NO02G00550, NO02G00550 (gene) Nannochloropsis oceanica

Overview
NameNO02G00550
Unique NameNO02G00550
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2852
Alignment locationchr2:190814..193665 -

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Properties
Property NameValue
DescriptionSANT/Myb domain protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:190814..193665 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR009057Homeodomain-like
IPR017930Myb_dom
IPR001005SANT/Myb
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Homology
BLAST of NO02G00550 vs. NCBI_GenBank
Match: EWM30605.1 (SANT/Myb domain protein [Nannochloropsis gaditana])

HSP 1 Score: 260.4 bits (664), Expect = 1.600e-65
Identity = 149/226 (65.93%), Postives = 158/226 (69.91%), Query Frame = 0
Query:   74 APFVAPGEVDVVPAPLILSQLPCMPSK--GPTSTIATRKSSILSGGTGNQGRWTEAEHELFLEGIDTYGKGAWKVISEKVVKSRSAEQVRIHAQKYFLRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADGEGKTKAGGKSSKEGHWTDEEHELFLKCWEKYGKSWKKLSEIITTRTNEQIRTHAQKYFAKLRELRERGYSGAYYMDGTRHLTKTFLG 298
            APFVAPGE  + PAPLIL   P  PS    P      RKSSILSGG GNQGRWTEAEH+LFLEG+  +GKGAWK+ISEKVV++RSAEQVRIHAQKYFLRQ                               XXXXX              KEGHWTDEEHELFL+CWE+YGKSWKKLSEII TRTNEQIRTHAQKYFAKLRELRERGY GAYYMDGTRHLTKTFLG
Sbjct:   72 APFVAPGE--LAPAPLILPLPPLPPSTNISPDPIPPARKSSILSGGMGNQGRWTEAEHDLFLEGLREHGKGAWKLISEKVVRTRSAEQVRIHAQKYFLRQ------------SKQEKKKNAANKGAMAEIEXXXXXXXXXXXXXXXXXXXKEGHWTDEEHELFLRCWEQYGKSWKKLSEIIGTRTNEQIRTHAQKYFAKLRELRERGYEGAYYMDGTRHLTKTFLG 283          
BLAST of NO02G00550 vs. NCBI_GenBank
Match: EWM24966.1 (SANT/Myb domain protein [Nannochloropsis gaditana])

HSP 1 Score: 156.8 bits (395), Expect = 2.500e-34
Identity = 81/173 (46.82%), Postives = 103/173 (59.54%), Query Frame = 0
Query:  124 WTEAEHELFLEGIDTYGKGAWKVISEKVVKSRSAEQVRIHAQKYFLRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADGEGKTKAGGKSSKEGHWTDEEHELFLKCWEKYGKSWKKLSEIITTRTNEQIRTHAQKYFAKLRELRERGYSGAYYMDGTRHLTKTFL 297
            WT  EH  FLEG+  YG+ +W+ IS  ++ +R+ E+++ +A  Y + Q                                    A  +GK  A    +KEGHWTDEEHE FLKCW KYGKSWKK+S+++ TR+NEQIRTHAQKYF KL +LR  GY G+Y MDGTRHLTKTFL
Sbjct:   83 WTTEEHARFLEGLKQYGR-SWESISTLLLPTRTPEEIKNYASLYLVNQ---------------------------PKDLTPPRTASTKGKDGASAARAKEGHWTDEEHEFFLKCWAKYGKSWKKISQVMKTRSNEQIRTHAQKYFTKLDQLRTCGYEGSYTMDGTRHLTKTFL 227          
BLAST of NO02G00550 vs. NCBI_GenBank
Match: XP_004239479.1 (PREDICTED: transcription factor DIVARICATA-like [Solanum lycopersicum])

