NO02G00620, NO02G00620 (gene) Nannochloropsis oceanica

Overview
NameNO02G00620
Unique NameNO02G00620
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2167
Alignment locationchr2:210306..212472 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:210306..212472 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO02G00620 vs. NCBI_GenBank
Match: EWM30554.1 (hypothetical protein Naga_100033g3 [Nannochloropsis gaditana])

HSP 1 Score: 125.6 bits (314), Expect = 3.000e-25
Identity = 58/80 (72.50%), Postives = 70/80 (87.50%), Query Frame = 0 
Query:   75 DLPEYAGVALFEKAESIEIKNLAGPDAPEMIINGMRTFHGTYEDPLGATLIVDDSQIDHTCPRVNTGKRKRGRPRSESLE 155
            DLPEYAGVALFE+AESIEIKN+AGP APE+++NG+R F G YEDPLG++LIV+D +IDHTC  +  G RK+GRPRSESLE
Sbjct:   86 DLPEYAGVALFEEAESIEIKNIAGPGAPELVVNGVRNFKGHYEDPLGSSLIVNDHRIDHTC--IRQGARKKGRPRSESLE 163
The following BLAST results are available for this feature:
BLAST of NO02G00620 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30554.13.000e-2572.50hypothetical protein Naga_100033g3 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G00620.1NO02G00620.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G00620.1NO02G00620.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G00620 ID=NO02G00620|Name=NO02G00620|organism=Nannochloropsis oceanica|type=gene|length=2167bp
GGGGGGGGGTCCGCTACCGTATTTGTTTTTAACCTTTCTTCCTTCATCTC
AATTCTTCTCATTGGAAGGAATGCTATAGTTAAGAACATTGCTGGTATTG
CCCCGGGGCGACGCTTGGTGGAAAGCATAACATTTTTTCGTTATGATGAA
TGGTGATGAAAAATAAGCAATGAGAGAGGTATGTATGCCGCACTTTCTCC
CAGGGCTAAATGTCTTGTCTGCACATTCCAAAGAGCAGGGGCAAGGAAAT
GGTAAAATAGACAAGGAAGGGGAAAACAAAACAGGGAAAGATGGCCGTAA
GAGCAACAAGGGGGAGCACAAGAGGTGCCGATGTGGCCAAGCGACGGATC
AGCCACCATAGGCGGCGAGTTGTAAGGTGCGCTGGTTGCTATTGCTTCAT
CCGGGCCCTCGTTATACTCGAAGAAACGTATACCCTCGCATATGAACACA
TATCCTCTCTTTCTAAGAAGCGTTGAATCTCATCAATTGTGCTATTACCT
CTTCTCACTTGATTGCTGCTGCTGACTCTCCCTCACGACAGCTACGCTTT
GAGCTCTTCGTGTTCTGACTGGCTGGTTGAGCGGTTGGTCATACTGCAAT
TATTATTATTATTATATAAAACACACATCTCCTCCTACTCGCCGTATAAC
CGCCAAACGTCTACCTCCCCACCCTCACCTCAAATCCTCCCTTCTCTTTT
TCTTCCCTCTCCTACACATCTCATGGGGTAAAGCCACCACGGATAGGCAT
GGAGGCCATCATAGAGATGCAGCCTCCAGATAACTCGTCAGTTGAGGGGG
AAGAACGACAGCAAGAGCAGCAGGAGGTGCAAAGAGGGAAAATCTTGAGC
GTTGGACAAGAAGAGGAGGACATGGCCGAAGACGCAGACGGGCGAGAAAT
TGACGAGGATGACGAGAATAATGATGGTGATTGCGATGATGAGGAAGAGG
AGGAGGTCCTAGTGTTGGTGGACTTGCCCGAATATGCAGGCGTGGCCTTG
TTCGAAAAAGCGGAGAGCATCGAGATCAAGgtaaagggacggaagataga
aaggggaggaggaggaaaacaggaaaacgggaaagatcgtttgtagacta
tgtcattggcaactccgtaactgatcgtctttctcgtttacctacatttc
tccacgccgatgccttcatttatacctcccatcctctttcttcttctcac
gactccctttccttcctctccctctctccctccctcccgcccaagAATCT
GGCCGGACCCGACGCCCCCGAGATGATCATAAACGGTATGCGCACGTTTC
ATGGGACGTACGAAGACCCTTTGGGCGCGACTTTGATCGTGGACGACTCC
CAGATTGACCATACCTGTCCGAGGGTGAACACGGGGAAGAGGAAAAGGGG
CCGCCCTCGGAGTGAGAGTTTGGAAATGGCAGCAGCAGCTGTGGCAGCTG
CAGCAGCAGCAGGAGGAGGAAAAGGAGGAGAAGGAGGAAGAGCAGGAGGA
GCAGGAGGGACATCGGCGAAGAAGGAGGAGGTGGGGAAGGACGGGAAGGC
GGACGGGGACCTCGAGCAGGAGGAGCCGGAGGGTAGACAAGAAGGGGAGG
GAGGGAGGGAGGGAGGGCAACCACCGCGAGTGTTATCAATAACGACGAAG
CTGTTGACGTTTATTGAGAAGAATAAAGGGGGATTTATGCGGTCGGTGGA
GGAGGAGGTGCTGGCAGATGCTTTGGCAGCGTCACGTACACGGGCGGAAG
AGACGAGGGGGGGGAGGGAAGGGGAACAGCGAAGGGAGAGAGGAGGCGAA
GAGGAGGATGAGGAGGAGGATGAGGAGGAGGATGAGGAGGAAGAGGAAGA
GGAAGAGGACGAAGAGGAGGACGAAGAGGAGGACGAAGAGGAGGACGAAG
AGGAGGACGAGGATGGAGAGGGAGGGGAGGAGGACGAGGAAGAGCGTCAG
GGAGTGTAGAGGACGGGGTTTGAGGACCCTCGAAGTTCACGGGCTCTTTG
AACGAAAACAATTGTCGATATTGGAACAAGGCAAACGCCCGCAAATGCCC
AGCGCCTCCATCATCCAAGACCTGTGAAACGTGTGATGTATAGATGTGAT
AAATAAAACACCGAGGAAAGAAGAGAAAGCAAAAGCGGTGCTTTCCCGTG
TGAAGGGAGAGGTTGAG
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protein sequence of NO02G00620.1

>NO02G00620.1-protein ID=NO02G00620.1-protein|Name=NO02G00620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=332bp
MEAIIEMQPPDNSSVEGEERQQEQQEVQRGKILSVGQEEEDMAEDADGRE
IDEDDENNDGDCDDEEEEEVLVLVDLPEYAGVALFEKAESIEIKNLAGPD
APEMIINGMRTFHGTYEDPLGATLIVDDSQIDHTCPRVNTGKRKRGRPRS
ESLEMAAAAVAAAAAAGGGKGGEGGRAGGAGGTSAKKEEVGKDGKADGDL
EQEEPEGRQEGEGGREGGQPPRVLSITTKLLTFIEKNKGGFMRSVEEEVL
ADALAASRTRAEETRGGREGEQRRERGGEEEDEEEDEEEDEEEEEEEEDE
EEDEEEDEEEDEEEDEDGEGGEEDEEERQGV*
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Synonyms
Publications