NO01G05680, NO01G05680 (gene) Nannochloropsis oceanica

Overview
NameNO01G05680
Unique NameNO01G05680
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1532
Alignment locationchr1:1584567..1586098 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1584567..1586098 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO01G05680 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL001nonsL001Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR059ngnoR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G05680.1NO01G05680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|658239gene_599Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G05680.1NO01G05680.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G05680 ID=NO01G05680|Name=NO01G05680|organism=Nannochloropsis oceanica|type=gene|length=1532bp
AGCGGGCTGGCCTTCTTCGGGCCAGCACTGGGATAATACCTCTATCACGA
GGCTGCGGCATTAGAAAGAGGAAGAGGAGCAGCAGCAGGGAGGCCTTGCT
TCTTCCTCCTTCATCCTTACCATTTAAACCCCGCGAGCCTCATCTAGCGA
ACGCGTCAAAGCCACCACACAGGCACCCCCACTCATTCTCCTCCTAGCCA
ACAAAAATGTACCGACACGGGTGTGTCTCGTCATCTTTCCTCTTCCTCCT
CATTCTCCTCCTCTTCCTCCTCCTTTCGTCCACCAACGCCTTCATCTGGC
GGGCCGGCCTCCTTCGCCTAGTCAAGCGCGGAAAAGGAGAAACACCGACC
CCCTCGCCTTCCATCTCTCCTCCTCCGTCCCTCTCTAACCCCTCCCTTGC
CACACCGAATATTGCACTGTCCCCCGACGCTGCCGCCGACGCCACTGCCC
TCCAAGCACCGGCGGCAGCAGTTGCAAGGGCACCAGCACCAGCACCAGCA
CCAGAAACAGCACCATCACCAGACACTCAGCATTTCCAAGCGAGGAAAAT
CGATGAGAGGGATAGAATGGACGGGAAACAATCGGACGGGGACAGCAAGC
AGGACAACAAGGAGGATGAGGAGGAGGCCGAGCGGTTGCTACGACAGCTG
GAGCAAGAAGGAGAATGGGAGAGGCGGCTCAAGACCCTCCAGGCGGAGAT
GGCCGCAGCCCGCAAGGCGGAACAAGAAGCGACGGCAGCCGTCAAGGAGA
AGGAGAAAGAGGTCCAGGGCCTTGGCAAAAATCTGTCAGCCTTGCAGAAG
AAGATGGAGACGGCAATAGCAGCAACAGCAGCAGCAACAGCAGCAGCAGC
AGCGCGGGAGGCCTCGTTGAAGAAGGAGGTGGAGGATACGAGGAAGGAAT
TCAAGGAAAGCTTGGCAGCAGCGGTGCTGAAACACGCCTCGCTCCAGCAG
GCCTTCGAAAAAGAGAAGGCGGCGGCGGCACGAGCTCTAGTGGAGATGAA
GAAGAAAGTGGAGGAAGGAAAGGAGGCCATGGAGCAAGTGCGAACCGCGG
CAGAGGAGGAAAAGAAGCAGTGGCTACGAAAAGCCAAGCAAGGACAAGAG
ATCATCGTGCAGCTGCGGAAATATGTAGAGGAGCTGGAGGGAGGGAGGGA
GAAGGCGAAGGAGGAGCTTCGACAGGTGCGCGAGGAGAAGGCAGCAGGAA
TGGCGGAACGGAGGCGGATGGAGGTGGAGGGGAGGGCGGCCGAGGAGCGG
TGGGCACGCCAAATGGAACGGAAGGAGGGAGAGGTGCGAATCCTGCAAGA
GCGGATTTCTGTCGAGCTTCTCCCCGCTGCGAGGAGATGGGGAAAAATCA
GGAGGGGGGCAGGGCCCCTGCTGCTGCTGCTGCTGTCGGCCGGGCCGGGG
GTGAGTCCCCTGGTGCAGTCGTTGAGTGTGGCGTGGGCAGTGGGAGGGTG
GGTGTATGGAGGGAGGGAGGGGGGAGGGAGGGGGGGAGGGAGGGAGGGAG
GGCTTGGAAGCGAGCGGTGGTGGCGGGGCTAG
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protein sequence of NO01G05680.1

>NO01G05680.1-protein ID=NO01G05680.1-protein|Name=NO01G05680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=442bp
MYRHGCVSSSFLFLLILLLFLLLSSTNAFIWRAGLLRLVKRGKGETPTPS
PSISPPPSLSNPSLATPNIALSPDAAADATALQAPAAAVARAPAPAPAPE
TAPSPDTQHFQARKIDERDRMDGKQSDGDSKQDNKEDEEEAERLLRQLEQ
EGEWERRLKTLQAEMAAARKAEQEATAAVKEKEKEVQGLGKNLSALQKKM
ETAIAATAAATAAAAAREASLKKEVEDTRKEFKESLAAAVLKHASLQQAF
EKEKAAAARALVEMKKKVEEGKEAMEQVRTAAEEEKKQWLRKAKQGQEII
VQLRKYVEELEGGREKAKEELRQVREEKAAGMAERRRMEVEGRAAEERWA
RQMERKEGEVRILQERISVELLPAARRWGKIRRGAGPLLLLLLSAGPGVS
PLVQSLSVAWAVGGWVYGGREGGGRGGGREGGLGSERWWRG*
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Synonyms
Publications