NO02G00450, NO02G00450 (gene) Nannochloropsis oceanica

Overview
NameNO02G00450
Unique NameNO02G00450
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1254
Alignment locationchr2:154732..155985 +

Link to JBrowse

Properties
Property NameValue
DescriptionGeneral transcription factor II H, polypeptide 2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:154732..155985 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
GO:0006289nucleotide-excision repair
GO:0006281DNA repair
GO:0006351transcription, DNA-templated
GO:0006289nucleotide-excision repair
GO:0006281DNA repair
Vocabulary: Cellular Component
TermDefinition
GO:0000439transcription factor TFIIH core complex
GO:0005675transcription factor TFIIH holo complex
GO:0005634nucleus
GO:0000439transcription factor TFIIH core complex
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0046872metal ion binding
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR036465vWFA_dom_sf
IPR012170TFIIH_SSL1/p44
IPR007198Ssl1-like
IPR004595TFIIH_C1-like_dom
IPR002035VWF_A
Homology
BLAST of NO02G00450 vs. NCBI_GenBank
Match: CBJ30838.1 (General transcription factor II H, polypeptide 2 [Ectocarpus siliculosus])

HSP 1 Score: 351.7 bits (901), Expect = 3.200e-93
Identity = 184/418 (44.02%), Postives = 258/418 (61.72%), Query Frame = 0
Query:   30 YSWEGALDMSWVNVKMDEEGRLIS--EGQDQDEHLRRRQHEANRRKLALGQCVRRGLIRYLFLGLDASASMREIDLKPERLRMALKLCQEFVKEYFDQNPISQLGLMVTKQGEAERLTDLSANPKSHIAKLQDYALRHRAEGEASLQNLLELALSSLRAIPDYGNREVVLMYGSLTTCDPGDIFETLKKLVKARVRVSIISLSAEMYICRKVCEDTNGTYSIALDGKHLADLLMAQVAXXXXXXXXXXKGPLYMDMVLMGFPNRVHTPNAPTLAFDGANPPKPTTVAYVCPRCQARVADLPTACNICTLPLVSSSHLARSYHHLFPVTQYTEVPPTEQKELDT-----------------------------CHACLRHFDVASLKVVRLQCPTCQRVFCLDCDMYIHESLHNCPGCC 417
            Y+WE   + +W  V+ DE G + +  EGQ ++  +RRR           G+ ++RG+IRYL+L +D S +M + D++P RL + L++ Q+FV  YFDQNP+SQLG++VT++G AE++T+LS NPK+H+  L   +     +GEASLQNLLE+A +SLRA+P+YGNREVV++Y SL+TCDPGDI ET+ KL   +VR S++ L AEM++ R++ E+T+G YSIA D  H  + LMAQ            +G ++ D+V MGFP        P+L + G N  + +   Y CPRC+ + ++LP+ C IC LPLVSS HLARSYHHLFPV Q+ E+P                                      C  CLR  D++ L   R +CP C+  FCLDCDMY+H+SLHNCPGCC
Sbjct:   15 YAWEKGFERTWEGVEEDEHGNIKTREEGQRRNRRVRRR---------VGGESIKRGMIRYLYLAIDLSKTMADGDMRPSRLAVTLRIVQDFVTNYFDQNPLSQLGILVTREGRAEKITELSGNPKAHMEALTKDS---DTKGEASLQNLLEMACTSLRAVPEYGNREVVVIYSSLSTCDPGDIHETIAKLKTHKVRASVVGLGAEMFVLRRLTEETSGDYSIAGDENHYRESLMAQCT--PPPTPPGREGAMFADLVRMGFPAETQDV-FPSLGYSG-NRQELSVSGYSCPRCKTKTSELPSECVICALPLVSSPHLARSYHHLFPVPQFDEIPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYCAGCLR--DLSGLP--RYRCPECRSAFCLDCDMYVHDSLHNCPGCC 412          
