NO02G01220, NO02G01220 (gene) Nannochloropsis oceanica

Overview
NameNO02G01220
Unique NameNO02G01220
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length462
Alignment locationchr2:374160..374621 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:374160..374621 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0007165signal transduction
Homology
[Close]
BLAST of NO02G01220 vs. NCBI_GenBank
Match: EWM30465.1 (hypothetical protein Naga_100013g83 [Nannochloropsis gaditana])

HSP 1 Score: 157.1 bits (396), Expect = 4.300e-35
Identity = 66/76 (86.84%), Postives = 70/76 (92.11%), Query Frame = 0 
Query:   78 TEKLCKNCKTYFNPIMNHDRACRYHPKHYSGDTKRKADWSDNADRFGTQKMYWCCGEEDEKAPGCKYDRHRSYDDE 154
            TE LCKNCKTY++P  NH+RACRYHPKHYSGDTKRKADWS +ADRF TQKMYWCCGEEDE APGCKYDRHRSYDDE
Sbjct:   66 TEMLCKNCKTYYDPSRNHERACRYHPKHYSGDTKRKADWSASADRFATQKMYWCCGEEDENAPGCKYDRHRSYDDE 141
[Close]
BLAST of NO02G01220 vs. NCBI_GenBank
Match: PSR87849.1 (Calcium-activated potassium channel subunit alpha-1 like [Actinidia chinensis var. chinensis])

HSP 1 Score: 84.7 bits (208), Expect = 2.700e-13
Identity = 42/87 (48.28%), Postives = 49/87 (56.32%), Query Frame = 0 
Query:   72 SPTPVNTEKLCKNCKTYFNPIMNHDRACRYHPKHYSGDTKRKAD-----WSDNADRFGTQKMYW-CCGEEDEKAPGCKYDRHRSYDD 153
            S  P    + CKNCKT F+P +NH RACRYH  H+ G+TKRK +      + N    GT   YW CCG ED   PGC    H SYDD
Sbjct:   56 SSKPTQALRTCKNCKTQFDPSVNHPRACRYHTAHFGGETKRKFESVHTGGTMNTPDSGTVLQYWHCCGSEDPFDPGCTAAPHSSYDD 142
[Close]
BLAST of NO02G01220 vs. NCBI_GenBank
Match: EOY04036.1 (Uncharacterized protein TCM_019291 [Theobroma cacao])

HSP 1 Score: 83.6 bits (205), Expect = 6.000e-13
Identity = 43/94 (45.74%), Postives = 51/94 (54.26%), Query Frame = 0 
Query:   73 PTPV--------NTEKLCKNCKTYFNPIMNHDRACRYHPKHYSGDTKRKAD-----WSDNADRFGTQKMYW-CCGEEDEKAPGCKYDRHRSYDD 153
            PTPV           K CKNCKT F+P++NH RACR+H  H+ G+TKRK +      + N    G    YW CCG ED   PGC    H SYDD
Sbjct:   42 PTPVLCTAKPSSKNPKTCKNCKTQFDPLLNHPRACRFHTAHFGGETKRKFESVYTGGTMNTPESGKVFQYWHCCGSEDPFDPGCTAAPHASYDD 135
[Close]
BLAST of NO02G01220 vs. NCBI_GenBank
Match: OMO55576.1 (hypothetical protein CCACVL1_27172 [Corchorus capsularis])

HSP 1 Score: 83.6 bits (205), Expect = 6.000e-13
Identity = 41/88 (46.59%), Postives = 52/88 (59.09%), Query Frame = 0 
Query:   71 SSPTPVNTEKLCKNCKTYFNPIMNHDRACRYHPKHYSGDTKRK-----ADWSDNADRFGTQKMYW-CCGEEDEKAPGCKYDRHRSYDD 153
            ++P+  N  K CKNCKT F+P++NH RACR+H  H+ G+TKRK     A  + +    G    YW CCG ED   PGC    H SYDD
Sbjct:   47 ATPSSSNHLKTCKNCKTQFDPLLNHPRACRFHTAHFGGETKRKFESVYAGGTMDTPDSGKVFQYWHCCGSEDPFDPGCTAAPHASYDD 134
[Close]
BLAST of NO02G01220 vs. NCBI_GenBank
Match: XP_021891405.1 (uncharacterized protein LOC110809788 [Carica papaya])

