NO02G00400, NO02G00400 (gene) Nannochloropsis oceanica

Overview
NameNO02G00400
Unique NameNO02G00400
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length5226
Alignment locationchr2:138197..143422 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:138197..143422 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
[Close]
BLAST of NO02G00400 vs. NCBI_GenBank
Match: EWM30627.1 (hypothetical protein Naga_100440g3 [Nannochloropsis gaditana])

HSP 1 Score: 112.1 bits (279), Expect = 1.100e-20
Identity = 70/182 (38.46%), Postives = 100/182 (54.95%), Query Frame = 0 
Query:   85 CDGITQDMPSETQRRLCELQAKVLISTLVYLALAFILSVTAVFARPRQKTNFRHLLYALACISLGQVVAGSMMGWSWIMIKNTLEEYFSTAYVEVNNLRMTLTWGWYLALFSCLAAAVVCPVSLYMACTVFGGYAEKAV----EKGRKGIDKDLHPQPHRGTRVIPPTGEVQMRDLSPFTRH 263
            C+G +Q +P++TQR+LC LQ +V  +TL YL LAF +S+  +  +P+++ N   +L  +A +S+ QV  G  M  +W  +KN LE +FS AYVEVNNL+M++  G YLAL S LAAA     +    C +      + V       RK  D  L      GT V  P G V+M     F+ H
Sbjct:  205 CEGDSQGIPTDTQRQLCHLQRRVFETTLTYLCLAFAVSLMLICVKPKRRRNVCLVLGVVAILSVAQVGTGLAMVGTWAALKNALERFFSEAYVEVNNLKMSIQLGGYLALASGLAAAA---ATFLAFCMIVESNRREIVGTPRTVARKKGDVLLRQDREVGTYVAEPRGGVEMNAYPEFSSH 383
[Close]
BLAST of NO02G00400 vs. NCBI_GenBank
Match: EWM30628.1 (hypothetical protein Naga_100440g3 [Nannochloropsis gaditana])

HSP 1 Score: 69.7 bits (169), Expect = 6.100e-8
Identity = 34/85 (40.00%), Postives = 55/85 (64.71%), Query Frame = 0 
Query:   85 CDGITQDMPSETQRRLCELQAKVLISTLVYLALAFILSVTAVFARPRQKTNFRHLLYALACISLGQVVAGSMMGWSWIMIKNTLE 170
            C+G +Q +P++TQR+LC LQ +V  +TL YL LAF +S+  +  +P+++ N   +L  +A +S+ QV  G  M  +W  +KN LE
Sbjct:  205 CEGDSQGIPTDTQRQLCHLQRRVFETTLTYLCLAFAVSLMLICVKPKRRRNVCLVLGVVAILSVAQVGTGLAMVGTWAALKNALE 289
The following BLAST results are available for this feature:
BLAST of NO02G00400 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM30627.11.100e-2038.46hypothetical protein Naga_100440g3 [Nannochloropsi... [more]
EWM30628.16.100e-840.00hypothetical protein Naga_100440g3 [Nannochloropsi... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR068ncniR068Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006621NSK006621Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G00400.1NO02G00400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|643115gene_10203Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100440g3gene46Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G00400.1NO02G00400.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G00400 ID=NO02G00400|Name=NO02G00400|organism=Nannochloropsis oceanica|type=gene|length=5226bp