BLAST of NO02G00450 vs. NCBI_GenBank
Match: XP_004493385.1 (PREDICTED: general transcription factor IIH subunit 2 [Cicer arietinum] >XP_012569253.1 PREDICTED: general transcription factor IIH subunit 2 [Cicer arietinum])

HSP 1 Score: 323.2 bits (827), Expect = 1.200e-84
Identity = 169/421 (40.14%), Postives = 247/421 (58.67%), Query Frame = 0
Query:    6 LSGLRLGGGTVEDGEEDGGETERMYSWEGAL--DMSWVNVKMDEEGRLISEGQDQDEHLRRRQHEANRRKLALGQCVRRGLIRYLFLGLDASASMREIDLKPERLRMALKLCQEFVKEYFDQNPISQLGLMVTKQGEAERLTDLSANPKSHIAKLQDYALRHRAEGEASLQNLLELALSSLRAIPDYGNREVVLMYGSLTTCDPGDIFETLKKLVKARVRVSIISLSAEMYICRKVCEDTNGTYSIALDGKHLADLLMAQVAXXXXXXXXXXKGPLYMDMVLMGFPNRVHTPNAPTLAFDGANPPKPTTVAYVCPRCQARVADLPTACNICTLPLVSSSHLARSYHHLFPVTQYTEVPPTEQKE-----LDTCHAC----LRHFDVASLKVVRLQCPTCQRVFCLDCDMYIHESLHNCPGC 416
            ++G  L G  VED +ED    + + +WE A   D SW +++ DE G L         H + R+        A    +++GLIRY+++ +D S +  E D +P R+ +  K  + F++E+FDQNP+S +GL+ TK G A+ LTDL  +P+SHI  L     +    G+ASLQN L+L   +L  IP YG+REV+++Y +L+TCDPGD+ ET++K  K+++R S+I L+AEM+IC+ +C++T GTYS+ALD  H  +L++                    +++ MGFP R       ++A    +    T   Y CPRC+ RV +LPT C IC L L+SS HLARSYHHLFP+  + E+ P+ Q +      + C  C    L H +   L V    CP C++ FCLDCD+YIHESLHNCPGC
Sbjct:    4 IAGRPLNGVVVEDDDEDEANGDGLEAWERAYTEDRSWESLQEDESGLLRPIDTTAIHHAQYRRRLRALAATAATARIQKGLIRYMYIVVDLSKAASERDFRPSRMAVIAKQVEAFIREFFDQNPLSHVGLVTTKDGVAQSLTDLGGSPESHIKALMG---KLECSGDASLQNALDLVHDNLNQIPSYGHREVLILYSALSTCDPGDLMETIQKCKKSKIRCSVIGLAAEMFICKHLCQETGGTYSVALDESHFKELILEHAPPPPAIAEYAT-----ANLIKMGFPQRA---AEGSVAICTCHEEAKTGGGYTCPRCKVRVCELPTECRICGLTLISSPHLARSYHHLFPIVPFVEISPSSQNDPSHNFPNICFGCQESLLSHGNKPELSV---SCPKCKQQFCLDCDIYIHESLHNCPGC 410          
BLAST of NO02G00450 vs. NCBI_GenBank
Match: OAD01240.1 (C2H2-type zinc finger transcription factor, partial [Mucor circinelloides f. lusitanicus CBS 277.49])

HSP 1 Score: 323.2 bits (827), Expect = 1.200e-84
Identity = 171/386 (44.30%), Postives = 234/386 (60.62%), Query Frame = 0
Query:   30 YSWEGALDMSWVNVKMDEEGRLISEGQDQDEHLRRRQHEANRRKLALGQCVRRGLIRYLFLGLDASASMREIDLKPERLRMALKLCQEFVKEYFDQNPISQLGLMVTKQGEAERLTDLSANPKSHIAKLQDYALRHRAEGEASLQNLLELALSSLRAIPDYGNREVVLMYGSLTTCDPGDIFETLKKLVKARVRVSIISLSAEMYICRKVCEDTNGTYSIALDGKHLADLLMAQVAXXXXXXXXXXKGPLYMDMVLMGFPNRVHTPNAPTLAFDGANPPKPTTVAYVCPRCQARVADLPTACNICTLPLVSSSHLARSYHHLFPVTQYTEVPPTEQKELDTCHACLRHFDVASLKVVRLQCPTCQRVFCLDCDMYIHESLHNCPGC 416