HSP 1 Score: 83.6 bits (205), Expect = 6.000e-13
Identity = 40/82 (48.78%), Postives = 49/82 (59.76%), Query Frame = 0 
Query:   77 NTEKLCKNCKTYFNPIMNHDRACRYHPKHYSGDTKRKAD-----WSDNADRFGTQKMYW-CCGEEDEKAPGCKYDRHRSYDD 153
            N  + CKNCKT F+P++NH RACR+H  HY G+TKRK +      + N+   G    YW CCG ED   PGC    H SYDD
Sbjct:   57 NALRTCKNCKTQFDPLLNHPRACRFHTAHYGGETKRKFESVYTGGTMNSPDSGKVFQYWHCCGSEDPFDPGCTAAPHSSYDD 138
[Close]
BLAST of NO02G01220 vs. NCBI_GenBank
Match: XP_019154870.1 (PREDICTED: uncharacterized protein LOC109151351 [Ipomoea nil])

HSP 1 Score: 83.2 bits (204), Expect = 7.800e-13
Identity = 40/81 (49.38%), Postives = 48/81 (59.26%), Query Frame = 0 
Query:   78 TEKLCKNCKTYFNPIMNHDRACRYHPKHYSGDTKRKAD-----WSDNADRFGTQKMYW-CCGEEDEKAPGCKYDRHRSYDD 153
            T + CKNCKT F+P++NH RACRYH  H+ G+TKRK +      + N    G    YW CCG ED   PGC    H SYDD
Sbjct:   61 TLRTCKNCKTQFDPLLNHPRACRYHTAHFGGETKRKFESVYTGGTMNTPNSGKILEYWHCCGSEDSFDPGCTAAPHASYDD 141
[Close]
BLAST of NO02G01220 vs. NCBI_GenBank
Match: XP_017975414.1 (PREDICTED: uncharacterized protein LOC18601944 [Theobroma cacao])

HSP 1 Score: 82.8 bits (203), Expect = 1.000e-12
Identity = 43/94 (45.74%), Postives = 51/94 (54.26%), Query Frame = 0 
Query:   73 PTPV--------NTEKLCKNCKTYFNPIMNHDRACRYHPKHYSGDTKRKAD-----WSDNADRFGTQKMYW-CCGEEDEKAPGCKYDRHRSYDD 153
            PTPV           K CKNCKT F+P++NH RACR+H  H+ G+TKRK +      + N    G    YW CCG ED   PGC    H SYDD
Sbjct:   42 PTPVLCTAKPSSKNLKTCKNCKTQFDPLLNHPRACRFHTAHFGGETKRKFESVYTGGTMNTPESGKVFQYWHCCGSEDPFDPGCTAAPHASYDD 135
[Close]
BLAST of NO02G01220 vs. NCBI_GenBank
Match: XP_012832555.1 (PREDICTED: uncharacterized protein LOC105953440 [Erythranthe guttata] >EYU41316.1 hypothetical protein MIMGU_mgv1a015699mg [Erythranthe guttata])

HSP 1 Score: 82.4 bits (202), Expect = 1.300e-12
Identity = 42/88 (47.73%), Postives = 50/88 (56.82%), Query Frame = 0 
Query:   74 TPVNTE---KLCKNCKTYFNPIMNHDRACRYHPKHYSGDTKRKAD-----WSDNADRFGTQKMYW-CCGEEDEKAPGCKYDRHRSYDD 153
            T + TE   + CKNCKT F+P +NH RACRYH  HY G+T+RK +      + N    G    YW CCG ED   PGC    H SYDD
Sbjct:   62 TQIQTETPHRTCKNCKTQFDPSLNHPRACRYHTAHYGGETRRKFESVYTGGTMNTPGSGKVVQYWHCCGSEDPFDPGCTAAPHSSYDD 149
[Close]
BLAST of NO02G01220 vs. NCBI_GenBank
Match: XP_021296492.1 (uncharacterized protein LOC110425792 [Herrania umbratica])