ATGGTGCAAAGACAGGGGTTGCGGGCATTAGgtgcgttttaatccatatt
gtccaagggggagtcacgcgagctcatcacacacaccctcccgtcttcgc
accctccatcttgtcgaacgattcctttagTCACTTTTCTGTCCATATCC
TCGATGGTCTGTATCCTACTGTCGGTCTTCATACCAGgtgagggaaacat
cgaatcggtagagagagctagaggaggagagggagggaggaggagagaag
acgagaggtagcgcaaggagcacagacgtgtatgttcatgcgccatggcc
cgtttcaacaacagaggtcgctctggcgtaaatcagtgcggcataaggtg
tatggttgtagtcgaagcatttttttgcacgagagagggatgcccctctc
ctcatgctcaaccctccctccctccctccctccctccctcccgctctcct
tccttccttcctttcccccccccctctcagGCATTAATTGGTTCGGCAAA
CGAAAACTGGTCATTTTTGAGGACGTGGAGGGAAACTACATCGAGATCAC
GAGCATCTTCACGTTTGGCTTTCTAAGGACGACGCAAAGCATTATTACCG
AGATGGACCAGGAGATCTTCCGGCAAGACGGCTACCACCACTGgtgaaca
aaccctccctctctcccttcctccttccttccttccctccttccttccct
ccgtcattcattacgatctattgagggggaaatctggtccgtagtaataa
agtgcgtctcccccttcctccctccctccctccctccctccctctcaccc
ttcctccctctcgacgccctcgtcagGTGCGACGGCATCACCCAGGACAT
GCCATCCGAGACTCAGCGGCGTCTGTGCGAGCTACAGGCTAAGGTGCTTA
TATCGACTCTCGTGTACCTGGCGCTGGCCTTCATTCTCTCAGTAACGGCC
GTCTTTGCACGCCCACGGCAGAAAACgtacggggcgacgggagggaggga
gggagggaggggaggggaggaacagattctccgagatcaagtggacttcc
gctctaaccgctcatatgtgctcgccttgccacctccttacatttttgcc
gctccctccctccctccctcagGAACTTCCGCCATCTTTTGTACGCGCTC
GCATGTATTTCTCTTGGACAGGTGGTGGCGGGTTCGATGATGGGCTGGAG
CTGGATCATGATCAAGAATACTTTAGAAGAGgtagggagggagggaggga
gggagggagggaggaaaggagggaatgaaggaaaggagggagggaggagg
ggaggaagggagcttgaaaagaaactacttctcggcagtgaggctggtca
aggatgagatgaaacagatcccgggctgctattggatgtggggtaatgtc
tccttatccttctcctccccgcttgcttcctccctccctccctccctccc
tcctcccccctccctcctcccccctcccagTACTTCTCCACCGCCTACGT
CGAAGTGAACAACCTGCGCATGACCTTGACCTGGGGATGGTACCTGGCTC
TGTTCTCGTGTTTGGCTGCGGCTGTTGTGTGCCCCGTCTCCCTGTACATG
GCTTGCACGGTGTTTGGAGGGTACGCAGAGAAAGCCGTTGAGAAGGGGAG
GAAGGGAATCGACAAGgtgagagagagggaagggagggaaagagggaagg
agggaaggagggagggcaaagggaggatctgaatcccttttcatttcgag
gacaaaaattaaatccgacatcgcagagacatgtcatccttactcaatgc
ccctcctcttcttgatttaaagGATCTCCACCCCCAGCCGCACAGAGGCA
CAAGGGTCATTCCCCCCACGGGCGAGGTGCAGATGCGTGATCTCTCCCCT
TTCACGCGCCACAgtgcccagtgggaagaaggggaggaggttgagatgga
gggagagacatatggacagtctatgggaggagagcgaaggccattgaaca