            Y+WE     SW  ++ D EGRL S      +  +R      RR L     ++RG+IR+LFL +D S +M E DL+P R+ + L   Q+FV EYFDQNPISQLG++VT+ G AE+LT+LS NP  HI  L+         GE SLQN L+LA +S+  +P +G++EV+L++GSLTTCDP DI ET+  L K  VRV+I+ L+AE+ ICR +CE T GTY + L+  H  DLL   V                 ++V MGFP R+   + P+     +   K T   Y+CPRC+++V +LP+ C+IC L LVSS HLARSYHHLFPV  + E+ P   +E   C +CL  F   +    +  CP C + FC +CD+++HE LHNCPGC
Sbjct:    4 YAWEEEYKRSWDILQEDSEGRLSSVVSQLQQQRKR------RRLLKDTAIIQRGIIRHLFLVIDLSEAMNEKDLRPSRVELTLTYAQQFVIEYFDQNPISQLGIIVTRDGIAEKLTELSGNPTDHIKALKS-KKNTETSGEPSLQNSLQLARASMLGVPSHGSKEVLLVFGSLTTCDPSDIHETIDLLKKEMVRVNIVGLAAEVQICRLLCESTKGTYGVVLNEAHYKDLLFEVVPPPAVLPNKNTS-----NLVTMGFPRRL-IEDHPSFCVCHS---KLTVGGYICPRCKSKVCELPSDCDICGLTLVSSPHLARSYHHLFPVDNFDEIKPNSGRETH-CFSCLAEFSDKTDTAGKFSCPKCTQEFCAECDIFVHEVLHNCPGC 372          
BLAST of NO02G00450 vs. NCBI_GenBank
Match: XP_003624959.1 (general transcription factor IIH subunit 2 [Medicago truncatula] >XP_024625279.1 general transcription factor IIH subunit 2 [Medicago truncatula] >XP_024625280.1 general transcription factor IIH subunit 2 [Medicago truncatula] >XP_024625281.1 general transcription factor IIH subunit 2 [Medicago truncatula] >XP_024625282.1 general transcription factor IIH subunit 2 [Medicago truncatula] >AES81177.1 general transcription factor IIH subunit 2 [Medicago truncatula])

HSP 1 Score: 323.2 bits (827), Expect = 1.200e-84
Identity = 167/414 (40.34%), Postives = 244/414 (58.94%), Query Frame = 0
Query:   14 GTVEDGEEDGGETERMYSWEGAL--DMSWVNVKMDEEGRLISEGQDQDEHLRRRQHEANRRKLALGQCVRRGLIRYLFLGLDASASMREIDLKPERLRMALKLCQEFVKEYFDQNPISQLGLMVTKQGEAERLTDLSANPKSHIAKLQDYALRHRAEGEASLQNLLELALSSLRAIPDYGNREVVLMYGSLTTCDPGDIFETLKKLVKARVRVSIISLSAEMYICRKVCEDTNGTYSIALDGKHLADLLMAQVAXXXXXXXXXXKGPLYMDMVLMGFPNRVHTPNAPTLAFDGANPPKPTTVAYVCPRCQARVADLPTACNICTLPLVSSSHLARSYHHLFPVTQYTEVPPTEQKE-----LDTCHACLRH-----FDVASLKVVRLQCPTCQRVFCLDCDMYIHESLHNCPGC 416
            G +ED +ED    + + +WE A   D SW +++ DE G L         H + R+        A    +++GLIRYL++ +D S +  E D +P R+ +  K  + F++E+FDQNP+S +GL+ TK G A  LTDL  +P+SHI  L     +    G+ASLQN LEL  S+L  IP YG+REV+++Y +L+TCDPGD+ ET++K  K+++R S+I L+AEM+IC+ +C++T GTYS+ALD  H  +L++                    +++ MGFP R       ++A    +    T   Y CPRC+ RV +LPT C +C L L+SS HLARSYHHLFP+  + E+ P+ Q +      +TC  C +      F   +   + + CP C++ FCLDCDMYIHESLHNCPGC
