|
|
Properties
| Property Name | Value |
|---|
| Description | Zn(2)-C6 fungal-type DNA-binding domain protein |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr2 | genome | chr2:178119..181682 + |
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
| GO:0006357 | regulation of transcription by RNA polymerase II |
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
| GO:0008270 | zinc ion binding |
| GO:0008270 | zinc ion binding |
| GO:0003677 | DNA binding |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR036864 | Zn2-C6_fun-type_DNA-bd_sf |
| IPR001138 | Zn2-C6_fun-type_DNA-bd |
Homology
BLAST of NO02G00520 vs. NCBI_GenBank
Match: EWM30609.1 (Zn(2)-C6 fungal-type DNA-binding domain protein [Nannochloropsis gaditana]) HSP 1 Score: 270.0 bits (689), Expect = 2.700e-68 Identity = 215/476 (45.17%), Postives = 243/476 (51.05%), Query Frame = 0
Query: 71 PVPHWRDLNDEDNDSLSSANSAGRDGGCSSISSLGGVNAGGIPGHDGTGTGCSXXXXXGGASERRTKKRNLSNPQTSRWLTCQVCRISKTKCDGNFPCSRCWNRMCFCCRPQTQILGQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEAMAVEGSSPYLHLVFLRARPQPLVDSFLQAFARVH-QEQKXXXXXXXXXXXXXR-MDRAKAVRLLRCWQRRSAYVGADISNGIVGALVRLFQVTAEELDGGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNRRPPQLKMSNKKDTTGVLMAVSDGSFLHWASNAAFDRLFLGVAGLLNESVARRRLPILLFASLLHPQDREVWFRSVILALFTS--------------------------------SPXXXXXXXXXXXXXHQIKAISQDGRISSYILSVTPIH 513
P P W D E+ D S + A D G L V GG T + A R KKR LSNPQTSRWLTCQ+CR SKTKCDG FPCSRCWNRMC CCRPQ L XXXXXXXXXXXX DEAM V GS+PY+HLVFLR+RPQPLV+ FL+ F ++ +EQ+ R DR KAVRLLRCWQ RS YVG D+++GI+ AL LFQVT EEL G + XXXXX VL+AVSDG+ LHW NAAFDRLFL VAGLLNES+ARRRLPILLFA+LLHPQDR VWFR VI ALFTS XXXXXXXXXXXX H IKAI ++GRIS+Y L+VT ++
Sbjct: 56 PFPLWTDPGQEEGDDRSWISGASTDRG----PDLPRVARGGQSQCSETSSST--------AGGRAAKKRTLSNPQTSRWLTCQLCRESKTKCDGAFPCSRCWNRMCVCCRPQQHTLESV--APSPXXXXXXXXXXXXLPEEVTDLLEEEKQDEAMEVAGSTPYVHLVFLRSRPQPLVEVFLRTFGEMYLEEQRGGARAGGEGGRDGRGFDRGKAVRLLRCWQERSTYVGTDVTHGILPALTGLFQVTGEELGEG-----------------------------GDKEGGTEGGAGAHPQSTEAMLVAAERLRGSWAXXXXXXXXXXXXXXXXXXXXXXXVLLAVSDGTLLHWVGNAAFDRLFLSVAGLLNESMARRRLPILLFAALLHPQDRPVWFRGVIRALFTSPGPAPCTTGLVGEWEGDGVAGREGGVAPAXXXXXXXXXXXXXXXXXSHVIKAIDREGRISTYHLTVTALN 488
The following BLAST results are available for this feature:
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO02G00520 ID=NO02G00520|Name=NO02G00520|organism=Nannochloropsis oceanica|type=gene|length=3564bp
