NO02G00060, NO02G00060 (gene) Nannochloropsis oceanica

Overview
NameNO02G00060
Unique NameNO02G00060
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3287
Alignment locationchr2:16593..19879 +

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Properties
Property NameValue
DescriptionEgl nine 1-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:16593..19879 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
GO:0031418L-ascorbic acid binding
GO:0016705oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0005506iron ion binding
GO:0031418L-ascorbic acid binding
GO:0016705oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0016491oxidoreductase activity
GO:0005506iron ion binding
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0055114oxidation-reduction process
Vocabulary: INTERPRO
TermDefinition
IPR005123Oxoglu/Fe-dep_dioxygenase
IPR006620Pro_4_hyd_alph
Homology
BLAST of NO02G00060 vs. NCBI_GenBank
Match: EWM30669.1 (hypothetical protein Naga_100091g8 [Nannochloropsis gaditana])

HSP 1 Score: 339.0 bits (868), Expect = 2.100e-89
Identity = 204/401 (50.87%), Postives = 246/401 (61.35%), Query Frame = 0
Query:   20 MVGVACVGLGSLISSAQSESVLSDPASEAAYSY-----KFPVAFPSVANAIRNGHVIVLDTMLSDRELHAAREDVDILLQQGGGTFAANANRDSSVRRDSVVWITGQEKGVGPGLKHAVALLRGLAHEFAATPAYDKSVLWVQSAAQLACYAGDSQAHYTPHLDASTDSIWTLGLSAWLRARAYRERTITAILYLNDKNWDKDTMGGCLRCHLPNSSSKTGCDSGGVAVASDGGGSALGRMRTKQQPMLQDGDAIDTTATNDVTVPAMPSVLFSGDTTATGGAGSAFDKNETHARSPDSDAPAAAVGASITATIHAASADGAANANAYTVAADLPPAAALAVIGIDNASAAMATTEHDVAPYGGRLVLFDSAAILHEVLPSHNEGEPRIALTVWISDRRER 416
            M+ VA   +G+L+ SAQSE+V S+PA EAAY +      FP+AF ++A A+R GHV+V+D ++SD+EL AA+ DV  LL+QG G FA NAN DSSVR DSV W+TG+E G GPGLKHAVALL+GLAHEF+ TP Y KSVL+VQSAAQLACYAGD QA Y PHLDAST+S+WTLGL+AWLRARAYRERTITAILYLNDK+WD D  GGCLRC+LP++                    A G M  K                        PS L  G+  AT  +GS          S D   P A          HA    G     A  V+ +   A +      D  S ++     DVAP GGRLVLFDS A+LHEVLPS+ +G  RIALTVW+SDR+ R
Sbjct:    1 MLAVAGATMGTLVMSAQSEAVCSNPACEAAYEHVRNGRPFPIAFAAIARALRRGHVVVIDPVMSDQELLAAQNDVKALLRQGDGAFAVNANDDSSVRLDSVTWVTGEEAGTGPGLKHAVALLKGLAHEFSRTPEYSKSVLFVQSAAQLACYAGDGQAFYAPHLDASTESVWTLGLNAWLRARAYRERTITAILYLNDKDWDADLSGGCLRCYLPSA-------------------LAQGGMHDK------------------------PSGL--GELPATTTSGS-------RRISQDRSKPKA----------HAYEICGDHGITALPVSLESDRAKS-----DDKVSGSLGVMPRDVAPRGGRLVLFDSGAVLHEVLPSYKKGGQRIALTVWVSDRQSR 334          