cgtctccgtcttcatctcctgtacggagGCTGCCGCGTGGGCAGCGGGGG
TGAAGGGAAGGAAGgtaggaaggaaggaaggaaggaaggagaaagaagga
aagaaaggagggagggaaggagggaaggaggcagaggagacgtagagggc
tagactgtctgtatatagaaggggctaaccgggaggaggctagtcacctg
tttccagaacacgccaatttatagggacaaaaataacatgtgaaatccaa
ggaggtttgtagacttctggcataaagcaaaatagtttcaagaacgtaaa
ataatgtgacagGAGAGCAGGTGAGGATGCATGAGGCTGGAGTCGGGCTC
GATCTCTGTTTGCTGTCGgtaagagaagggggatgatgctttgcttgcgc
ttgggtgtctccatctcgagtacggagattatatacccttttaaccctaa
cctcaaaccaacatgctggattatctgcgtgttctgtcgctgcgacgagc
tccacacagGCTTGCAATAAAGCGAGGGGAAGAAgtaagtgagcctgagg
cccatctcaacttcacatgggaaaacggctcatgtggaagtccaaaggcc
cacccaaaacacacacacacacacacacacacacacacacacgcgcgcgc
gcgcgcgcgcacgcacgcacatgcacgcaactaactacagGAAACCTCAC
CATGTATAAGCGCCATGCATCGCCGGCCGGACTGATTGGCACATCTCTAT
GCCCCGTCGCTGCAGAGgtcagaacttcctccctccatcccttcctgtac
ccctccccccgccttttccctttgacgccggtctcatccgcacacacatt
acaccagGACGCCGACCCACAAAAGCAGCAGGTACGTCCTTCGTCATCCT
CTTCCTCCCGCTGGAGTCCCAAGCTGGTTCTTCCGCCTCCTTCGACTTCC
TCCTCCCCCCATTCTCCTGCCTCTGCCTCCCGCCATTCCCCGCCTGCCGG
TATGGAAACTCAAGAAGCCCTCCTCACGCGCATCTACCACCGAGAATGGT
ATTCTAATGTGCCTGTCCATTTTGCCTGGCCCGTTCCCGACCAAAAACGC
GGTAGACCCTCCACCTTATCTTCCTCCTGCTCCTCCTGCCCTCCTTCGTT
ATCGTCACCACCGGCACCAAAACAGATAAACTGCGAAAGTGACACCGCAC
GCATGGAGGCATGGCAAACAGCTCACTCAAGTTACCTGGATAATGCTCGC
CGAAGCCGCGGTGGTAACGGTAGAGGGGGAGGAAAGGAGGGAGGGAAGGG
AGGACAGAGGGAATCCGACACTGGGGAGGAGGGGTGGATGCCCCGGGGGA
CCGACTGCAGGGCGGTGGAGGAGGAGAGGAAAGCAAGGAGAATGAAGTAC
GAAGAAGATTTAGCGATCTTGTGGGAAGAGCGTCTGAAAGGGGCGAGGGA
CAAGGAGGAGGGAAGAAGGAAGGATATTGGGAAGGAGAAGGAGGAGGGGT
GGTGGGTAGATTTGAATGCGCCTGTGTCGGTGGAGGAGCGGGATGGGCCG
CCGTTTGCACGTGCTACATCGCCACCACCCCCAATGGAGGAAGACAAAAG
GCAAGAAGATGATGTACAGCAATGTCAGGAGCCACAGCCGCCGCGGCACC
AGCAGCAGCAGGAGCTCGAAGGTGGAGGGGCTGTGTTCTCCCCGCTGGCA
GGCACCGCGCAGTCAACAATTGAGAGGAAGAAAGGGGAGACAGGGAATGA
GCATGAGGAGAACCTCCAGCATCTGGAAACCGATATATCAGCCGGTGCAA
TCCGCACCACTGATTTTGCTGCTGCTGCTGCTGTTCCGGTTCCTTCTTTC
CGTCCGATGTCGCCCTCCTCCAGCTCCTCATCCTCCTCATCCTCCCCCTC
CTTGTTTCCTTCGTCCCCGTCATCGCCATACGCCCAATCATCTCTTTCCA
AACCCTTCATGCGGATGGTGGATAAAGTGGGGAAAGGGAAGGCGGAGGAG
AAAGAAGAAGACGCAGCCATAGCTGAGGAGGAGGAAGGGGAGGAGGAAGG
GAGGGAGGAAGGAGGAGCTTTTCTGACGGGCCCCAGCTTTGAGACAGGCG
TCAGGACGACAACGACGAAGACGACGAAGGCCAAACCGGAACTCAGCAGG
GGGGATGATTGTATCAGTAGCAGCACCGGCACCAGCACAAGCACCAGCAG
CACTCCTGGCGTTTCTTCAACCCCTGCTGCTCCTGCTCCTATGCCTACTC
