NO02G00060, NO02G00060 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO02G00060 vs. NCBI_GenBank
Match: EWM30669.1 (hypothetical protein Naga_100091g8 [Nannochloropsis gaditana]) HSP 1 Score: 339.0 bits (868), Expect = 2.100e-89 Identity = 204/401 (50.87%), Postives = 246/401 (61.35%), Query Frame = 0 Query: 20 MVGVACVGLGSLISSAQSESVLSDPASEAAYSY-----KFPVAFPSVANAIRNGHVIVLDTMLSDRELHAAREDVDILLQQGGGTFAANANRDSSVRRDSVVWITGQEKGVGPGLKHAVALLRGLAHEFAATPAYDKSVLWVQSAAQLACYAGDSQAHYTPHLDASTDSIWTLGLSAWLRARAYRERTITAILYLNDKNWDKDTMGGCLRCHLPNSSSKTGCDSGGVAVASDGGGSALGRMRTKQQPMLQDGDAIDTTATNDVTVPAMPSVLFSGDTTATGGAGSAFDKNETHARSPDSDAPAAAVGASITATIHAASADGAANANAYTVAADLPPAAALAVIGIDNASAAMATTEHDVAPYGGRLVLFDSAAILHEVLPSHNEGEPRIALTVWISDRRER 416 M+ VA +G+L+ SAQSE+V S+PA EAAY + FP+AF ++A A+R GHV+V+D ++SD+EL AA+ DV LL+QG G FA NAN DSSVR DSV W+TG+E G GPGLKHAVALL+GLAHEF+ TP Y KSVL+VQSAAQLACYAGD QA Y PHLDAST+S+WTLGL+AWLRARAYRERTITAILYLNDK+WD D GGCLRC+LP++ A G M K PS L G+ AT +GS S D P A HA G A V+ + A + D S ++ DVAP GGRLVLFDS A+LHEVLPS+ +G RIALTVW+SDR+ R Sbjct: 1 MLAVAGATMGTLVMSAQSEAVCSNPACEAAYEHVRNGRPFPIAFAAIARALRRGHVVVIDPVMSDQELLAAQNDVKALLRQGDGAFAVNANDDSSVRLDSVTWVTGEEAGTGPGLKHAVALLKGLAHEFSRTPEYSKSVLFVQSAAQLACYAGDGQAFYAPHLDASTESVWTLGLNAWLRARAYRERTITAILYLNDKDWDADLSGGCLRCYLPSA-------------------LAQGGMHDK------------------------PSGL--GELPATTTSGS-------RRISQDRSKPKA----------HAYEICGDHGITALPVSLESDRAKS-----DDKVSGSLGVMPRDVAPRGGRLVLFDSGAVLHEVLPSYKKGGQRIALTVWVSDRQSR 334
BLAST of NO02G00060 vs. NCBI_GenBank
Match: XP_005855493.1 (egl nine 1-like protein, partial [Nannochloropsis gaditana CCMP526] >XP_005855665.1 egl nine 1-like protein, partial [Nannochloropsis gaditana CCMP526] >EKU20697.1 egl nine 1-like protein, partial [Nannochloropsis gaditana CCMP526] >EKU20868.1 egl nine 1-like protein, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 325.9 bits (834), Expect = 1.900e-85 Identity = 201/396 (50.76%), Postives = 241/396 (60.86%), Query Frame = 0 Query: 13 QRAEAAAMVGVACVGLGSLISSAQSESVLSDPASEAAYSY-----KFPVAFPSVANAIRNGHVIVLDTMLSDRELHAAREDVDILLQQGGGTFAANANRDSSVRRDSVVWITGQEKGVGPGLKHAVALLRGLAHEFAATPAYDKSVLWVQSAAQLACYAGDSQAHYTPHLDASTDSIWTLGLSAWLRARAYRERTITAILYLNDKNWDKDTMGGCLRCHLPNSSSKTGCDSGGVAVASDGGGSALGRMRTKQQPMLQDGDAIDTTATNDVTVPAMPSVLFSGDTTATGGAGSAFDKNETHARSPDSDAPAAAVGASITATIHAASADGAANANAYTVAADLPPAAALAVIGIDNASAAMATTEHDVAPYGGRLVLFDSAAILHEVLPSHNEGEPRI 404 Q AEAAAM+ VA +G+L+ SAQSE+V S+PA EAAY + FP+AF ++A A+R GHV+V+D ++SD+EL AA+ DV LL+QG G FA NAN DSSVR DSV W+TG+E G GPGLKHAVALL+GLAHEF+ TP Y KSVL+VQSAAQLACYAGD QA Y PHLDAST+S+WTLGL+AWLRARAYRERTITAILYLNDK+WD D GGCLRC+LP++ A G M K PS L G+ AT +GS S D P A HA G A V+ + A + D S ++ DVAP GGRLVLFDS A+LHEVLPS+ +G RI Sbjct: 1 QGAEAAAMLAVAGATMGTLVMSAQSEAVCSNPACEAAYEHVRNGRPFPIAFAAIARALRRGHVVVIDPVMSDQELLAAQNDVKALLRQGDGAFAVNANDDSSVRLDSVTWVTGEEAGTGPGLKHAVALLKGLAHEFSRTPEYSKSVLFVQSAAQLACYAGDGQAFYAPHLDASTESVWTLGLNAWLRARAYRERTITAILYLNDKDWDADLSGGCLRCYLPSA-------------------LAQGGMHDK------------------------PSGL--GELPATTTSGS-------RRISQDRSKPKA----------HAYEICGDHGITALPVSLESDRAKS-----DDKVSGSLGVMPRDVAPRGGRLVLFDSGAVLHEVLPSYKKGGQRI 329