BLAST of NO02G00060 vs. NCBI_GenBank
Match: XP_005855493.1 (egl nine 1-like protein, partial [Nannochloropsis gaditana CCMP526] >XP_005855665.1 egl nine 1-like protein, partial [Nannochloropsis gaditana CCMP526] >EKU20697.1 egl nine 1-like protein, partial [Nannochloropsis gaditana CCMP526] >EKU20868.1 egl nine 1-like protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 325.9 bits (834), Expect = 1.900e-85
Identity = 201/396 (50.76%), Postives = 241/396 (60.86%), Query Frame = 0
Query:   13 QRAEAAAMVGVACVGLGSLISSAQSESVLSDPASEAAYSY-----KFPVAFPSVANAIRNGHVIVLDTMLSDRELHAAREDVDILLQQGGGTFAANANRDSSVRRDSVVWITGQEKGVGPGLKHAVALLRGLAHEFAATPAYDKSVLWVQSAAQLACYAGDSQAHYTPHLDASTDSIWTLGLSAWLRARAYRERTITAILYLNDKNWDKDTMGGCLRCHLPNSSSKTGCDSGGVAVASDGGGSALGRMRTKQQPMLQDGDAIDTTATNDVTVPAMPSVLFSGDTTATGGAGSAFDKNETHARSPDSDAPAAAVGASITATIHAASADGAANANAYTVAADLPPAAALAVIGIDNASAAMATTEHDVAPYGGRLVLFDSAAILHEVLPSHNEGEPRI 404
            Q AEAAAM+ VA   +G+L+ SAQSE+V S+PA EAAY +      FP+AF ++A A+R GHV+V+D ++SD+EL AA+ DV  LL+QG G FA NAN DSSVR DSV W+TG+E G GPGLKHAVALL+GLAHEF+ TP Y KSVL+VQSAAQLACYAGD QA Y PHLDAST+S+WTLGL+AWLRARAYRERTITAILYLNDK+WD D  GGCLRC+LP++                    A G M  K                        PS L  G+  AT  +GS          S D   P A          HA    G     A  V+ +   A +      D  S ++     DVAP GGRLVLFDS A+LHEVLPS+ +G  RI
Sbjct:    1 QGAEAAAMLAVAGATMGTLVMSAQSEAVCSNPACEAAYEHVRNGRPFPIAFAAIARALRRGHVVVIDPVMSDQELLAAQNDVKALLRQGDGAFAVNANDDSSVRLDSVTWVTGEEAGTGPGLKHAVALLKGLAHEFSRTPEYSKSVLFVQSAAQLACYAGDGQAFYAPHLDASTESVWTLGLNAWLRARAYRERTITAILYLNDKDWDADLSGGCLRCYLPSA-------------------LAQGGMHDK------------------------PSGL--GELPATTTSGS-------RRISQDRSKPKA----------HAYEICGDHGITALPVSLESDRAKS-----DDKVSGSLGVMPRDVAPRGGRLVLFDSGAVLHEVLPSYKKGGQRI 329          
BLAST of NO02G00060 vs. NCBI_GenBank
Match: XP_002288441.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED93877.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 75.9 bits (185), Expect = 3.400e-10
Identity = 59/207 (28.50%), Postives = 84/207 (40.58%), Query Frame = 0
Query:   47 EAAYSYKFPVAFPSVANAIRNGHVIVLDTMLSDRELHAAREDV-------------------DILLQQGGGTFAANANRDSSVRRDSVVWI-------TGQEKGVGPGLKHAVALLRGLAHEFAATPAYDKSVLWVQSAAQLACYAGDSQAHYTPHLDASTDSIWTLGLSAWLRARAYRERTITAILYLNDKNWDKDTMGGCLRCHL 228
            EAAY+    +   S    +    ++V+   LS + L  AR D+                    + + +G G  +        VR D V W+         +E  +G  L H + L+RG A         D     V    QLA Y GD +  Y  HLD    S+  LGL  + R   +R R IT ILYLND +  ++  GG L+C L