HSP 1 Score: 85.9 bits (211), Expect = 5.500e-13
Identity = 53/154 (34.42%), Postives = 71/154 (46.10%), Query Frame = 0
Query:  123 RWTEAEHELFLEGIDTYGKGAWKVISEKVVKSRSAEQVRIHAQKYFLRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADGEGKTKAGGKSSKEGHWTDEEHELFLKCWEKYGKSWKKLS-EIITTRTNEQIRTHAQKYFAKLRELR 276
            RW+E EH  FL G++  G G W  I+++ V SR+  Q+  HAQKYF  Q                                        G +       +EG WT+EEHE FL   EK G++W ++S E + +RT  QI +HAQKYF  LR  R
Sbjct:   26 RWSEEEHRAFLCGLEKLGTGNWSEIAKQFVPSRTRTQISSHAQKYFAWQKTRNDKAAKSTSNVELSSSTSGKEERPLSPMPISYNDSNNGDSVNLLSRKQEGKWTEEEHEAFLIGMEKVGRNWTRVSKEFVLSRTPTQITSHAQKYFEGLRNDR 179          
BLAST of NO02G00550 vs. NCBI_GenBank
Match: XP_015075285.1 (PREDICTED: transcription factor DIVARICATA-like [Solanum pennellii])

HSP 1 Score: 80.9 bits (198), Expect = 1.800e-11
Identity = 53/161 (32.92%), Postives = 71/161 (44.10%), Query Frame = 0
Query:  123 RWTEAEHELFLEGIDTYGKGAWKVISEKVVKSRSAEQVRIHAQKYFLRQ-------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADGEGKTKAGGKSSKEGHWTDEEHELFLKCWEKYGKSWKKLS-EIITTRTNEQIRTHAQKYFAKLRELR 276
            RW+E EH  FL G++  G G W  I+++ V SR+  Q+  HAQKYF  Q                                               G +       +EG WT+EEHE FL   EK G++W ++S E + +RT  QI +HAQKYF  LR  R
Sbjct:   33 RWSEEEHRAFLCGLEELGTGNWSEIAKQFVPSRTRTQISSHAQKYFAWQKAKNDKAAKSTSNVDSSSPTSGKEDSNEERPLSPMPISYSVPNVSNNGDSVNLLSRKQEGKWTEEEHEAFLIGMEKVGRNWTRVSKEFVQSRTPTQITSHAQKYFESLRNNR 193          
BLAST of NO02G00550 vs. NCBI_GenBank
Match: EWM29405.1 (SANT/Myb domain protein [Nannochloropsis gaditana])

HSP 1 Score: 77.4 bits (189), Expect = 1.900e-10
Identity = 39/77 (50.65%), Postives = 52/77 (67.53%), Query Frame = 0
Query:  224 GHWTDEEHELFLKCWEKYGKSWKKLSEIITTRTNEQIRTHAQKYFAKLRELRERGYSGAYYMDGTRHLTKTFLGVAG 301
            G W +EEH LFLK  E YGKSWKK+S+I+ TRT  QIRTHAQKY  K+ + ++ G +G   M+G + +T +  G  G
Sbjct:  160 GRWNEEEHLLFLKGLEIYGKSWKKISQIVKTRTVVQIRTHAQKYLIKIEKAKKLGLTGTVMMNG-KAITSSTKGKGG 235          
BLAST of NO02G00550 vs. NCBI_GenBank
Match: XP_002184266.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC44444.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 77.0 bits (188), Expect = 2.500e-10
Identity = 38/80 (47.50%), Postives = 48/80 (60.00%), Query Frame = 0
Query:  208 ADGEGKTKAGGKSSKEGHWTDEEHELFLKCWEKYGKSWKKLSEIITTRTNEQIRTHAQKYFAKLRELRERGYSGAYYMDG 288
            A   G    G      G WT EEH LFL+  E++GK WKK++ +I +RT  QIRTHAQKYF KL + R+ G  G   M+G
Sbjct:  102 ATASGSASQGSHGENTGRWTAEEHRLFLQGLEQHGKGWKKIASLIKSRTVVQIRTHAQKYFQKLAKARQNGEEGDVAMEG 181          
BLAST of NO02G00550 vs. NCBI_GenBank
Match: XP_002184267.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC44445.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 77.0 bits (188), Expect = 2.500e-10
Identity = 38/80 (47.50%), Postives = 48/80 (60.00%), Query Frame = 0
Query:  208 ADGEGKTKAGGKSSKEGHWTDEEHELFLKCWEKYGKSWKKLSEIITTRTNEQIRTHAQKYFAKLRELRERGYSGAYYMDG 288
            A   G    G      G WT EEH LFL+  E++GK WKK++ +I +RT  QIRTHAQKYF KL + R+ G  G   M+G
Sbjct:  102 ATASGSASQGSHGENTGRWTAEEHRLFLQGLEQHGKGWKKIASLIKSRTVVQIRTHAQKYFQKLAKARQNGEEGDVAMEG 181          
BLAST of NO02G00550 vs. NCBI_GenBank
Match: EWM30452.1 (SANT/Myb domain protein [Nannochloropsis gaditana])