AGCACAGGGCAGGGGAGACGGAGGCAAAATGCTACGGTAAATCCTGCCGG
CCCACCAGTTGGTGCTCTAACTCCGGAGGCTGACCGAGGGATAGGCTAGG
TGATTCTCCCTGCACGTCCCTGCTCGAAAGTCAAAGCCTCCATCAGGACA
AACAGCAAGCCAAGAATAAATCGTTGGACTGCAAGCCGCTGGTTATATAC
AGTACGCACTGCCCACGCTCAAGCAGCGAGATGGCTACTAAGCACAATCC
TTATTCGTTGTCATCAGGAGGGGGAGGCACCCAAGCAGCACACCTACGTC
ATCTCGGCGTGCTTGTCCAAGACCGCCAGCAGCAGGATCAAAGGGAGCAA
CAAATGCAGCAGGAACAGCAGCTAGTGCAGCTGTCTGAGCTAGACGCTCC
GCAATATCACCAGCAGCAGCAAGCTTTCCAGCTTGCCCTTCCCGTGCCTC
ATTGGAGAGACCTCAACGATGAGGACAACGACAGCCTGTCAAGCGCGAAT
AGCGCAGGCAGAGATGGAGGATGCAGCAGCATCAGTAGCTTGGGTGGGGT
AAATGCGGGTGGTATCCCGGGCCATGATGGTACTGGTACGGGTTGTAGCA
GCAGCAGTTGTAGTGGGGGAGCATCAGAACGGCGGACAAAAAAGAGGAAC
CTCTCCAACCCGCAGACGAGTCGATGGTTGACATGCCAAGTGTGCCGCAT
TAGTAAGACTAAATGgtacgtttatgggatggatagaagatcgcctacag
ctaggagggcgattgattgctattggttgctttcagctactgccgctggt
gatgctgctccatttcacgtgttttcctgcttctctcattctgagcaagc
tacagataacccccaacccgtttccttgactgtcattgtgtttatccctt
tactttttcacccttgctaaatctttgcactttcatccttcatcattcca
cagCGACGGCAACTTCCCCTGCTCCCGTTGCTGGAACCGTATGTGCTTCT
GCTGTCGTCCACAGACCCAAATTCTTGGCCAAGCTACCACCACCAATGCC
GCCGGGGCAGGAGGGCGGAAGAGACGTCGTCGTCGCGCCTTGCCGGAGGA
GGTGGAGGATCTGCTGGAGGAGCAGAAGCAGGACGAGGCAATGGCGGTCG
AGGGAAGCTCGCCCTATCTCCACCTTGTCTTCCTTCGTGCCCGCCCTCAA
CCGCTGGTGGACTCTTTTTTACAGGCGTTTGCGCGGGTCCACCAGGAGCA
GAAACAGTGGCATCATCAATCGGCAGGAGGAGGAGGAGGACAAAGGATGG
ACAGAGCGAAGGCCGTACGGTTGTTGCGGTGCTGGCAACGGCGGAGTGCG
TATGTGGGTGCGGACATTTCGAATGGAATTGTAGGGGCATTAGTTCGGCT
GTTCCAGGTCACTGCCGAAGAACTTGACGGAGGACAGGGAGGGAGTCAGG
GGGGAGGGGAGGAAGGAAGGGAAGAGGGGCAGTCGACGGAGGAGATGGTG
AAGGCGGGTGAGAGGTTGAAGCATTCACGGGCTTTTTATTTGGCGGATGA
GGCAGAGGGCGAGGACGAGAGGGAGGACGAGGCTGCAGATCGGGAGGAGG
ATGAGTATGAGGAAGAGGAAGAGGAGGAAAAGGGGTTAAATAGGAGGCCG
CCGCAATTGAAGATGAGCAATAAGAAGGACACCACGGGGGTGCTCATGGC
AGTGAGCGATGGAAGCTTTCTCCATTGGGCAAGCAACGCCGCCTTCGATC
GCCTCTTCCTCGGAGTGGCGGGCCTCTTGAACGAGTCCGTTGCCCGTCGT
CGTCTCCCCATCCTCCTCTTCGCTTCCCTTCTCCACCCCCAAGACCGTGA
AGTGTGGTTCCGGAGCGTCATCCTCGCCCTCTTTACATCATCTCCTCCTC
CTTCTCCTGTGCCTCCTGCTCCTGCTCCTGCTGCTCACCAGATCAAGGCC
ATCAGCCAAGATGGGCGTATTTCCTCCTACATCCTGAGTGTGACCCCCAT
CCACGCCTCCTATCTGCGCAAACGACGGCGGCAAGATCTACCACCACCAC
CACCATTGGCTTCAATACCCCGCTCCTCCTCCTCCCCTCCCTCCACCTCA
TCCTTCTCGCTAGAGTGCTCTTCTGAGCCCGGGTATTGCCCGAAGGAATG
GGGGAAAGAGGAGGAGGAGGAGTGCGGCATGCTCATACAGCTGAAGCCAG
CGCCGGAGTTGAACGACATCGCCCCAGGAGGATCTGCTGCAGCCGTAGCA
GCAGCTGGTGGTGGTGATGGTGGTGGTGGTGGGAATGGGGAGGCCGCTTG
TTGTTCCTCGACCCCTTCCGAGTCGACTTGTCATTTGTCAGATGTAGACA
