NO02G00550, NO02G00550 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO02G00550 vs. NCBI_GenBank
Match: EWM30605.1 (SANT/Myb domain protein [Nannochloropsis gaditana]) HSP 1 Score: 260.4 bits (664), Expect = 1.600e-65 Identity = 149/226 (65.93%), Postives = 158/226 (69.91%), Query Frame = 0 Query: 74 APFVAPGEVDVVPAPLILSQLPCMPSK--GPTSTIATRKSSILSGGTGNQGRWTEAEHELFLEGIDTYGKGAWKVISEKVVKSRSAEQVRIHAQKYFLRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADGEGKTKAGGKSSKEGHWTDEEHELFLKCWEKYGKSWKKLSEIITTRTNEQIRTHAQKYFAKLRELRERGYSGAYYMDGTRHLTKTFLG 298 APFVAPGE + PAPLIL P PS P RKSSILSGG GNQGRWTEAEH+LFLEG+ +GKGAWK+ISEKVV++RSAEQVRIHAQKYFLRQ XXXXX KEGHWTDEEHELFL+CWE+YGKSWKKLSEII TRTNEQIRTHAQKYFAKLRELRERGY GAYYMDGTRHLTKTFLG Sbjct: 72 APFVAPGE--LAPAPLILPLPPLPPSTNISPDPIPPARKSSILSGGMGNQGRWTEAEHDLFLEGLREHGKGAWKLISEKVVRTRSAEQVRIHAQKYFLRQ------------SKQEKKKNAANKGAMAEIEXXXXXXXXXXXXXXXXXXXKEGHWTDEEHELFLRCWEQYGKSWKKLSEIIGTRTNEQIRTHAQKYFAKLRELRERGYEGAYYMDGTRHLTKTFLG 283
BLAST of NO02G00550 vs. NCBI_GenBank
Match: EWM24966.1 (SANT/Myb domain protein [Nannochloropsis gaditana]) HSP 1 Score: 156.8 bits (395), Expect = 2.500e-34 Identity = 81/173 (46.82%), Postives = 103/173 (59.54%), Query Frame = 0 Query: 124 WTEAEHELFLEGIDTYGKGAWKVISEKVVKSRSAEQVRIHAQKYFLRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADGEGKTKAGGKSSKEGHWTDEEHELFLKCWEKYGKSWKKLSEIITTRTNEQIRTHAQKYFAKLRELRERGYSGAYYMDGTRHLTKTFL 297 WT EH FLEG+ YG+ +W+ IS ++ +R+ E+++ +A Y + Q A +GK A +KEGHWTDEEHE FLKCW KYGKSWKK+S+++ TR+NEQIRTHAQKYF KL +LR GY G+Y MDGTRHLTKTFL Sbjct: 83 WTTEEHARFLEGLKQYGR-SWESISTLLLPTRTPEEIKNYASLYLVNQ---------------------------PKDLTPPRTASTKGKDGASAARAKEGHWTDEEHEFFLKCWAKYGKSWKKISQVMKTRSNEQIRTHAQKYFTKLDQLRTCGYEGSYTMDGTRHLTKTFL 227
BLAST of NO02G00550 vs. NCBI_GenBank
Match: XP_004239479.1 (PREDICTED: transcription factor DIVARICATA-like [Solanum lycopersicum]) HSP 1 Score: 85.9 bits (211), Expect = 5.500e-13 Identity = 53/154 (34.42%), Postives = 71/154 (46.10%), Query Frame = 0 Query: 123 RWTEAEHELFLEGIDTYGKGAWKVISEKVVKSRSAEQVRIHAQKYFLRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADGEGKTKAGGKSSKEGHWTDEEHELFLKCWEKYGKSWKKLS-EIITTRTNEQIRTHAQKYFAKLRELR 276 RW+E EH FL G++ G G W I+++ V SR+ Q+ HAQKYF Q G + +EG WT+EEHE FL EK G++W ++S E + +RT QI +HAQKYF LR R Sbjct: 26 RWSEEEHRAFLCGLEKLGTGNWSEIAKQFVPSRTRTQISSHAQKYFAWQKTRNDKAAKSTSNVELSSSTSGKEERPLSPMPISYNDSNNGDSVNLLSRKQEGKWTEEEHEAFLIGMEKVGRNWTRVSKEFVLSRTPTQITSHAQKYFEGLRNDR 179
BLAST of NO02G00550 vs. NCBI_GenBank
Match: XP_015075285.1 (PREDICTED: transcription factor DIVARICATA-like [Solanum pennellii]) HSP 1 Score: 80.9 bits (198), Expect = 1.800e-11 Identity = 53/161 (32.92%), Postives = 71/161 (44.10%), Query Frame = 0 Query: 123 RWTEAEHELFLEGIDTYGKGAWKVISEKVVKSRSAEQVRIHAQKYFLRQ-------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADGEGKTKAGGKSSKEGHWTDEEHELFLKCWEKYGKSWKKLS-EIITTRTNEQIRTHAQKYFAKLRELR 276 RW+E EH FL G++ G G W I+++ V SR+ Q+ HAQKYF Q G + +EG WT+EEHE FL EK G++W ++S E + +RT QI +HAQKYF LR R Sbjct: 33 RWSEEEHRAFLCGLEELGTGNWSEIAKQFVPSRTRTQISSHAQKYFAWQKAKNDKAAKSTSNVDSSSPTSGKEDSNEERPLSPMPISYSVPNVSNNGDSVNLLSRKQEGKWTEEEHEAFLIGMEKVGRNWTRVSKEFVQSRTPTQITSHAQKYFESLRNNR 193
BLAST of NO02G00550 vs. NCBI_GenBank
