NO02G00920, NO02G00920 (gene) Nannochloropsis oceanica

Overview
NameNO02G00920
Unique NameNO02G00920
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length876
Alignment locationchr2:293426..294301 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:293426..294301 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013865DUF1754_euk
Homology
BLAST of NO02G00920 vs. NCBI_GenBank
Match: EWM30555.1 (Protein of unknown function DUF1754, eukaryotic [Nannochloropsis gaditana])

HSP 1 Score: 115.2 bits (287), Expect = 1.400e-22
Identity = 93/121 (76.86%), Postives = 99/121 (81.82%), Query Frame = 0
Query:    1 MPIGGALKLKGMSINKD---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEEVPLALEKDDGLTETQRRHIARQKEREKNNIKNMVSKSHRERIDEFNQYLSVLTEHNDIPRVSAAGNG 119
            MP+GGALKLKG+   KD   XXXXXXXXXXXXXXXXXXXXXXXXX       +      EKDDGLTETQRRHIA+ KERE+ NIK +VSKSHRERIDEFNQYLSVLTEHNDIPRVSAAGNG
Sbjct:    1 MPVGGALKLKGLP-TKDXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGNESISDTSSFPSEKDDGLTETQRRHIAKLKERERQNIKKLVSKSHRERIDEFNQYLSVLTEHNDIPRVSAAGNG 120          
BLAST of NO02G00920 vs. NCBI_GenBank
Match: XP_024572879.1 (Conserved alpha-helical protein [Plasmopara halstedii] >CEG36510.1 Conserved alpha-helical protein [Plasmopara halstedii])

HSP 1 Score: 74.3 bits (181), Expect = 2.800e-10
Identity = 35/59 (59.32%), Postives = 46/59 (77.97%), Query Frame = 0
Query:   60 DGLTETQRRHIARQKEREKNNIKNMVSKSHRERIDEFNQYLSVLTEHNDIPRVSAAGNG 119
            D +T  QRRH   +K+RE+  I+ M SK++RERI+E NQ+L  LTEH+D+PRVSAAGNG
Sbjct:   54 DDMTPAQRRHAEHKKKREQEEIEKMASKTYRERIEELNQHLGSLTEHHDVPRVSAAGNG 112          
BLAST of NO02G00920 vs. NCBI_GenBank
Match: CBJ30524.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 70.9 bits (172), Expect = 3.100e-9
Identity = 37/62 (59.68%), Postives = 44/62 (70.97%), Query Frame = 0
Query:   57 EKDDGLTETQRRHIARQKEREKNNIKNMVSKSHRERIDEFNQYLSVLTEHNDIPRVSAAGNG 119
            E DD LT  QRR   +Q ERE   I+ MV ++HRERI+ FN  L+ +TEHNDIPR SAAGNG
Sbjct:  116 EVDDMLTPAQRRFRKKQLEREGKKIRGMVEQTHRERIENFNALLASMTEHNDIPRCSAAGNG 177          
BLAST of NO02G00920 vs. NCBI_GenBank
Match: CCA22448.1 (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 70.5 bits (171), Expect = 4.000e-9
Identity = 33/58 (56.90%), Postives = 45/58 (77.59%), Query Frame = 0
Query:   61 GLTETQRRHIARQKEREKNNIKNMVSKSHRERIDEFNQYLSVLTEHNDIPRVSAAGNG 119
            G+T+ Q +H   Q++RE + I  + SK++R+R+DE NQYL  LTEH+DIPRVSAAGNG
Sbjct:   71 GMTQAQIKHEEIQRKRENDEINKIASKTYRQRVDELNQYLGSLTEHHDIPRVSAAGNG 128          
BLAST of NO02G00920 vs. NCBI_GenBank
Match: GBG28874.1 (Protein FAM32A [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 70.5 bits (171), Expect = 4.000e-9
Identity = 35/58 (60.34%), Postives = 43/58 (74.14%), Query Frame = 0
Query:   61 GLTETQRRHIARQKEREKNNIKNMVSKSHRERIDEFNQYLSVLTEHNDIPRVSAAGNG 119
            GLT  QRR   +Q+ERE   IK M   +HRER+D FN+ LS L+EH+DIP+VSAAGNG
Sbjct:  306 GLTPAQRRFELKQREREAERIKEMTRMTHRERVDAFNEKLSKLSEHHDIPKVSAAGNG 363          
BLAST of NO02G00920 vs. NCBI_GenBank
Match: XP_008880462.1 (hypothetical protein H310_14388 [Aphanomyces invadans] >ETV90897.1 hypothetical protein H310_14388 [Aphanomyces invadans])