GTATGAAAAAAGAGGAGGGAGGGGGACGAGCAGAGGGAGGAGGAGGAAGA
GCAGACGGAGGAGGCGGTGGAGAAGGAGGAGGAAGAAGGGGAGCGACAGC
CCCGTCACGGAGGAAAGGACAAGGCGGAGGGAAGCAATCTCACCCTGAGC
TCCACAGAAGGGTGGATGGGTGTACGTCCTCTGCCCCTTCCTCAGGCACT
CCTTCGTCGAGTGCGATGATATTGCCCTACACGGGGCCTGACAATATGCG
GGCCGGCCCAAGGGGGGGAGGAGGAGGAGACTATGGCGGAGGATGCTGCC
ACCAGGAGCAGCAAGAGGAAGAGCAGCAGCAGCAGCAGCGCAATGCCAAT
GATTTCCAGCAGCTCCCTCCTCTCTTTTCGTCGTCTGCCTGTCCTCCCGC
CTATCCCACGGCCACGCATGGGCTCTCATCCCGACCCATGGCCCGCTCCT
CTGCCCCTCCTTTCGTTCCTCCACCCCATGCTGTTTCTCTTCCTGTAATT
GACTCTTCCTCGCATGGCTGTACCGTCCCCGCGGCAGAGTCCATTGAGAC
ATCTTCCATGTTGTCATCGAAGGTCGGAGGGAGGGGAGAAGGGGGAGGGG
GAGGGCTGGAGGATGAGTTGCCCTCGCCGTCGTTGCTAGAGCACGGGGAT
CTATTGATGGAGGTTTTCTCTGCCGAGGTGGCGGCCGGGTTGTTCTTAGA
TACCGGCGAGGTAGGAGAGGTAGGAGAGCAAGGGGGAAGATGCGGGGGCA
GGAAAGGGGAAGAAGAAGGGTTGAAGGGTTGGAGCTGCGGAAGGGGGGAA
GAAGGGGCTTGTGCAGGAGGTAGGGAAGAAGGTGGAGAAGCGGGTGGGGA
GGAGGGGAAGGATGCCAACGTTAATTGAGATTATTTATAGCGCTTAGGAC
GACAGTGATGCCCTGAGAGTACAAGCTGTTGATTTGAGAATGAATGAAAA
GTAGGGAATGAATATTGTGCACGTAGATCTATCGAAGGCACGCATGGGCG
AGAGGGCCTCCCTTCGCCAGCGCCGGTGTTAATTGCAAGTTCGAGGTTGG
TGGCTCGAGTTTTGAAATAAATTATTGAGTTTGCATAAGCTTCGGCAGAA
ACGCAAAAGCGAGCTTCCCAGCATACACACGGCACACTTAGAGGGCGGGA
AACTCGATAGACATAAAATAAACTTGTGTGCAAAAAGAACAAATACATCA
TGCATACGGCCGAG back to topprotein sequence of NO02G00520.1 >NO02G00520.1-protein ID=NO02G00520.1-protein|Name=NO02G00520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=920bp
MATKHNPYSLSSGGGGTQAAHLRHLGVLVQDRQQQDQREQQMQQEQQLVQ
LSELDAPQYHQQQQAFQLALPVPHWRDLNDEDNDSLSSANSAGRDGGCSS
ISSLGGVNAGGIPGHDGTGTGCSSSSCSGGASERRTKKRNLSNPQTSRWL
TCQVCRISKTKCDGNFPCSRCWNRMCFCCRPQTQILGQATTTNAAGAGGR
KRRRRRALPEEVEDLLEEQKQDEAMAVEGSSPYLHLVFLRARPQPLVDSF
LQAFARVHQEQKQWHHQSAGGGGGQRMDRAKAVRLLRCWQRRSAYVGADI
SNGIVGALVRLFQVTAEELDGGQGGSQGGGEEGREEGQSTEEMVKAGERL
KHSRAFYLADEAEGEDEREDEAADREEDEYEEEEEEEKGLNRRPPQLKMS
NKKDTTGVLMAVSDGSFLHWASNAAFDRLFLGVAGLLNESVARRRLPILL
FASLLHPQDREVWFRSVILALFTSSPPPSPVPPAPAPAAHQIKAISQDGR
ISSYILSVTPIHASYLRKRRRQDLPPPPPLASIPRSSSSPPSTSSFSLEC
SSEPGYCPKEWGKEEEEECGMLIQLKPAPELNDIAPGGSAAAVAAAGGGD
GGGGGNGEAACCSSTPSESTCHLSDVDSMKKEEGGGRAEGGGGRADGGGG
GEGGGRRGATAPSRRKGQGGGKQSHPELHRRVDGCTSSAPSSGTPSSSAM
ILPYTGPDNMRAGPRGGGGGDYGGGCCHQEQQEEEQQQQQRNANDFQQLP
PLFSSSACPPAYPTATHGLSSRPMARSSAPPFVPPPHAVSLPVIDSSSHG
CTVPAAESIETSSMLSSKVGGRGEGGGGGLEDELPSPSLLEHGDLLMEVF
SAEVAAGLFLDTGEVGEVGEQGGRCGGRKGEEEGLKGWSCGRGEEGACAG
GREEGGEAGGEEGKDANVN* back to top
|