HSP 1 Score: 75.1 bits (183), Expect = 9.700e-10
Identity = 40/75 (53.33%), Postives = 53/75 (70.67%), Query Frame = 0
Query:  218 GKSSKE--GHWTDEEHELFLKCWEKYGKSWKKLSEIITTRTNEQIRTHAQKYFAKLRELRERGYSGAYY-MDGTR 290
            G++ +E  G WT EEH LFLK  E +GK WKK++++I TRT  QIRTHAQKYF KL + ++ G+ G    M+GTR
Sbjct:   93 GETGRENTGRWTCEEHVLFLKGLEMHGKGWKKIAKLIKTRTVVQIRTHAQKYFQKLAKAKKNGHHGDMLGMEGTR 167          
BLAST of NO02G00550 vs. NCBI_GenBank
Match: GAX24276.1 (protein MYSM1 [Fistulifera solaris])

HSP 1 Score: 74.3 bits (181), Expect = 1.600e-9
Identity = 35/64 (54.69%), Postives = 45/64 (70.31%), Query Frame = 0
Query:  224 GHWTDEEHELFLKCWEKYGKSWKKLSEIITTRTNEQIRTHAQKYFAKLRELRERGYSGAYYMDG 288
            G WT EEH LFL+  E++GK WKK++ +I +RT  QIRTHAQKYF KL + R+ G  G   M+G
Sbjct:   99 GRWTAEEHRLFLQGLEQHGKGWKKIASLIKSRTVVQIRTHAQKYFQKLAKARQNGEEGDITMEG 162          
BLAST of NO02G00550 vs. NCBI_GenBank
Match: XP_008863052.1 (hypothetical protein H310_01647 [Aphanomyces invadans] >ETW09247.1 hypothetical protein H310_01647 [Aphanomyces invadans])

