTTGG
CCCGACGCCTTCTTCGACTCCGCCGGACTCCCCCTCGAATGGGACGGACG
CAGGAGGGGGAGACAGTGATGGAGGAGGGGATGTGGAGTACCAGCAGATG
GATAGGGGGGAGTTGATCTATATGgtgagcctaagttgcttcttatattc
gttggtgtggggtgtgtgttttttcagggccagtcagttttacacgcttg
tgaggagggcgaatgggttgggaccatgaaggggagggagggagggtggg
tggatgtatagcagatcaatgagaagagcgtaagctgagagtagacggag
acgtttggtgtgcatattgataagaagacacaaagaaattgagaggggga
gaaagggggagtggaagaaggtggaaaaaatgcaaaagctgtcatagCGG
AAGCAGCAGCGACAACAGCAGCAACAACAGCAGCACAACCACCACCACCG
CCATTACCACCTCTAA
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protein sequence of NO02G01250.1

>NO02G01250.1-protein ID=NO02G01250.1-protein|Name=NO02G01250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=397bp
MSSRQGYSALSEEHYVDVEAPAGAEGGSQVINSPAIPTATVAPSPIAASS
TTSSSSPPPGAPAASVNPDLFQYPIRILDTQGHEHSLDGDSPASTIGALK
LKVQTVAGVPPPQQRLIFAGRMLQDQQTLQSCNIQPGCVIHLFARPPPPP
PGAPGSIASIVGPGAPGANGGEGGVAIGPGTHLNPFGLPSSFGDPELLRS
THSVKLFSSCLVAICAMQLLLLSLQLVASWSMGGGTEGRGGEVPPIPGGD
DDNDGVSEEKGAEEIGAVFVLQVMMNILGLYVGLVGIRSANTLQLQSSKI
YLYGLLVVGTAWMATRIIWAINSVTSGYDVDVGPTPSSTPPDSPSNGTDA
GGGDSDGGGDVEYQQMDRGELIYMRKQQRQQQQQQQHNHHHRHYHL*
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Synonyms
Publications