NO01G05930, NO01G05930 (gene) Nannochloropsis oceanica

Overview
NameNO01G05930
Unique NameNO01G05930
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length504
Alignment locationchr1:1683058..1683561 +

Link to JBrowse

Properties
Property NameValue
DescriptionAnkyrin unc44
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1683058..1683561 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO01G05930 vs. NCBI_GenBank
Match: EWM27842.1 (ankyrin unc44 [Nannochloropsis gaditana])

HSP 1 Score: 79.0 bits (193), Expect = 1.600e-11
Identity = 65/146 (44.52%), Postives = 79/146 (54.11%), Query Frame = 0 
Query:    2 ETRGGRVEEEDDDDLGGLTDETIERLCTSEYADDVLRICQKINGSGGHYAGGSGGSGRSSFDMSSTPGMGKGTTLFSLCGGRDGRSRRSSTMTFSGGYSRSNRSSSLAKDSAKGDKDFSTEGATAIADRDRSSSNGVTKASLSDSS 148
            E   G  EEE D +LGGLT+ETIERLC SEYA+DVLRICQK+NGS  +  G     GR S         G G+T+FS    R   S  + T+T  GG     + S+   +     + F TE      DR RSSS GVTK+  SD S
Sbjct:   63 EDNEGIEEEEGDHNLGGLTEETIERLCKSEYANDVLRICQKMNGSSLNTNG-----GRESIGSPLENFKGTGSTIFSDIDDRQDLSNSTLTITTKGGSGLPMKRST--SERVSNIETFLTE------DRGRSSSEGVTKSFPSDPS 195
The following BLAST results are available for this feature:
BLAST of NO01G05930 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27842.11.600e-1144.52ankyrin unc44 [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR008ncniR008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G05930.1NO01G05930.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G05930.1NO01G05930.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G05930 ID=NO01G05930|Name=NO01G05930|organism=Nannochloropsis oceanica|type=gene|length=504bp
ATGGAGACTCGGGGCGGAAGAGTGGAGGAAGAGGACGACGATGACCTGGG
TGGGTTGACAGATGAGACGATTGAGCGGCTGTGCACATCTGAGTACGCCG
ATGACGTTTTGAGAATTTGCCAAAAAATCAATGGCAGTGGTGGACATTAT
GCTGGTGGTTCCGGTGGAAGTGGCAGGAGCAGCTTCGACATGTCATCAAC
ACCGGGCATGGGGAAGGGCACGACCCTCTTTTCTTTGTGTGGTGGTAGAG
ACGGCCGCAGCAGGCGGAGCAGCACCATGACCTTCAGCGGCGGCTACAGT
AGAAGCAACAGAAGCAGCAGCCTAGCCAAGGACAGTGCAAAGGGCGATAA
AGACTTCAGCACGGAAGGAGCGACTGCCATAGCAGATAGGGACCGGAGCA
GTAGCAACGGCGTCACCAAGGCCTCCCTCTCGGATTCCTCCCCCTTTAGT
CCCATCCTCCCCCCCCTCCAGTCCCTCCACCTTCTCCTCCAGCCCTGTCC
TTGA
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protein sequence of NO01G05930.1

>NO01G05930.1-protein ID=NO01G05930.1-protein|Name=NO01G05930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=168bp
METRGGRVEEEDDDDLGGLTDETIERLCTSEYADDVLRICQKINGSGGHY
AGGSGGSGRSSFDMSSTPGMGKGTTLFSLCGGRDGRSRRSSTMTFSGGYS
RSNRSSSLAKDSAKGDKDFSTEGATAIADRDRSSSNGVTKASLSDSSPFS
PILPPLQSLHLLLQPCP*
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Synonyms
Publications