Sbjct:   11 GDLEDDDEDEANDDGLEAWERAYTEDRSWESLQEDESGLLRPIDTTAIHHAQYRRRLRALASNAATARIQKGLIRYLYIVVDLSKAASERDFRPSRMAVIAKQVELFIREFFDQNPLSHVGLVTTKDGVANCLTDLGGSPESHIKALMG---KLECSGDASLQNALELVHSNLNQIPSYGHREVLILYSALSTCDPGDLMETIQKCKKSKIRCSVIGLAAEMFICKHLCQETGGTYSVALDESHFKELILEHSPPPPAIAEYAT-----ANLIKMGFPQRA---AEGSVAICTCHEEAKTGGGYTCPRCKVRVCELPTECRVCGLTLISSPHLARSYHHLFPIVPFAEISPSSQNDPNHSFPNTCFGCQQSLLSQGFGAGNKAELSVSCPKCKQQFCLDCDMYIHESLHNCPGC 413          
BLAST of NO02G00450 vs. NCBI_GenBank
Match: XP_022026375.1 (general transcription factor IIH subunit 2 [Helianthus annuus] >OTG35355.1 putative general transcription factor II H2 [Helianthus annuus])

HSP 1 Score: 320.9 bits (821), Expect = 6.000e-84
Identity = 165/392 (42.09%), Postives = 238/392 (60.71%), Query Frame = 0
Query:   31 SWEGAL--DMSWVNVKMDEEGRLISEGQDQDEHLRRRQHEANRRKLALGQCVRRGLIRYLFLGLDASASMREIDLKPERLRMALKLCQEFVKEYFDQNPISQLGLMVTKQGEAERLTDLSANPKSHIAKLQDYALRHRAEGEASLQNLLELALSSLRAIPDYGNREVVLMYGSLTTCDPGDIFETLKKLVKARVRVSIISLSAEMYICRKVCEDTNGTYSIALDGKHLADLLMAQVAXXXXXXXXXXKGPLYMDMVLMGFPNRVHTPNAPTLAFDGANPPKPTTVAYVCPRCQARVADLPTACNICTLPLVSSSHLARSYHHLFPVTQYTEVP----PTEQKELDTCHACLRH-FDVASLKVVRLQCPTCQRVFCLDCDMYIHESLHNCPGC 416
            +WE A   + SW +++ DE G L         H + R+   +    +    +++GLIRYL+L +D S +  E+DL+P R+ +  K  + F++E+FDQNP+SQ+GL+V K G A+ LTDL  +P+SHI  L     +    GEASLQN LEL    L  IP YG+REV+++Y +L+TCDPGD+ ET++K  K+++R S+I LSAE+YIC+ +C++T G YS+ALD  HL DL++                    +++ MGFP R        ++    +        Y+CPRC+ARV +LPT C IC L LVSS HLARSYHHLFPVT + +V     P + +   +C  C +   +  ++ V  + CP C++ FCLDCD+YIHESLHNCPGC
Sbjct:   28 AWEKAYADERSWESLQEDESGLLRPIDNQALHHAQYRRRLRSLSSASAASRIQKGLIRYLYLVIDLSKAAGEMDLRPSRMVVVAKQVEAFIREFFDQNPLSQIGLVVIKDGVAQCLTDLGGSPESHIKALMG---KLGCSGEASLQNALELVHEQLNQIPSYGHREVIILYSALSTCDPGDVMETIQKCKKSKIRCSVIGLSAEIYICKYLCQETGGLYSVALDEAHLKDLILEHAPPPPAIAEF-----AIANLIKMGFPQRA---AEGVISICSCHKEAKFGGGYICPRCKARVCELPTECRICGLTLVSSPHLARSYHHLFPVTPFDDVAPMLVPNQHRRPKSCFGCQQSLLNPGNMPVRCVTCPKCKQFFCLDCDIYIHESLHNCPGC 408          
BLAST of NO02G00450 vs. NCBI_GenBank
Match: CCI43763.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 319.7 bits (818), Expect = 1.300e-83
Identity = 167/393 (42.49%), Postives = 237/393 (60.31%), Query Frame = 0
Query:   25 ETERMYSWEGALDMSWVNVKMDEEGRLISEGQDQDEHLRRRQHEANRRKLALGQCVRRGLIRYLFLGLDASASMREIDLKPERLRMALKLCQEFVKEYFDQNPISQLGLMVTKQGEAERLTDLSANPKSHIAKLQDYALRHRAEGEASLQNLLELALSSLRAIPDYGNREVVLMYGSLTTCDPGDIFETLKKLVKARVRVSIISLSAEMYICRKVCEDTNGTYSIALDGKHLADLLMAQVAXXXXXXXXXXKGPLYMDMVLMGFPNRVHTPNAPTLAFDGANPPKPTTVAYVCPRCQARVADLPTACNICTLPLVSSSHLARSYHHLFPVTQYTEVPPT--EQKELDTCHACLRHFDVASLKVVRLQCPTCQRVFCLDCDMYIHESLHNCPGC 416