HSP 1 Score: 68.6 bits (166), Expect = 1.500e-8
Identity = 30/58 (51.72%), Postives = 47/58 (81.03%), Query Frame = 0
Query:   61 GLTETQRRHIARQKEREKNNIKNMVSKSHRERIDEFNQYLSVLTEHNDIPRVSAAGNG 119
            G+T  Q++H+  + +RE+ +IK   SK++RER+DE+++YL  L+EH+D+PRVSAAGNG
Sbjct:   58 GMTAAQQKHLKFKAKREEEDIKKQASKTYRERVDEYSKYLGNLSEHHDVPRVSAAGNG 115          
BLAST of NO02G00920 vs. NCBI_GenBank
Match: CCI39645.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 67.4 bits (163), Expect = 3.400e-8
Identity = 31/57 (54.39%), Postives = 43/57 (75.44%), Query Frame = 0
Query:   62 LTETQRRHIARQKEREKNNIKNMVSKSHRERIDEFNQYLSVLTEHNDIPRVSAAGNG 119
            +T+ QR+H   +++RE   I  + SK++R+R+DE N YL  LTEH+DIPRVSAAGNG
Sbjct:   55 MTQAQRKHEEIRRKRENEEINKIASKTYRQRVDELNHYLGSLTEHHDIPRVSAAGNG 111          
BLAST of NO02G00920 vs. NCBI_GenBank
Match: XP_012202653.1 (hypothetical protein SPRG_07911 [Saprolegnia parasitica CBS 223.65] >KDO26508.1 hypothetical protein SPRG_07911 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 67.4 bits (163), Expect = 3.400e-8
Identity = 29/58 (50.00%), Postives = 46/58 (79.31%), Query Frame = 0
Query:   61 GLTETQRRHIARQKEREKNNIKNMVSKSHRERIDEFNQYLSVLTEHNDIPRVSAAGNG 119
            G+T+ Q++H   + +RE+ +I+   SK++RER++E++ YL  LTEH+D+PRVSAAGNG
Sbjct:   67 GMTDAQKKHAKFKSKREEEDIRKQASKTYRERVEEYSTYLGNLTEHHDVPRVSAAGNG 124          
BLAST of NO02G00920 vs. NCBI_GenBank
Match: XP_009843866.1 (hypothetical protein H257_16944 [Aphanomyces astaci] >ETV66638.1 hypothetical protein H257_16944 [Aphanomyces astaci])

HSP 1 Score: 67.0 bits (162), Expect = 4.500e-8
Identity = 33/67 (49.25%), Postives = 49/67 (73.13%), Query Frame = 0
Query:   52 VPLALEKDDGLTETQRRHIARQKEREKNNIKNMVSKSHRERIDEFNQYLSVLTEHNDIPRVSAAGNG 119
            VP+A      +T  Q++H   + +RE+ +IK   SK++RER+DE++QYL  L+EH+D+PRVSAAGNG
Sbjct:   53 VPIA-----AMTPAQKKHQKFKAKREEEDIKKQASKTYRERVDEYSQYLGNLSEHHDVPRVSAAGNG 114          
BLAST of NO02G00920 vs. NCBI_GenBank
Match: XP_008613491.1 (hypothetical protein SDRG_09343 [Saprolegnia diclina VS20] >EQC32805.1 hypothetical protein SDRG_09343 [Saprolegnia diclina VS20])