Match: EWM29405.1 (SANT/Myb domain protein [Nannochloropsis gaditana]) HSP 1 Score: 77.4 bits (189), Expect = 1.900e-10 Identity = 39/77 (50.65%), Postives = 52/77 (67.53%), Query Frame = 0 Query: 224 GHWTDEEHELFLKCWEKYGKSWKKLSEIITTRTNEQIRTHAQKYFAKLRELRERGYSGAYYMDGTRHLTKTFLGVAG 301 G W +EEH LFLK E YGKSWKK+S+I+ TRT QIRTHAQKY K+ + ++ G +G M+G + +T + G G Sbjct: 160 GRWNEEEHLLFLKGLEIYGKSWKKISQIVKTRTVVQIRTHAQKYLIKIEKAKKLGLTGTVMMNG-KAITSSTKGKGG 235
BLAST of NO02G00550 vs. NCBI_GenBank
Match: XP_002184266.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC44444.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 77.0 bits (188), Expect = 2.500e-10 Identity = 38/80 (47.50%), Postives = 48/80 (60.00%), Query Frame = 0 Query: 208 ADGEGKTKAGGKSSKEGHWTDEEHELFLKCWEKYGKSWKKLSEIITTRTNEQIRTHAQKYFAKLRELRERGYSGAYYMDG 288 A G G G WT EEH LFL+ E++GK WKK++ +I +RT QIRTHAQKYF KL + R+ G G M+G Sbjct: 102 ATASGSASQGSHGENTGRWTAEEHRLFLQGLEQHGKGWKKIASLIKSRTVVQIRTHAQKYFQKLAKARQNGEEGDVAMEG 181
BLAST of NO02G00550 vs. NCBI_GenBank
Match: XP_002184267.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC44445.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 77.0 bits (188), Expect = 2.500e-10 Identity = 38/80 (47.50%), Postives = 48/80 (60.00%), Query Frame = 0 Query: 208 ADGEGKTKAGGKSSKEGHWTDEEHELFLKCWEKYGKSWKKLSEIITTRTNEQIRTHAQKYFAKLRELRERGYSGAYYMDG 288 A G G G WT EEH LFL+ E++GK WKK++ +I +RT QIRTHAQKYF KL + R+ G G M+G Sbjct: 102 ATASGSASQGSHGENTGRWTAEEHRLFLQGLEQHGKGWKKIASLIKSRTVVQIRTHAQKYFQKLAKARQNGEEGDVAMEG 181
BLAST of NO02G00550 vs. NCBI_GenBank
Match: EWM30452.1 (SANT/Myb domain protein [Nannochloropsis gaditana]) HSP 1 Score: 75.1 bits (183), Expect = 9.700e-10 Identity = 40/75 (53.33%), Postives = 53/75 (70.67%), Query Frame = 0 Query: 218 GKSSKE--GHWTDEEHELFLKCWEKYGKSWKKLSEIITTRTNEQIRTHAQKYFAKLRELRERGYSGAYY-MDGTR 290 G++ +E G WT EEH LFLK E +GK WKK++++I TRT QIRTHAQKYF KL + ++ G+ G M+GTR Sbjct: 93 GETGRENTGRWTCEEHVLFLKGLEMHGKGWKKIAKLIKTRTVVQIRTHAQKYFQKLAKAKKNGHHGDMLGMEGTR 167
BLAST of NO02G00550 vs. NCBI_GenBank
Match: GAX24276.1 (protein MYSM1 [Fistulifera solaris]) HSP 1 Score: 74.3 bits (181), Expect = 1.600e-9 Identity = 35/64 (54.69%), Postives = 45/64 (70.31%), Query Frame = 0 Query: 224 GHWTDEEHELFLKCWEKYGKSWKKLSEIITTRTNEQIRTHAQKYFAKLRELRERGYSGAYYMDG 288 G WT EEH LFL+ E++GK WKK++ +I +RT QIRTHAQKYF KL + R+ G G M+G Sbjct: 99 GRWTAEEHRLFLQGLEQHGKGWKKIASLIKSRTVVQIRTHAQKYFQKLAKARQNGEEGDITMEG 162
BLAST of NO02G00550 vs. NCBI_GenBank
Match: XP_008863052.1 (hypothetical protein H310_01647 [Aphanomyces invadans] >ETW09247.1 hypothetical protein H310_01647 [Aphanomyces invadans]) HSP 1 Score: 73.9 bits (180), Expect = 2.200e-9 Identity = 36/78 (46.15%), Postives = 49/78 (62.82%), Query Frame = 0 Query: 216 AGGKSSKEGHWTDEEHELFLKCWEKYGKSWKKLSEIITTRTNEQIRTHAQKYFAKLRELRERGYSGAYYMDGTRHLTK 294 + G+ G WT +EHELFL+ +YGKSWK +S ++ TRT QIRTHAQKY L++ +G Y+ G RHL + Sbjct: 141 SSGEPQTTGRWTKQEHELFLEGLRRYGKSWKSISNLVVTRTLVQIRTHAQKY---LQKQSRSSKAGLQYLSGPRHLPR 215 The following BLAST results are available for this feature:
BLAST of NO02G00550 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO02G00550 ID=NO02G00550|Name=NO02G00550|organism=Nannochloropsis oceanica|type=gene|length=2852bpback to top protein sequence of NO02G00550.1 >NO02G00550.1-protein ID=NO02G00550.1-protein|Name=NO02G00550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=700bpback to top Synonyms
Publications
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