            E  + YSWEGA + SW  ++ DE GRL+ +     +          +R+L + + VR+GLIRY+++ +D S  M   D KP RL     + Q FV++YFDQNPISQLGL+  K  ++ERL+DLS NPK+HI ++++       + E SLQN L++A ++L+ +P YG+RE++++YGSL T DPGDIF+TL  L +  +RVS + + AEM + RK+ +DTNGTY +ALD  HL  L+               +   +  +V MGFP R     +  L+    +    TT+ Y+CPRC+++  DLPT C IC LPLVSS HL+RSYHHLFP+ ++  +  +  + K   TC  CL     A L     QCPTC   FC +CD +IH S HNCPGC
Sbjct:    6 ENTKGYSWEGAFERSWDAIEEDESGRLVVDVASNKDQ--------RQRQLEIARNVRKGLIRYVYIIVDLSRGMTNKDWKPHRLACVSDVLQHFVRDYFDQNPISQLGLIGIKGMKSERLSDLSGNPKNHIERIKEAV---AVDKEPSLQNALDIAKAALKIVPSYGSREIIVIYGSLVTADPGDIFQTLSALKRENIRVSFLGIGAEMRLLRKISDDTNGTYFVALDANHLKALMGRFTIPSPTVASNASR---FATLVEMGFPQR----RSGALSLCTCH-QSFTTIGYLCPRCKSKSCDLPTVCQICNLPLVSSPHLSRSYHHLFPIVKFKSMTSSQVDSKAQGTCFGCLIPLQYA-LDDSAFQCPTCFHYFCSECDEFIHHSHHNCPGC 378          
BLAST of NO02G00450 vs. NCBI_GenBank
Match: OBZ83733.1 (TFIIH basal transcription factor complex p47 subunit [Choanephora cucurbitarum])

HSP 1 Score: 319.3 bits (817), Expect = 1.800e-83
Identity = 172/400 (43.00%), Postives = 240/400 (60.00%), Query Frame = 0
Query:   18 DGEEDGGETERMYSWEGALDMSWVNVKMDEEGRLISEGQDQDEHLRRRQHEANRRKLALGQCVRRGLIRYLFLGLDASASMREIDLKPERLRMALKLCQEFVKEYFDQNPISQLGLMVTKQGEAERLTDLSANPKSHIAKLQDYALRHRAE--GEASLQNLLELALSSLRAIPDYGNREVVLMYGSLTTCDPGDIFETLKKLVKARVRVSIISLSAEMYICRKVCEDTNGTYSIALDGKHLADLLMAQVAXXXXXXXXXXKGPLYMDMVLMGFPNRVHTPNAPTLAFDGANPPKPTTVAYVCPRCQARVADLPTACNICTLPLVSSSHLARSYHHLFPVTQYTEVPPTEQKELDTCHACLRHFDVASLKVVRLQCPTCQRVFCLDCDMYIHESLHNCPGC 416
            DG +D       Y+WE     SW  ++ D EGRL S      +  +R      RR L     ++RG+IR+LFL +D S +M E DL+P R+ + L   Q+FV E+FDQNPISQLG+++T+ G AE+LT+LS NP  HI  ++   L+   E  GE SLQN L+LA +S+  +P +G++EV+L++GSLTTCDP DI ET++ L K  VRV+I+ L+AE+ ICR + E T GTY + L+  H  DLL   +                 ++V+MGFP R+     PT     +   K T   Y+CP+C++++ +LP+ C+IC L LVSS HLARSYHHLFPV  + EV       L  C +CL  FD       +  CP CQ+ FC +CD+++HE LHNCPGC
Sbjct:   19 DGNQDDDHGNGGYAWEEEYKRSWDILQEDAEGRLSSVVSQLQQQRKR------RRLLKDTAIIQRGIIRHLFLVIDLSEAMNEKDLRPSRVELTLTYAQQFVVEFFDQNPISQLGIIITRDGIAEKLTELSGNPTDHIKAIK---LKKNTETSGEPSLQNALQLARASMLGVPSHGSKEVLLLFGSLTTCDPADIHETVQLLKKEMVRVNIVGLAAEVQICRLLAETTKGTYGVVLNEAHYKDLLFEVIPPPAVLPNKNTS-----NLVMMGFPKRL-IEEHPTFCVCHS---KLTLGGYICPKCKSKICELPSDCDICGLTLVSSPHLARSYHHLFPVHNFDEVKNNGGHALH-CFSCLTQFDKQETSGGKFSCPKCQQEFCSECDIFVHEVLHNCPGC 399          
BLAST of NO02G00450 vs. NCBI_GenBank
Match: AIU50502.1 (GTF2H2, partial [Ginkgo biloba])

HSP 1 Score: 318.9 bits (816), Expect = 2.300e-83
Identity = 179/407 (43.98%), Postives = 248/407 (60.93%), Query Frame = 0