HSP 1 Score: 73.9 bits (180), Expect = 2.200e-9
Identity = 36/78 (46.15%), Postives = 49/78 (62.82%), Query Frame = 0
Query:  216 AGGKSSKEGHWTDEEHELFLKCWEKYGKSWKKLSEIITTRTNEQIRTHAQKYFAKLRELRERGYSGAYYMDGTRHLTK 294
            + G+    G WT +EHELFL+   +YGKSWK +S ++ TRT  QIRTHAQKY   L++      +G  Y+ G RHL +
Sbjct:  141 SSGEPQTTGRWTKQEHELFLEGLRRYGKSWKSISNLVVTRTLVQIRTHAQKY---LQKQSRSSKAGLQYLSGPRHLPR 215          
The following BLAST results are available for this feature:
BLAST of NO02G00550 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM30605.11.600e-6565.93SANT/Myb domain protein [Nannochloropsis gaditana][more]
EWM24966.12.500e-3446.82SANT/Myb domain protein [Nannochloropsis gaditana][more]
XP_004239479.15.500e-1334.42PREDICTED: transcription factor DIVARICATA-like [S... [more]
XP_015075285.11.800e-1132.92PREDICTED: transcription factor DIVARICATA-like [S... [more]
EWM29405.11.900e-1050.65SANT/Myb domain protein [Nannochloropsis gaditana][more]
XP_002184266.12.500e-1047.50predicted protein [Phaeodactylum tricornutum CCAP ... [more]
XP_002184267.12.500e-1047.50predicted protein [Phaeodactylum tricornutum CCAP ... [more]
EWM30452.19.700e-1053.33SANT/Myb domain protein [Nannochloropsis gaditana][more]
GAX24276.11.600e-954.69protein MYSM1 [Fistulifera solaris][more]
XP_008863052.12.200e-946.15hypothetical protein H310_01647 [Aphanomyces invad... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006643NSK006643Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G00550.1NO02G00550.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|138043gene_628Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100129g11gene65Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G00550.1NO02G00550.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G00550 ID=NO02G00550|Name=NO02G00550|organism=Nannochloropsis oceanica|type=gene|length=2852bp
AAATTGACATGCACCAAGCACGCACATTCCTTTTCCTTCTCGTCTACGAC
AGTTCCAAAAAAGGGATAACGATGAGTGCACACTCGCACTCGCAGCCACA
GCTTGGAAACACCATTGCACAGCCACTCGACCCAGCCTGCTTTTGTTTTA
AGACGAGAACATCTTGTGCACAAGGAAACAAAGATGCCCAGTCAGGGGCT
TTCTTAAATTGCTTAGAAAGGCGTCGAAACTAGAAGATCGAAAGGCGTGC
GTGCGGACGAGACAACAATGAAGTAAAAAGAGGGCGAGCCGGCACGGTCC
GTGCTTCTAATTTGCCAGATCATTCCCTCCTGCGCCCTACCAAGCGTCCC
CGACACGCCCTCCCTTCCCATTCAAACAGTGCCGTATTGTGGCAGACGGA
CGTAGGAGTGGGAAGACTCCTGTAGTCCACTGACAAACCTGGGCAACATC
GTCTGTGCGGCAAGGACGAAGACGAAGAAATCTTGGGCAGCTCGGACCTG
ACGATGTACTTGGCTTACAATACACCACCAACCATACGCCACACTACACA
CAGGTCATACCACTGTGTATCCTAGTCACTCTCGCATAAGCTTGTCAAGT
CGCCGCCGCTTCTCAACGAGTATTTTTTTACCAAGCCGACCCACGAGAGG
AAAAAAGAGAAGGCTCGTTTTCTTCGGAGCACCTCCTGCTCCACCACCGC
CACTGCGACAAAGCAAGCACCACCACCACGCGAACAATACAACATACGGA
GCATGGCTGATATTTCTGTTACCCCTATAGAAGACGCCGTCGAAACTGTG
GCCCTTTCCCCCATGCCTGTGATCGAGCAGGAACAAGAACACCAGCAGCT
GAAGCACGAGGCTCCCGATCAAGAAGGACTGCAGCAGCAGGAAGACCATC
AGCACCAAGTGCACCAGCAAGAACAAGAGCAACATCAGCCGAAGATAGAT
GTGCACGAACCCCCACAATCCGCGCCGTTCGTGGCTCCCGGTGAGGTGGA
CGTGGTGCCTGCGCCTCTGATCCTCTCGCAGCTCCCATGCATGCCTTCCA
AAGGCCCCACCTCGACTATTGCCACCAGGAAAAGCAGCATTTTAAGTGGC
GGCACAGGAAACCAAGGCCGATGGACAGAAGCAGAACATGAGTTGTTCTT
GGAGGGCATTGATACGTATGGGAAGGGGGCGTGGAAGGTGATTAGTGAGA
AGGTTGTCAAGTCCCGGAGTGCGGAGCAGGTGAGGATACACGCGCAGAAG
TATTTCCTACGGCAGACAAAGCAGCAGAGCAAGAAGAAAAATGACGATGT
CGCTGGTAGTTGTACTTTCAGGGGGGGAGGAGGGGCAGCGGGTGGGGCAG
GAGGAGGAGGGGAGGGTGGAGTCGCGGATGGAGAGGGGAAGACCAAGGCG
GGAGGGAAGAGCAGCAAGGAAGGGCATTGGACAGACGAGGAGCACGAACT
ATTCTTGAAGTGCTGGGAAAAGTACGGCAAAAGCTGGAAGAAATTAAGTG
AGATCATAACGACGCGGACGAACGAACAAATCCGGACCCATGCCCAGAAA
TATTTTGCGAAATTGCGCGAACTGAGAGAGAGGGGGTACTCTGGTGCCTA
TTACATGGACGGCACGAGGCATTTGACAAAGACCTTTTTGGGTGTTGCCG
GTGGTGGTGGTGGGGGTCGGGGCGGGGCTGCACATGGGCCGGTGGCGGGC
GGGGGGCGGGGGGGAGGGAGGGGAGGGAGAAGAGGGGGCAGAGGGGGAGG
AGGGGGTAAGCCGAGAGTGAGGGTGTGGGGAGGAAGAGGGGGTGGGAGGA
AAGGGAGAGAAAGCGAGAGTGATGAGGAGGAAGGCATGATGGAGGGAGGT
GCAGAGGAGGAGGAAGAAGATGAGGAGGAGGACTTCGGGGCGGTGTATAT
GGAGGGGGAGGGCGAGGACGAGGACGAGGACGAGGACGAGGACGTGATGG
ACGAAAGCGAGGATGAGGAACACGACTATGATGACCAAGGTAGAGGGTGT
TTGAGAGGGAGTGATCGGAGTGTGCGGAACACGAGCACTAGGAAACGGGG
GACGAAGCGTCGCCGAGTGGCCGGGGGAGGGGAGGAAGAAGGCAGCATCC
CGGCCGTTTCGGGTAACGGTCGGCGACGAGGTGGAAGGCGGGCAGACTCT
CCTACCTCTCCCTCCGCATCTTCCTCTATCTCCTTGCCACGCGGAACGGC
AGCAACGACAGCAGCAGCGTCGGCAGCGGCAGCAGCAGCAGCAGCAGCAG
CAGCGGCCGCAGTAGGGGGAGCAGGTCCCGCGGACAAAGGGAGAAATGGT
GGGAAAAAGGGAAGGCGGAAGGGGGCCTTGCTGTCACAGAATACAGAGAT
GGAGGCCGCCAAGTCTCTGATGAGCATCATTGCCGCGGCGGAAGAGGACG
AGGATGATGAAGGGGGGGAGGGGGGGAAGGAGGGAGGGGCGGACAGGAAA
GACTGTGGGCCGACCCGACGAGAGGAGGGAGAGAAGGAGGGAGAGGTGGC
ATCGGTAGTTTCTGAGGCTGAGGGAGACGGGGGAATGGTGTCGTCCCCGA
TGGGGGAGGACATGTTCGTTCCTCCTCCTTTGTTGAATGGAGAGGAGGTT
GAGATTGCTGTGTGTGCCATATCTCAGGTTTCGCCTCCCTTGGTCCAGCA
GCAGCAGCAGCAGCAGCAGCAGCTGCAGTCTTCATTGGATTCGCCTCCTG
CGGTGCAACAGCAGCAACCGCAACAGCAACAGCATGAGAAGGAAGAAAAG
GGAGGGGTAGAGGTAGAGGTGGAGGAAGGGGGGGGAGGGGTAACGGCAGA
AGCGGCGGGGCTGGCGGGGATGGCCTCGCCCGGGGATATGATAGAGGTGT
AA
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protein sequence of NO02G00550.1