HSP 1 Score: 66.2 bits (160), Expect = 7.600e-8
Identity = 29/57 (50.88%), Postives = 45/57 (78.95%), Query Frame = 0
Query:   62 LTETQRRHIARQKEREKNNIKNMVSKSHRERIDEFNQYLSVLTEHNDIPRVSAAGNG 119
            +TE Q++H   + +RE+ +I+   SK++RER++E++ YL  LTEH+D+PRVSAAGNG
Sbjct:   62 MTEAQKKHAKFKSKREEEDIRKQASKTYRERVEEYSTYLGNLTEHHDVPRVSAAGNG 118          
The following BLAST results are available for this feature:
BLAST of NO02G00920 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 13
Match NameE-valueIdentityDescription
EWM30555.11.400e-2276.86Protein of unknown function DUF1754, eukaryotic [N... [more]
XP_024572879.12.800e-1059.32Conserved alpha-helical protein [Plasmopara halste... [more]
CBJ30524.13.100e-959.68conserved unknown protein [Ectocarpus siliculosus][more]
CCA22448.14.000e-956.90conserved hypothetical protein [Albugo laibachii N... [more]
GBG28874.14.000e-960.34Protein FAM32A [Aurantiochytrium sp. FCC1311][more]
XP_008880462.11.500e-851.72hypothetical protein H310_14388 [Aphanomyces invad... [more]
CCI39645.13.400e-854.39unnamed protein product [Albugo candida][more]
XP_012202653.13.400e-850.00hypothetical protein SPRG_07911 [Saprolegnia paras... [more]
XP_009843866.14.500e-849.25hypothetical protein H257_16944 [Aphanomyces astac... [more]
XP_008613491.17.600e-850.88hypothetical protein SDRG_09343 [Saprolegnia dicli... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006691NSK006691Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G00920.1NO02G00920.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573730gene_669Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100033g29gene102Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G00920.1NO02G00920.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G00920 ID=NO02G00920|Name=NO02G00920|organism=Nannochloropsis oceanica|type=gene|length=876bp
TCCACAAGCTAACAATCCTTGCATGCACACCACAATCATAACACACAGGC
TGCAATCATGCCTATCGGCGGGGCGCTCAAGCTCAAAGGGATGTCTATCA
ACAAGGACAAgtaagtacctacataatccttccatgccctccatctcctt
ccatgatacattcatgccacatgtacgcagtctatgcgacagaaccacgg
ctgagtaagtgtttcacttgcccctaaagagcgtaccaatcgttgctgtg
gccacgtcggtttatctccctcctttctttagggaactcacatgctggat
caacccaccccaccattttccttccgcatacatcgcaccaacaccgcacc
acacacccgtccacgtcacagGAAGAAGAAAAAGAAACGTTCCCGCGAGG
AGAGTCCTGACGACGATGCAGTAGCCGCGACCAGCACGCATCACAAAGAT
GATGGCGAGGATGGGGAGGAGGTTCCACTTGCCTTGGAGAAGGACGACGG
ATTAACTGAGACGCAACGCCGACACATTGCCCGACAGAAGGAGCGGGAGA
AGAATAATATCAAGAATATGGTTAGCAAAAGCCATCGGGAGCGCATTGAC
GAGTTTAATCAGTACTTGTCTGTGTTGACGGAACACAATGACATTCCTCG
AGTGTCGGCGGCCGGGAACGGGTAGAAGGTGGAAGACTCATGAACACAGG
AATATGGAAGAGCTGAAGAGAGGGAGTATTTTTATGTGTTTGTACGTGTC
CATGTGGGTGTGTGTGCTTGTGAATACAGGGGATGAAAAAGAAGGAAGAA
GTTGCGTTGCGTTCTGAGGAGACATTTATGATAAACGAACAAATAAAGAA
GATATTAATTCAGTTTTTCTGTGTAA
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protein sequence of NO02G00920.1

>NO02G00920.1-protein ID=NO02G00920.1-protein|Name=NO02G00920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=119bp
MPIGGALKLKGMSINKDKKKKKKRSREESPDDDAVAATSTHHKDDGEDGE
EVPLALEKDDGLTETQRRHIARQKEREKNNIKNMVSKSHRERIDEFNQYL
SVLTEHNDIPRVSAAGNG*
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Synonyms
Publications