Query:   17 EDGEEDGGET-ERMYSWEGALDMSWVNVKMDEEGRLISEGQDQDEHLRRRQHEANRRKLALGQCVRRGLIRYLFLGLDASASMREIDLKPERLRMALKLCQEFVKEYFDQNPISQLGLMVTKQGEAERLTDLSANPKSHIAKLQDYALRHRAE--GEASLQNLLELALSSLRAIPDYGNREVVLMYGSLTTCDPGDIFETLKKLVKARVRVSIISLSAEMYICRKVCEDTNGTYSIALDGKHLADLLMAQVAXXXXXXXXXXKGPLYMDMVLMGFPNRVHTPNAPTLAFDGANPPKPTTVAYVCPRCQARVADLPTACNICTLPLVSSSHLARSYHHLFPVTQYTEV----PPTEQKELDTCHACLRHFDVASLKV-VRLQCPTCQRVFCLDCDMYIHESLHNCPGC 416
            E+ E++G E  ER Y    A + SW  ++ DE G L  +        +++Q    RR+L +   ++RGLIRYL++ +D S +  E D +P R+ +     + FV+E+FDQNP+S LG+++ K G A RLTDLS +P++HI      ALR + E  G+ SLQN L+LA S L  IP YG+REV+++Y +L+TCDPGDI +++KK  +A++R S++ LSAE+YIC+ +CE+T G Y++ALDG HL DL++                     +V MGFP R     A       A   +  T  Y CPRC+ARV +LPT C+IC L LVSS HLARSYHHLFPV  + EV      + Q+   TC  C +       KV VR+ CP C++ FC DCD+YIHESLHNCPGC
Sbjct:    2 EEEEDEGREAWERAY----ADERSWEALQEDESGLLHVD--------KKQQQRQYRRRLQVASHIQRGLIRYLYILIDFSRAAGEKDFEPSRMVVVANCVEAFVREFFDQNPLSHLGIIIMKNGIALRLTDLSGSPEAHIK-----ALRSKLESGGDPSLQNSLDLAHSYLSQIPSYGHREVLILYSALSTCDPGDIMDSIKKCKEAKMRCSVVGLSAEIYICKHLCEETGGLYTVALDGSHLKDLVLEHAPPPPAIAEF-----AVASLVKMGFPQR----GAEGAISICACHKEVKTCCYTCPRCKARVCELPTQCHICGLTLVSSPHLARSYHHLFPVIPFEEVLSRANASSQRLPRTCFGCQQFLPNPGSKVGVRVACPRCKQHFCFDCDIYIHESLHNCPGC 382          
BLAST of NO02G00450 vs. NCBI_GenBank
Match: ETI51116.1 (hypothetical protein F443_05486 [Phytophthora parasitica P1569])

HSP 1 Score: 318.2 bits (814), Expect = 3.900e-83
Identity = 173/406 (42.61%), Postives = 245/406 (60.34%), Query Frame = 0
Query:   25 ETERMYSWEGALDMSWVNVKMDEEGRLISEGQDQDEHLRRRQHEANRRKLALGQCVRRGLIRYLFLGLDASASMREIDLKPERLRMALKLCQEFVKEYFDQNPISQLGLMVTKQGEAERLTDLSANPKSHIAKLQDYALRHRAEGEASLQNLLELALSSLRAIPDYGNREVVLMYGSLTTCDPGDIFETLKKLVKARVRVSIISLSAEMYICRKVCEDTNGTYSIALDGKHLADLLMAQVAXXXXXXXXXXKGPLYMDMVLMGFPNRVHTPNAPTLAFDGANPPKPTTVAYVCPRCQARVADLPTACNICTLPLVSSSHLARSYHHLFPVTQYTE---------------VPPTEQKELDTCHACLRHFDVASLKVVRLQCPTCQRVFCLDCDMYIHESLHNCPGC 416
            E    Y+WEGAL+ SW  ++ D+ G L       D+ ++++Q +   R+L + + VR+GLIRY ++ +D S  M   D KP RL  A ++ Q+FVK+YFDQNPISQLG++  K   AE+L+DLS NPK+HI ++   A     + E SLQN L++A SSL+ +P YG+REVV++YG+L T DPGDIF+TL  L +  +RVS I + AEM++ R++ + T+GTY +A+D  H+  L+    A              +  +V MGFP R     +  L+    +    TTV Y+CPRC+++  DLPT C +C LPLVSS HLARSYHHLFPV ++T+                P   QK+   C  CL    +   +    +C TCQ VFC +CDMY+H+SLHNCPGC