>NO02G00550.1-protein ID=NO02G00550.1-protein|Name=NO02G00550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=700bp
MADISVTPIEDAVETVALSPMPVIEQEQEHQQLKHEAPDQEGLQQQEDHQ
HQVHQQEQEQHQPKIDVHEPPQSAPFVAPGEVDVVPAPLILSQLPCMPSK
GPTSTIATRKSSILSGGTGNQGRWTEAEHELFLEGIDTYGKGAWKVISEK
VVKSRSAEQVRIHAQKYFLRQTKQQSKKKNDDVAGSCTFRGGGGAAGGAG
GGGEGGVADGEGKTKAGGKSSKEGHWTDEEHELFLKCWEKYGKSWKKLSE
IITTRTNEQIRTHAQKYFAKLRELRERGYSGAYYMDGTRHLTKTFLGVAG
GGGGGRGGAAHGPVAGGGRGGGRGGRRGGRGGGGGKPRVRVWGGRGGGRK
GRESESDEEEGMMEGGAEEEEEDEEEDFGAVYMEGEGEDEDEDEDEDVMD
ESEDEEHDYDDQGRGCLRGSDRSVRNTSTRKRGTKRRRVAGGGEEEGSIP
AVSGNGRRRGGRRADSPTSPSASSSISLPRGTAATTAAASAAAAAAAAAA
AAAVGGAGPADKGRNGGKKGRRKGALLSQNTEMEAAKSLMSIIAAAEEDE
DDEGGEGGKEGGADRKDCGPTRREEGEKEGEVASVVSEAEGDGGMVSSPM
GEDMFVPPPLLNGEEVEIAVCAISQVSPPLVQQQQQQQQQLQSSLDSPPA
VQQQQPQQQQHEKEEKGGVEVEVEEGGGGVTAEAAGLAGMASPGDMIEV*
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Synonyms
Publications