HSP 1 Score: 82.4 bits (202), Expect = 1.300e-12
Identity = 39/79 (49.37%), Postives = 47/79 (59.49%), Query Frame = 0 
Query:   80 KLCKNCKTYFNPIMNHDRACRYHPKHYSGDTKRKAD-----WSDNADRFGTQKMYW-CCGEEDEKAPGCKYDRHRSYDD 153
            K CKNCKT F+P++NH RACR+H  H+ G+TKRK +      + N    G    YW CCG ED   PGC    H SYDD
Sbjct:   57 KTCKNCKTQFDPLLNHPRACRFHTAHFGGETKRKFESVYTGGTMNTPESGKVFQYWHCCGSEDPFDPGCTAAPHASYDD 135
[Close]
BLAST of NO02G01220 vs. NCBI_GenBank
Match: XP_022770003.1 (uncharacterized protein LOC111313595 [Durio zibethinus] >XP_022770004.1 uncharacterized protein LOC111313595 [Durio zibethinus])

HSP 1 Score: 82.4 bits (202), Expect = 1.300e-12
Identity = 44/89 (49.44%), Postives = 51/89 (57.30%), Query Frame = 0 
Query:   71 SSPTPVNTEKLCKNCKTYFNPIMNHDRACRYHPKHYSGDTKRKAD------WSDNADRFGTQKMYW-CCGEEDEKAPGCKYDRHRSYDD 153
            + PT  N  K CKNCKT F+P+ NH RACR+HP H+ G+TKRK +        D  D  G    YW CCG ED   PGC    H SYDD
Sbjct:   49 AKPTTKNL-KTCKNCKTQFDPLHNHPRACRFHPAHFGGETKRKFESVYTGGTMDTPDS-GKVFQYWHCCGSEDPFDPGCTAAPHASYDD 135
The following BLAST results are available for this feature:
BLAST of NO02G01220 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM30465.14.300e-3586.84hypothetical protein Naga_100013g83 [Nannochlorops... [more]
PSR87849.12.700e-1348.28Calcium-activated potassium channel subunit alpha-... [more]
EOY04036.16.000e-1345.74Uncharacterized protein TCM_019291 [Theobroma caca... [more]
OMO55576.16.000e-1346.59hypothetical protein CCACVL1_27172 [Corchorus caps... [more]
XP_021891405.16.000e-1348.78uncharacterized protein LOC110809788 [Carica papay... [more]
XP_019154870.17.800e-1349.38PREDICTED: uncharacterized protein LOC109151351 [I... [more]
XP_017975414.11.000e-1245.74PREDICTED: uncharacterized protein LOC18601944 [Th... [more]
XP_012832555.11.300e-1247.73PREDICTED: uncharacterized protein LOC105953440 [E... [more]
XP_021296492.11.300e-1249.37uncharacterized protein LOC110425792 [Herrania umb... [more]
XP_022770003.11.300e-1249.44uncharacterized protein LOC111313595 [Durio zibeth... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR033ncniR033Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006737NSK006737Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G01220.1NO02G01220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|536207gene_703Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100013g83gene134Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G01220.1NO02G01220.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G01220 ID=NO02G01220|Name=NO02G01220|organism=Nannochloropsis oceanica|type=gene|length=462bp
ATGCCACAGCAATCCAAACGACTCGAAGTTGTCCCCCTCCTTCACCTCCT
CCTCAGTGTCCTCTTAGTACAGCCCTTCAATGCTTTGCAGATCCCGTTGG
GGCCAGTCCTTACCCCAAGTAGCTCGAACTTCCGCCTGCCCAGGGCCTGG
TCTTCCTTCTCCGCCGCCTCTTCGTCGTGGGCTCTCTCAAGCAGCATCGC
CACCGCCTCATCCTCCCCCACACCCGTCAACACGGAAAAGTTGTGCAAAA
ATTGTAAGACCTACTTTAACCCGATAATGAATCACGATCGCGCTTGTAGG
TATCACCCCAAGCACTATTCTGGGGACACGAAACGCAAGGCTGACTGGAG
CGACAACGCCGACCGATTTGGCACCCAGAAGATGTACTGGTGTTGTGGTG
AAGAAGACGAAAAGGCACCAGGATGCAAATATGATAGACATCGGAGCTAC
GATGATGAATGA
back to top

protein sequence of NO02G01220.1

>NO02G01220.1-protein ID=NO02G01220.1-protein|Name=NO02G01220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=154bp
MPQQSKRLEVVPLLHLLLSVLLVQPFNALQIPLGPVLTPSSSNFRLPRAW
SSFSAASSSWALSSSIATASSSPTPVNTEKLCKNCKTYFNPIMNHDRACR
YHPKHYSGDTKRKADWSDNADRFGTQKMYWCCGEEDEKAPGCKYDRHRSY
DDE*
back to top
Synonyms
Publications