Sbjct:    4 EASSGYAWEGALERSWDVIEEDDSGNL-----KIDQAVKKQQRQ---RRLEIARNVRKGLIRYTYVVMDLSRGMASKDWKPHRLACASEVVQQFVKDYFDQNPISQLGIIGIKGMTAEKLSDLSGNPKTHIERI---AAALAVDKEPSLQNALDIARSSLKTVPAYGSREVVVVYGNLVTADPGDIFQTLASLKRENIRVSFIGIGAEMHLLRRIADGTDGTYHVAVDADHMKRLM---TAFTFPSPTVATAASRFATLVEMGFPQR----RSGALSLCTCHQAF-TTVGYLCPRCKSKSCDLPTTCQVCNLPLVSSPHLARSYHHLFPVAKFTQHLLRSGVTGEKGAKVSPELVQKK---CFGCLLPLGLDG-EGAAYECTTCQNVFCSECDMYVHDSLHNCPGC 386          
BLAST of NO02G00450 vs. NCBI_GenBank
Match: CEP09348.1 (hypothetical protein [Parasitella parasitica])

HSP 1 Score: 318.2 bits (814), Expect = 3.900e-83
Identity = 171/398 (42.96%), Postives = 238/398 (59.80%), Query Frame = 0
Query:   18 DGEEDGGETERMYSWEGALDMSWVNVKMDEEGRLISEGQDQDEHLRRRQHEANRRKLALGQCVRRGLIRYLFLGLDASASMREIDLKPERLRMALKLCQEFVKEYFDQNPISQLGLMVTKQGEAERLTDLSANPKSHIAKLQDYALRHRAEGEASLQNLLELALSSLRAIPDYGNREVVLMYGSLTTCDPGDIFETLKKLVKARVRVSIISLSAEMYICRKVCEDTNGTYSIALDGKHLADLLMAQVAXXXXXXXXXXKGPLYMDMVLMGFPNRVHTPNAPTLAFDGANPPKPTTVAYVCPRCQARVADLPTACNICTLPLVSSSHLARSYHHLFPVTQYTEVPPTEQKELDTCHACLRHFDVASLKVVRLQCPTCQRVFCLDCDMYIHESLHNCPGC 416
            D  +D       Y+WE     SW  ++ D EGRL S      +  +R      RR L     ++RG+IR+LFL +D S +M E DL+P R+ + L   Q+FV EYFDQNPISQLG+++T+ G AE+LT+LS NP  HI  L+         GE SLQN L+LA +S+  +P +G++EV++++GSLTTCDP DI ETL  L K  VRV+I+ L+AE+ ICR +C+ T GTY + L+  H  DLL   V                 ++V MGFP R+   + P+     +   K T   Y+CPRC+++V +LP+ C+IC L LVSS HLARSYHHLFPV  + E+     +E   C +CL  FD   +   +  CP C++ FC +CD+++HE LHNCPGC
Sbjct:   19 DANQDDDVGNGGYAWEEEYKRSWDILQEDSEGRLSSVVSQLQQQRKR------RRLLKDTAIIQRGIIRHLFLVIDLSEAMNEKDLRPSRVELTLTYAQQFVIEYFDQNPISQLGIIITRDGIAEKLTELSGNPTDHIKALKT-KKNTETSGEPSLQNSLQLARASMLGVPSHGSKEVLMVFGSLTTCDPSDIHETLDLLKKEMVRVNIVGLAAEVQICRLLCQATKGTYGVVLNEAHYKDLLFEVVPPPAVLPSKNTS-----NLVTMGFPRRL-IEDQPSFCVCHS---KLTLGGYICPRCKSKVCELPSDCDICGLTLVSSPHLARSYHHLFPVDNFDEIKNNSGRETH-CFSCLTEFDKTEV-AGKFSCPKCEQEFCAECDIFVHEVLHNCPGC 398          
The following BLAST results are available for this feature:
BLAST of NO02G00450 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CBJ30838.13.200e-9344.02General transcription factor II H, polypeptide 2 [... [more]
XP_004493385.11.200e-8440.14PREDICTED: general transcription factor IIH subuni... [more]
OAD01240.11.200e-8444.30C2H2-type zinc finger transcription factor, partia... [more]
XP_003624959.11.200e-8440.34general transcription factor IIH subunit 2 [Medica... [more]
XP_022026375.16.000e-8442.09general transcription factor IIH subunit 2 [Helian... [more]
CCI43763.11.300e-8342.49unnamed protein product [Albugo candida][more]
OBZ83733.11.800e-8343.00TFIIH basal transcription factor complex p47 subun... [more]
AIU50502.12.300e-8343.98GTF2H2, partial [Ginkgo biloba][more]