Sbjct:   77 EAAYAPSNQLITSSHVRTLERDGIVVIPNALSAKSLIDARADLARYASKKHMFERSGVGGNETMPIGEGSGNGSLIDGDGDLVRNDIVSWLRPNRSIDESEESDIGASLAHCIDLIRGAAFSLNRFDYADSHSHQVPLQCQLAMYKGDGKCGYARHLDRCDSSLQELGLLEYFRLSDFRGRAITVILYLNDASRTEED-GGALKCWL 282          
BLAST of NO02G00060 vs. NCBI_GenBank
Match: XP_002182567.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC45854.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 74.7 bits (182), Expect = 7.500e-10
Identity = 60/214 (28.04%), Postives = 90/214 (42.06%), Query Frame = 0
Query:   58 FPSVANAIRNGHV--------IVLDTMLSDRELHAAREDVDILLQQGG-------GTFAANANRDSSVRRDSVVWITG------------------------QEKG-------VGPGLKHAVALLRGLAHEFAATPAYDKSVLWVQSAAQLACYAGDSQAHYTPHLDASTDSIWTLGLSAWLRARAYRERTITAILYLNDKNWDKDTMGGCLRC 226
            F + +N I+  HV        +V++  ++   L  AR ++    ++G        G FA + N D  VR+D + W+                          Q+K        +G  L +++ +LRG+                V    QLA Y G+  A Y  HLD    S++ LG+  WLR   YRER IT ILYLN+ N   ++ GG LRC
Sbjct:   52 FDASSNLIKPHHVRELETKGIVVIENAVTATTLRGARSNIRDFQKEGSIWTNTRVGGFAPSGN-DPDVRQDLIAWVRSSNVSDDEASTRSHHVETQGSLLIVQDKNNRQENSPLGKDLLYSIQILRGIPFALEQCGYSASKNHRVPRQCQLAMYPGNGSASYERHLDQCDASVYDLGILEWLRLSDYRERAITTILYLNEPN-RPESHGGALRC 263          
BLAST of NO02G00060 vs. NCBI_GenBank
Match: EJK64904.1 (hypothetical protein THAOC_14308 [Thalassiosira oceanica])

HSP 1 Score: 72.4 bits (176), Expect = 3.700e-9
Identity = 54/160 (33.75%), Postives = 76/160 (47.50%), Query Frame = 0
Query:   76 MLSDRELHAAREDVDILLQQGGGTFAANANRDSSVRRDSVVWITGQE----KGVGPGLKHAVALLRGLAHEFAATPAYDKSVLWVQSAAQLACYAGDSQAHYTPHLDASTDSIWTLGLSAWLRARAYRERTITAILYLNDKNWDKDTMGGCLRCHLPNSS 232
            +  D +L  ARE+V  L      +    +  D+SVR+D ++ +   +    +  G  L H + LLRG+ +              V    QL+ YA D    Y  HLD    ++  +GL  WLRA  YR R ITAILYLN ++WD    GG LR    N+S
Sbjct:  122 LTDDVDLRYARENVKAL-----RSHMEKSVNDTSVRQDMILSVREGDHLDGRDHGDALVHCIRLLRGIPYLLGKFEYSKSHSFIVPRQCQLSQYAPDGSI-YVRHLDRCNSTLQEMGLLGWLRASDYRGRVITAILYLNARDWDG---GGELRLFDSNNS 272          
The following BLAST results are available for this feature:
BLAST of NO02G00060 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 5
Match NameE-valueIdentityDescription
EWM30669.12.100e-8950.87hypothetical protein Naga_100091g8 [Nannochloropsi... [more]
XP_005855493.11.900e-8550.76egl nine 1-like protein, partial [Nannochloropsis ... [more]