BLAST of NO02G00060 vs. NCBI_GenBank
Match: XP_002288441.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED93877.1 predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 75.9 bits (185), Expect = 3.400e-10 Identity = 59/207 (28.50%), Postives = 84/207 (40.58%), Query Frame = 0 Query: 47 EAAYSYKFPVAFPSVANAIRNGHVIVLDTMLSDRELHAAREDV-------------------DILLQQGGGTFAANANRDSSVRRDSVVWI-------TGQEKGVGPGLKHAVALLRGLAHEFAATPAYDKSVLWVQSAAQLACYAGDSQAHYTPHLDASTDSIWTLGLSAWLRARAYRERTITAILYLNDKNWDKDTMGGCLRCHL 228 EAAY+ + S + ++V+ LS + L AR D+ + + +G G + VR D V W+ +E +G L H + L+RG A D V QLA Y GD + Y HLD S+ LGL + R +R R IT ILYLND + ++ GG L+C L Sbjct: 77 EAAYAPSNQLITSSHVRTLERDGIVVIPNALSAKSLIDARADLARYASKKHMFERSGVGGNETMPIGEGSGNGSLIDGDGDLVRNDIVSWLRPNRSIDESEESDIGASLAHCIDLIRGAAFSLNRFDYADSHSHQVPLQCQLAMYKGDGKCGYARHLDRCDSSLQELGLLEYFRLSDFRGRAITVILYLNDASRTEED-GGALKCWL 282
BLAST of NO02G00060 vs. NCBI_GenBank
Match: XP_002182567.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC45854.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 74.7 bits (182), Expect = 7.500e-10 Identity = 60/214 (28.04%), Postives = 90/214 (42.06%), Query Frame = 0 Query: 58 FPSVANAIRNGHV--------IVLDTMLSDRELHAAREDVDILLQQGG-------GTFAANANRDSSVRRDSVVWITG------------------------QEKG-------VGPGLKHAVALLRGLAHEFAATPAYDKSVLWVQSAAQLACYAGDSQAHYTPHLDASTDSIWTLGLSAWLRARAYRERTITAILYLNDKNWDKDTMGGCLRC 226 F + +N I+ HV +V++ ++ L AR ++ ++G G FA + N D VR+D + W+ Q+K +G L +++ +LRG+ V QLA Y G+ A Y HLD S++ LG+ WLR YRER IT ILYLN+ N ++ GG LRC Sbjct: 52 FDASSNLIKPHHVRELETKGIVVIENAVTATTLRGARSNIRDFQKEGSIWTNTRVGGFAPSGN-DPDVRQDLIAWVRSSNVSDDEASTRSHHVETQGSLLIVQDKNNRQENSPLGKDLLYSIQILRGIPFALEQCGYSASKNHRVPRQCQLAMYPGNGSASYERHLDQCDASVYDLGILEWLRLSDYRERAITTILYLNEPN-RPESHGGALRC 263
BLAST of NO02G00060 vs. NCBI_GenBank
Match: EJK64904.1 (hypothetical protein THAOC_14308 [Thalassiosira oceanica]) HSP 1 Score: 72.4 bits (176), Expect = 3.700e-9 Identity = 54/160 (33.75%), Postives = 76/160 (47.50%), Query Frame = 0 Query: 76 MLSDRELHAAREDVDILLQQGGGTFAANANRDSSVRRDSVVWITGQE----KGVGPGLKHAVALLRGLAHEFAATPAYDKSVLWVQSAAQLACYAGDSQAHYTPHLDASTDSIWTLGLSAWLRARAYRERTITAILYLNDKNWDKDTMGGCLRCHLPNSS 232 + D +L ARE+V L + + D+SVR+D ++ + + + G L H + LLRG+ + V QL+ YA D Y HLD ++ +GL WLRA YR R ITAILYLN ++WD GG LR N+S Sbjct: 122 LTDDVDLRYARENVKAL-----RSHMEKSVNDTSVRQDMILSVREGDHLDGRDHGDALVHCIRLLRGIPYLLGKFEYSKSHSFIVPRQCQLSQYAPDGSI-YVRHLDRCNSTLQEMGLLGWLRASDYRGRVITAILYLNARDWDG---GGELRLFDSNNS 272 The following BLAST results are available for this feature:
BLAST of NO02G00060 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 5
Relationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO02G00060 ID=NO02G00060|Name=NO02G00060|organism=Nannochloropsis oceanica|type=gene|length=3287bpback to top protein sequence of NO02G00060.1 >NO02G00060.1-protein ID=NO02G00060.1-protein|Name=NO02G00060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=416bpback to top Synonyms
Publications
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