ETI51116.13.900e-8342.61hypothetical protein F443_05486 [Phytophthora para... [more]
CEP09348.13.900e-8342.96hypothetical protein [Parasitella parasitica][more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006629NSK006629Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G00450.1NO02G00450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573527gene_615Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G00450.1NO02G00450.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G00450 ID=NO02G00450|Name=NO02G00450|organism=Nannochloropsis oceanica|type=gene|length=1254bp
ATGTCATCCGATGCATTGAGTGGACTGCGCCTTGGTGGTGGTACGGTGGA
GGATGGGGAGGAGGATGGTGGCGAGACAGAGCGCATGTATTCCTGGGAGG
GGGCTTTAGACATGTCCTGGGTAAACGTAAAGATGGACGAAGAGGGCCGA
CTCATCTCCGAGGGACAAGACCAAGACGAGCACCTACGACGGCGACAGCA
CGAGGCTAACAGAAGAAAGCTGGCCTTGGGCCAATGTGTAAGAAGGGGAC
TGATCCGCTACCTCTTCCTTGGGCTCGACGCCAGTGCCTCCATGAGGGAA
ATCGACTTAAAACCCGAACGCCTTCGCATGGCCCTCAAACTCTGTCAAGA
GTTCGTTAAGGAGTACTTCGACCAAAACCCTATCTCACAGCTCGGTCTGA
TGGTGACCAAGCAAGGCGAAGCAGAACGCTTGACAGACCTGAGCGCGAAC
CCCAAATCCCACATTGCAAAGCTTCAAGACTACGCCCTCCGGCATCGTGC
CGAGGGGGAGGCCTCCCTTCAGAATCTCCTCGAGCTTGCCTTGTCGTCCC
TAAGAGCCATTCCTGACTACGGCAATCGAGAAGTCGTGCTGATGTACGGA
AGCCTGACCACCTGCGACCCCGGAGACATATTCGAAACATTGAAAAAACT
CGTCAAAGCCAGGGTGCGCGTCTCCATCATCAGCCTCTCCGCCGAGATGT
ACATCTGTCGTAAGGTCTGCGAGGACACCAACGGCACCTATTCCATCGCC
TTAGATGGAAAACACCTCGCAGACCTGCTCATGGCTCAAGTCGCCCCTCC
TCCCACCACCACCACCGCTGCCTCCAAAGGCCCCCTGTACATGGACATGG
TGCTCATGGGTTTCCCCAACCGCGTGCATACTCCAAACGCCCCCACCCTT
GCCTTTGACGGCGCAAACCCCCCTAAACCTACGACAGTCGCCTATGTCTG
CCCTCGGTGCCAAGCACGGGTGGCGGACCTGCCCACAGCCTGCAACATTT
GCACGTTACCACTGGTCTCGTCCTCTCATCTCGCCCGCTCCTACCACCAC
CTATTTCCCGTCACTCAATACACGGAGGTGCCACCAACCGAGCAAAAGGA
GCTGGATACGTGTCATGCCTGCCTGCGGCACTTTGATGTGGCCTCGCTGA
AGGTGGTGCGGTTGCAGTGCCCCACTTGCCAGCGCGTTTTTTGTTTGGAC
TGTGACATGTACATTCATGAGAGTTTGCACAACTGCCCAGGGTGCTGTGG
ATGA
back to top

protein sequence of NO02G00450.1

>NO02G00450.1-protein ID=NO02G00450.1-protein|Name=NO02G00450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=418bp
MSSDALSGLRLGGGTVEDGEEDGGETERMYSWEGALDMSWVNVKMDEEGR
LISEGQDQDEHLRRRQHEANRRKLALGQCVRRGLIRYLFLGLDASASMRE
IDLKPERLRMALKLCQEFVKEYFDQNPISQLGLMVTKQGEAERLTDLSAN
PKSHIAKLQDYALRHRAEGEASLQNLLELALSSLRAIPDYGNREVVLMYG
SLTTCDPGDIFETLKKLVKARVRVSIISLSAEMYICRKVCEDTNGTYSIA
LDGKHLADLLMAQVAPPPTTTTAASKGPLYMDMVLMGFPNRVHTPNAPTL
AFDGANPPKPTTVAYVCPRCQARVADLPTACNICTLPLVSSSHLARSYHH
LFPVTQYTEVPPTEQKELDTCHACLRHFDVASLKVVRLQCPTCQRVFCLD
CDMYIHESLHNCPGCCG*
back to top
Synonyms
Publications