XP_002288441.13.400e-1028.50predicted protein [Thalassiosira pseudonana CCMP13... [more]
XP_002182567.17.500e-1028.04predicted protein [Phaeodactylum tricornutum CCAP ... [more]
EJK64904.13.700e-933.75hypothetical protein THAOC_14308 [Thalassiosira oc... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR068ncniR068Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G00060.1NO02G00060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100091g8gene8Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G00060.1NO02G00060.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G00060 ID=NO02G00060|Name=NO02G00060|organism=Nannochloropsis oceanica|type=gene|length=3287bp
CGATTTATTTTTTTGGACGCCCTACTTGTACTGCCTACCCATCGATAAAA
GGGAATACATTCAGGAGGCTCTTGACCAGCACACACGAGCTAGCAACCAA
AGCACCAATTTCTCCACCTTTACTTCTATGTTAGACATACACGCACTTCC
TCTCAACAATTCGGTCCTTCTATGCACACGATCCCCCTAATGATCTGCAG
CGCTTGCAATGCTTCACGTCCCCGCGCGCGAATGGCACGGTTGTCATCCA
GAAATATATTGGCCAAATTTGGACAGCCCCCTTCAACTTCTCCCATCTGG
CCCCCGTTGCCTTCCTCCCCCCCCAACCCTCCGTCCGTGGTTTCCGTCGC
CAGAAAGTCCCTAAAAGCACAGGCCCCATCATCTCCTATCCTATTCCCTC
GCAGATCCAATGTCTCCAGCTGCAGCATAGCAGTTGTGCTCATCGTACTT
ACTGCAGCAGCTCGGGCCGTCCTCATCTTTCCTCCCTCGACTGACAAGCG
CTCCGCAAGGGCAAGCGCTCCTTCGTTTCCGATGGCATTGCAAGCCAAAT
CTAGCTCCCGCAGCATGGGCATGTGAGCCAGGCAATCAGCCACGGCCCTC
GCCCCTGTGTCGCCAATGCCATTAAATCCAAGATAAAATTCGTCCAGACA
CGGCATGCCACCTCCCGCAGCCAGTCCCTCCGCCACCGACGTGGCCCCGC
AGTCGCCCAATTGATTCAGGTGCAAGTCAAGCTTCAGCAGCCTCTTTAAG
GAAATAGAGCCGAGAGCACCTCCTATGTGCAAGGCGGCAATGGTGCCCAG
ATCATTTTGCGCGAGGCTGAGAGAGGTCAATGGTGCACTGCAGGCCCCGC
ATTTCAGGACCTCACATAAAACGGCAATATGATCTTCTCCCTCCCCACCA
CCGCCTCCATAGTCGTCGCCCCCGATTTGATTGGCACGCACGTAGAGCCC
TTGCAAACCAGAGCGAAACCCCCCTCGCTCTAGGGCCTGTGCCAGAGCAA
GGCATCCCTCGCTTCTCAGCTTGTTATCGAACAGATTGAGGGAACGTACC
GTTTGGAAAAAATTGCCCTCCTCCGCGGCTAGGCGCCCCAATGTAAGGAT
AATATTGGGAGTAAGCTCGGCTGAGGATAAGTCCAAGACGCGAAGGGCTT
TACAAAATGGCAAGCGACGCGTGATGATGTCTTCAACGACGACCACAGTT
AATTGCTTCGATGGACGGAAGAAGGACATGCCGTTCGATATCAAATTGGT
CCCATTTTCGTCCTGTGCGGCACCCAACCCCCGAGCTGCCGAGGTCAAGC
GAGCCACATCTCCTGGCCACATGTAAGCGCAGATCTCATAAAGGAGAGCA
TGGGGGAGGGTGGGCAGGGCGACGAGACGTGGAGGTATTGGTGCTGCTCG
AGCGAAAGGAGTAGGAAGAAAAAGTGGTGGTGACGGTAAGCTCATGATGG
AAAGGTTTTAGCCCTTGGCCTATTTTAAACGGGTGTGTGGTGCTTACTTT
TAGAAATTGTAAGCGTGCGGTGAGACACGTTCGACGTCGAAGCCCGCCGG
CGAGATCCAGTCGCTAATCGTTGCGTCGTCATCGCCCAGCAAAATGCAAC
ATGCAAGAAAGCATACGCTTGAAAACTGACCACGCAAAACAAATCCACAT