CTGCTTTTGGTGCTCCTGCTCCTACGCCTACTCCCTCAGATGATGGTGGG
AGgtggcgcatgcaactgacaggagacagttccatgcttatcgaagaggt
ggggggtggcgaggccgaggcctggcccgccctcccacccccctccctcc
tccctctctcccttcttccctttccttttctcctccccgaccgatcccaa
aatttatcgcgcccttattcagCAGCAACAACAACAACAACAACAGCTAT
AACTGCAGCAGCAGCAGCAGCAGCAACATCACTTTGCAAAGCAATCTGCC
ACGCTTCCTAGAAGATGGCCCCCTGCCACTCCGCCGCTCCCTTTCTCCCT
CCTTCCCTCCTTCCCTCCCGCCCACCTGCCTCTCACAACATGCCCGAGCA
GAAGGGGACGGGAAAATGGAGGCCAAGAAGGGAAGGAAGGCGAAGGGAGA
GGAAGAGGAGGACGGCGGGTGGAAGGAGCTGCTGGCGATCGAGGCGTTGA
TACAGGAAATGACCGAGGGTATTGTTGTCGATGGCGCCCTCCCTCCTTCC
CGTCCTCCCCCCCGCCTTCCCTCCCGCCCTTCGCCCTTCTCTGCATCTTC
CTTGAAGCTCTCGTCTCATTCGCAGAAGATAGGCGGCGACAGCAGCAGCA
GCAGCAGCAGCAGGGATGAAACGGGCAAGAGGATAATTCCCATCATAGAA
CGGCAGCAGCAGCAGCAGCAGCGACAACCACAAAGCCGCAACCCGCTCTC
CTCCTACTTGCCTCCTCCTTCCTCCTCCTCCTTCTCCTCCTCCTCCCCCG
CTTCCCCCACCTCCTCATTCTCCTCCTCCTCTTCCTCCTCCTCTCTATCC
TGGGCAGACCGACGCTTACGACAGCAGCGGCTCGACGACCGGCTGCAGGC
CCTCAACGTCTCTATTGCTGGGATCATGCACGACCTGAGGAGAAAGGGCA
GGAGGGCGGGAGGGAGGGAGTGGTGA
back to top

protein sequence of NO02G00400.1

>NO02G00400.1-protein ID=NO02G00400.1-protein|Name=NO02G00400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1060bp
MVQRQGLRALVTFLSISSMVCILLSVFIPGINWFGKRKLVIFEDVEGNYI
EITSIFTFGFLRTTQSIITEMDQEIFRQDGYHHWCDGITQDMPSETQRRL
CELQAKVLISTLVYLALAFILSVTAVFARPRQKTNFRHLLYALACISLGQ
VVAGSMMGWSWIMIKNTLEEYFSTAYVEVNNLRMTLTWGWYLALFSCLAA
AVVCPVSLYMACTVFGGYAEKAVEKGRKGIDKDLHPQPHRGTRVIPPTGE
VQMRDLSPFTRHSCRVGSGGEGKEGEQVRMHEAGVGLDLCLLSACNKARG
RRNLTMYKRHASPAGLIGTSLCPVAAEDADPQKQQVRPSSSSSSRWSPKL
VLPPPSTSSSPHSPASASRHSPPAGMETQEALLTRIYHREWYSNVPVHFA
WPVPDQKRGRPSTLSSSCSSCPPSLSSPPAPKQINCESDTARMEAWQTAH
SSYLDNARRSRGGNGRGGGKEGGKGGQRESDTGEEGWMPRGTDCRAVEEE
RKARRMKYEEDLAILWEERLKGARDKEEGRRKDIGKEKEEGWWVDLNAPV
SVEERDGPPFARATSPPPPMEEDKRQEDDVQQCQEPQPPRHQQQQELEGG
GAVFSPLAGTAQSTIERKKGETGNEHEENLQHLETDISAGAIRTTDFAAA
AAVPVPSFRPMSPSSSSSSSSSSPSLFPSSPSSPYAQSSLSKPFMRMVDK
VGKGKAEEKEEDAAIAEEEEGEEEGREEGGAFLTGPSFETGVRTTTTKTT
KAKPELSRGDDCISSSTGTSTSTSSTPGVSSTPAAPAPMPTPAFGAPAPT
PTPSDDGGSSNNNNNNSYNCSSSSSSNITLQSNLPRFLEDGPLPLRRSLS
PSFPPSLPPTCLSQHARAEGDGKMEAKKGRKAKGEEEEDGGWKELLAIEA
LIQEMTEGIVVDGALPPSRPPPRLPSRPSPFSASSLKLSSHSQKIGGDSS
SSSSSRDETGKRIIPIIERQQQQQQRQPQSRNPLSSYLPPPSSSSFSSSS
PASPTSSFSSSSSSSSLSWADRRLRQQRLDDRLQALNVSIAGIMHDLRRK
GRRAGGREW*
back to top
Synonyms
Publications