NO02G00480, NO02G00480 (gene) Nannochloropsis oceanica

Overview
NameNO02G00480
Unique NameNO02G00480
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3414
Alignment locationchr2:162960..166373 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:162960..166373 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036770Ankyrin_rpt-contain_sf
IPR020683Ankyrin_rpt-contain_dom
IPR002110Ankyrin_rpt
Homology
The following BLAST results are available for this feature:
BLAST of NO02G00480 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G00480.1NO02G00480.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|635954gene_618Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G00480.1NO02G00480.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G00480 ID=NO02G00480|Name=NO02G00480|organism=Nannochloropsis oceanica|type=gene|length=3414bp
ACAGGCCATCATACACGATATGAACACGGCGAGCATGGAAAGTGACTCTC
AGCCGCTTTCCTCCGCGACTTCCACCGTCACCACGTACCGCAGCGAGACC
ATCGTCAATAATAATCTCCATCCAAACATGACTACTCCCACCATGAGCAT
CGTCGGCACCGCTGCTGTCACTGCTGGCGCTGTTGCCGCCACCGTACCAG
CAGAGTTCATCCTCCCATCGTTACTCGCGAAGGGCTTACCAATTCTGGGC
ATATCATACCCACAAGAACTTATCTCGGAACCGACATTGGAAGAGCGTGT
CACGACTGCTCTCAATACATCACTTCTCTCTCCAGCCCACGCCGCGACCT
CAATGGACCTAATGTGTGACCTGGCCGCAGCCGGGAGGTTGCACCTACTC
CAACGAATAATTAGAGAAGGAGGCCTAAGCCCCCAGGACTTGAACAATTG
TCGAGAAAGCACGACGGGGGCGGGATTGCTGCATGCAGCGGCCTATGATG
GGCGAGTGAATGTTATGCGGTATTTGGTGGTGAAGAAAAACGTTGGGGTT
GAGAGGAGGGACGAAGAAGGGAGGACGGCCTTGCACTATGCTGTGTTGCG
GCAACAGGAGGCAGCGGTATCCTATTTGTTGGTCAAGACACAGGCGGATG
TGGAAGAACGTGACAACGAGGGAAAGACAGCTTTGTTTCTCGCAATTACA
CATGCGGTTAATTTGGCGATCATAAAGTTGCTGGTGCGGGTGGGCAAGGC
CGAGTTGCAGATGGAGGACCACGGAGGGAGGGAGGGAGTATCGGTGAGGA
GGAGGCATACAAGTGCAGCGCATGTGGCCGCATTTTACGGAAGGTTAGAT
GTCTTGATGTTCTTGGTGGAGGAGGAGAGAGTGGTTGAAGTCGGCTGCTT
GGGCGGGATGCCTTGGGAAACATTCAAAAGAAGAGGGGGCGAAAGGGAAG
GAGGAGAAGGAGGAGATGATTGCAGGCGTTTTTATGATAGCGGGAAAGGA
GGAGGGCTAATTATGCCTTTGCATGTAGCGGCCGCGAGGGGGCAGCTGGA
GTGTGTGCAGTGGCTTGTAGCCCAAGCCCGAGCCTGTCTCGCCCTCAATC
CCTCCCTCGACGAGGACGACGAGGACGGATTCGAAGGGTACGGGAAAGGA
AGGGGGAGGAAGGGCGTGTGTTTCCGGCCTACGCCCCAGCACTTGGCTGT
AGCACATGGGCAGCTGGCGGTGTTGATTTGGTTGTGTAGAGAAGGCCCGT
CCTATGGGGGGTTGGGAGCCGAGGCATGGGTGAATCGACCTACGTTTTCC
TCCTTCTCTCCTTCCTTCTTTTCGGAGAGAGTGCGGGAGAATGGAAGGGA
CGAAGGCGTTACATGGTTGCCTTTACAGGTGGCGGTAGCGCGCGTGGACT
TGCCCATGGTTCGTTTTTTGGTGGAGCAGGCAGGGGCGGAGGTCGGGGGA
GAGGTGGGGAGGGCGGGGGGGGTGATGGCGACGACGACGACAGCCACGTC
TTGGGGCCTGGTTCGAGAAATGTGTGAGAAGAGGGGGAGGACTGAAGGGA
GGGGATATGAGATACAGGAGCTGCTGGAATACGTCGAGGGCTTGATAGAG
ACGAGGATGGGAGGGAGGGAGGGAGGGAGGGAGGGGATGCTTTCGTTGCT
GCTGGATGGGTGGAGAGAAAGCGGCGCAGTGGCAGATGGAAGAAGAGCGA
GGGAGCGAGTGACACATAAAGAAAGGGAATATATTTGTAGCAAAAGGGCG
CGAATACCAGCAGCAGCAGTGACGGCAGGAAAACGAAGAGGAGGAGAAGC
AGCCGTGGTGGGAGGAGGAGGACAGATAGCACAGGGGTGGCGCACCGCTG
GAGCCATTGACATAGAAATAGAGGCGGAGGAAGGGAGAGAGGATGGGAAA
