NO01G05870, NO01G05870 (gene) Nannochloropsis oceanica

Overview
NameNO01G05870
Unique NameNO01G05870
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1420
Alignment locationchr1:1651439..1652858 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1651439..1652858 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO01G05870 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL001nonsL001Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR008ncniR008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR059ngnoR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006440NSK006440Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G05870.1NO01G05870.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|614862gene_11735Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G05870.1NO01G05870.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G05870 ID=NO01G05870|Name=NO01G05870|organism=Nannochloropsis oceanica|type=gene|length=1420bp
CTTCACTTTCTTCTTGCTTCCGTCTCATTCCACTCTCTCACTCTCCCATC
TACCACACCTAATCCACTTACACACATCTTTATGGCCAGCACACAAAATA
CAGCACCAGCTGATAAGCCATGGACGCTAAATCCTTTTCCACACCTGTTG
CCAGCTTCACCGCCGCTGCCAAACCTTCCCCTTTATCCTCATCTCCCTCC
TCCCTCCCCTCACCTTCTCCCTCCTCTCCCACGGCGCAGCCGCAGAAGCC
ACTCTACAAGgttcgtgtatgcgtgtgatcgtcggacgataatatgtggg
gaacaattttagaggatgaggtaaaattgaagtaaaagagaggcaggaca
aaggggaaatgaagccccggtctccgctcatcgtccttctcactagcctt
tctttgttctaatcaacagCCTTTTTCTTCTGAGGAGCACACTCGCTTTT
TGACCGCATTAGATAGCCTCCTTGCATCTTCATCTTCTCTCCTCTCCACG
AGTCCTCTTACTGAGAACGAAAAGCAGCAAGCATGGACAGGACTTGAGTG
GTCCGATCTGGCGGCTAGAGTAGGAAACGAGCGAAGCGTGATGGAGgtaa
gaagattgcctccatgaagccaaaagaggacaaactgactggacgtcaga
aaaaagaaaagatgggtttcaggagcatcacctagctcacccctgagtca
tccttctctacccctccatctcgcccgcctcccctgcagGTGAAGCTACA
CGCCCACGAGTGTTTCCTCCGCCTGCAAGCAAAAATGGGCGCATCCCCCG
AGTCCTCCCCTTCCCACCTCTCCCCCGCCCTCTCGGCTGGACAAAAGGTG
CCACAGCAATGCACTAAGAAGAAGGAAGAGGAAGCTGGAGAGGACGAGGA
AGTGGGGATGGAGGCGGGGACCTCGATGGAGGAGCAGGAGCGAGACGAGA
AGAAAGTGGAAGAGGGAGAAGAGGGGAAAACAATGCACGTTCAACAGGTG
GAGGAAGTACAAATGCAGAAAGAGGAAAAGAGAGAGAAAAGAACCGAGGC
GCACGAGGAGGGGCAGGAGAAGAAGGAGAACGAGAAGGAGGAGAAGGAGG
GAGAGACGGGCGAGGGGATGTTGCATGAAAAGAAAGAGGAGGAGGAGGAC
GCGCCAGCAGCAAGGGACGTGGAGATGGTGGTGGCGATGACGGTGGAGGC
AGAGGAGCCTGACGAGATGATGAGAGAGAAGAAGGAGAAAAAGCAGGAGC
AGAAGATGGCGGAGAAAGAGAAGGAGGATGATGTGGCGAAGGAGGAGACG
GTAGGGGGGAAGCGGAAGGCGGGCGACAAGATGGAAGGATGTGATGCGAC
TGCTGGTGCTTCGACGGCTGTCCTCTCTGCAAAACGCGCCCACAGTCGCA
GTAATGACACGATCGTTTAG
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protein sequence of NO01G05870.1

>NO01G05870.1-protein ID=NO01G05870.1-protein|Name=NO01G05870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=333bp
MDAKSFSTPVASFTAAAKPSPLSSSPSSLPSPSPSSPTAQPQKPLYKPFS
SEEHTRFLTALDSLLASSSSLLSTSPLTENEKQQAWTGLEWSDLAARVGN
ERSVMEVKLHAHECFLRLQAKMGASPESSPSHLSPALSAGQKVPQQCTKK
KEEEAGEDEEVGMEAGTSMEEQERDEKKVEEGEEGKTMHVQQVEEVQMQK
EEKREKRTEAHEEGQEKKENEKEEKEGETGEGMLHEKKEEEEDAPAARDV
EMVVAMTVEAEEPDEMMREKKEKKQEQKMAEKEKEDDVAKEETVGGKRKA
GDKMEGCDATAGASTAVLSAKRAHSRSNDTIV*
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Synonyms
Publications