GCATCGCCAGTCGTCGTCCACATGGTTTTGGCCTCGATCCGCCGAGCTGC
CACGAGCCAGgtaagtttgtacttccactgaaaagccgtatgccttccct
tatcttccactcttctctcccttttgctttcactaagCGGGCCGAGGCCG
CGGCCATGGTGGGAGTGGCGTGTGTGGGCCTGGGTTCATTAATTTCGTCG
GCACAGAGTGAATCTGTGCTCTCAGATCCTGCCAGCGAAGCCGCCTACTC
GTATAAATTTCCCGTGGCTTTTCCCTCTGTGGCAAATGCCATTCGCAACG
GGCACGTGATTGTGCTGGATACGATGTTGAGCGACCGAGAGCTTCATGCT
GCGCGAGAGGACGTGGATATTTTGCTACAACAAGGTGGCGGTACCTTTGC
GGCGAACGCCAATAGGGACTCGAGCGTGCGGCGCGACTCGGTGGTGTGGA
TAACGGGACAAGAAAAAGGGGTCGGACCTGGATTGAAGCATGCCGTCGCG
TTGCTGCGTGGCCTGGCGCACGAGTTTGCGGCAACGCCTGCCTACGATAA
GAGTGTGTTGTGGGTTCAGTCCGCCGCGCAACTGGCATGCTATGCAGGGG
ACAGCCAAGCCCATTATACACCGCATCTGGATGCCTCCACGGATAGCATC
TGGACCCTCGGTTTGAGTGCCTGGCTTCGTGCCCGGGCCTACCGCGAGAG
GACCATAACGGCGATATTGTACTTAAATGATAAGAATTGGGACAAGGATA
CAATGGGCGGCTGCTTGCGATGTCACTTGCCTAATTCTTCTTCCAAGACT
GGTTGTGATTCGGGTGGTGTTGCTGTTGCATCTGATGGTGGTGGTAGTGC
TCTTGGTCGAATGAGGACGAAGCAGCAGCCGATGTTACAAGACGGTGATG
CCATTGACACTACTGCCACAAATGACGTTACCGTGCCTGCCATGCCTTCT
GTTCTTTTCTCTGGTGATACAACTGCAACTGGTGGCGCGGGTAGCGCTTT
TGATAAGAATGAGACGCACGCCAGGTCACCGGATAGCGATGCTCCTGCAG
CTGCAGTCGGTGCTTCTATCACTGCCACGATTCATGCAGCGTCTGCTGAT
GGCGCAGCCAACGCGAATGCTTATACCGTTGCTGCCGATCTTCCTCCTGC
TGCTGCTCTTGCAGTCATAGGCATTGACAACGCGAGTGCAGCGATGGCGA
CGACAGAACACGACGTTGCTCCGTACGGGGGTCGCTTAGTGCTCTTCGAC
AGTGCTGCCATTCTGCACGAGGTATTGCCGTCGCACAACGAGGGCGAACC
GCGGATAGCACTGACGGTGTGGATTAGCGACCGGCGAGAACGGTAGTTAC
CACACATGGCTGCCAGTTGACGAAAATGAGAAAATGGGATAAATTGATTT
GTAGACCAGAAAGCACAGGAAAGAGAGAGCAGCCTTCATGATGCAGCAAG
TGATTTCCAACACATATGCAGTCACTTCATTGGTTCATAAATTGCGAAGC
CGAAAGGATGACACCGTCAGCCCAGGAAACACGTTGCCACTATTCTTCCC
GTCAGGCAAATAAATACAGGACTGCACATAACAAGTGCAATGCGACAGAG
TGGACCTCCATGCCATGCCATCCAACAGGATTGAATT
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protein sequence of NO02G00060.1

>NO02G00060.1-protein ID=NO02G00060.1-protein|Name=NO02G00060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=416bp
MVLASIRRAATSQRAEAAAMVGVACVGLGSLISSAQSESVLSDPASEAAY
SYKFPVAFPSVANAIRNGHVIVLDTMLSDRELHAAREDVDILLQQGGGTF
AANANRDSSVRRDSVVWITGQEKGVGPGLKHAVALLRGLAHEFAATPAYD
KSVLWVQSAAQLACYAGDSQAHYTPHLDASTDSIWTLGLSAWLRARAYRE
RTITAILYLNDKNWDKDTMGGCLRCHLPNSSSKTGCDSGGVAVASDGGGS
ALGRMRTKQQPMLQDGDAIDTTATNDVTVPAMPSVLFSGDTTATGGAGSA
FDKNETHARSPDSDAPAAAVGASITATIHAASADGAANANAYTVAADLPP
AAALAVIGIDNASAAMATTEHDVAPYGGRLVLFDSAAILHEVLPSHNEGE
PRIALTVWISDRRER*
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Synonyms
Publications