GAGGAAGAGGAAAGGGAGGAGGAGGAACGAGTGCGGGAGATGGCGAACAG
GATGTCGTCGATCCATGTCTCGGTCAGGCGACGGCGAAGGGGAGGAGGAG
AAGGAGGGAGGGAGGGAGGGAGGGAGGAACGGACGGAGGAGCGGGGTGAC
GGGGGCTTACCAAAGGCTTTACATTTGGCGCTGGGGGAGGAGGAGAGCAG
GGAAGAGGGGATGGAGGAGGGAAAGGAATGGGAAGAGGAGGAGGAGGAAG
AAGAGGAGGAGGATGGTGACAAGACGATCTCCCCGCCACACCCAAAGCTG
CAGCAGGAGGAGGAGGAGAATGAGGACGAAGAGGATGAGGAGAAGGGCCA
GCAGCGTGCACTGTCTTTTACCTTTGATGGTGACGCCTCCTGCTCTAGCT
CATCGTCACCTTCCTCCTGCTCCTCCTGCTCCTCTTCTTCCGTCCCCTCC
TCCCCCTCCTCCTCCCCCTCCTTCGTTTCAGGCGCAGCAGGAGGAACAAC
CACCCCAATCAGCGTCATCAACAGCAGCTGCAGCAGGAGTTGCAACAGGA
GCTGCTGCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAACAACAACGAC
GACGACAACAACAACAACAATAACAACAACAATAACAACAACAACAACAA
CAACAACAACGACGACAACAACGACGACAACAACGACAACAACGACGACA
ACAACGACACCACACTCAGCAGCCACTGCAGCAACAGCGGCGTCAGGAGT
AGCAGCCGACGCAGCACCAGCATGGTCATTGTCTTGTCCCCTTCTCCTCC
CCCTCCTTCGTCTCCTTTCTCTCTGGCATCCTCTCCTTCTTCGCCTTTAT
CCCTGGCCTCCTCCTCTCCGGCTCCGGCCTCGCCCCTACCGGCCCCTCCC
CCACCTCTTTCTACTTAGAAGAATGTAGAGATGAATGGGTGGTGAAGAGA
GAGAGAGAGAAGAGAGAGAAAAGGAGATAAAGGTGGTGGAAGGAAGAAAG
GAAGGAAGGAAGGAAGGAAGGGCGGGAAAGGAAGGATCAGGCGACCAGGC
GACACCCATACTTAGGCCGTGTTGATTGAGATAATAATTATTGTCGGGGC
TGGGTAGATGATAGAGAGTATTATTATCATCGGGGTTGGGGAGTTGATAA
AATTGTGTATTCAGTACATCGGATTTGTGTTGTTGATAGAGATCATTAAG
TCATCGGGATTGGGTAGTCGATACAGATTATTTAGTACATCGGAAATCGG
GTAGTTGGTAGAAAGATCGTTTGGTAGATCGGGGTTGTGTAGTTAATATA
GATGAATTAGCTTATCGGGGTTAGGGTCAGTGTAACTGTAGATTGAGGTT
GTTTAATGCCTCGTGGTGTACAGGGAGAAAAGCCCACGACGTCGAGTACG
GGTGGACGAAGAAGTCAGTAGATCAATGATAGATATAGGTCGGGAATACG
GATGATTACGGTACTAGTGATTGGTAGTGGTCAGTAGATCAATGACAGAT
ATATGTCGGGAATA
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protein sequence of NO02G00480.1

>NO02G00480.1-protein ID=NO02G00480.1-protein|Name=NO02G00480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=933bp
MNTASMESDSQPLSSATSTVTTYRSETIVNNNLHPNMTTPTMSIVGTAAV
TAGAVAATVPAEFILPSLLAKGLPILGISYPQELISEPTLEERVTTALNT
SLLSPAHAATSMDLMCDLAAAGRLHLLQRIIREGGLSPQDLNNCRESTTG
AGLLHAAAYDGRVNVMRYLVVKKNVGVERRDEEGRTALHYAVLRQQEAAV
SYLLVKTQADVEERDNEGKTALFLAITHAVNLAIIKLLVRVGKAELQMED
HGGREGVSVRRRHTSAAHVAAFYGRLDVLMFLVEEERVVEVGCLGGMPWE
TFKRRGGEREGGEGGDDCRRFYDSGKGGGLIMPLHVAAARGQLECVQWLV
AQARACLALNPSLDEDDEDGFEGYGKGRGRKGVCFRPTPQHLAVAHGQLA
VLIWLCREGPSYGGLGAEAWVNRPTFSSFSPSFFSERVRENGRDEGVTWL
PLQVAVARVDLPMVRFLVEQAGAEVGGEVGRAGGVMATTTTATSWGLVRE
MCEKRGRTEGRGYEIQELLEYVEGLIETRMGGREGGREGMLSLLLDGWRE
SGAVADGRRARERVTHKEREYICSKRARIPAAAVTAGKRRGGEAAVVGGG
GQIAQGWRTAGAIDIEIEAEEGREDGKEEEEREEEERVREMANRMSSIHV
SVRRRRRGGGEGGREGGREERTEERGDGGLPKALHLALGEEESREEGMEE
GKEWEEEEEEEEEEDGDKTISPPHPKLQQEEEENEDEEDEEKGQQRALSF
TFDGDASCSSSSSPSSCSSCSSSSVPSSPSSSPSFVSGAAGGTTTPISVI
NSSCSRSCNRSCCSSSSSSSSNNNNNDDDNNNNNNNNNNNNNNNNNNDDN
NDDNNDNNDDNNDTTLSSHCSNSGVRSSSRRSTSMVIVLSPSPPPPSSPF
SLASSPSSPLSLASSSPAPASPLPAPPPPLST*
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Synonyms
Publications