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Properties
| Property Name | Value |
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| Description | Ribonuclease Zc3h12a-like protein |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr1 | genome | chr1:1562736..1565428 - |
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR021869 | RNase_Zc3h12 |
Homology
BLAST of NO01G05630 vs. NCBI_GenBank
Match: EWM22776.1 (Ribonuclease Zc3h12a-like protein [Nannochloropsis gaditana]) HSP 1 Score: 129.0 bits (323), Expect = 4.300e-26 Identity = 68/108 (62.96%), Postives = 77/108 (71.30%), Query Frame = 0
Query: 406 MHDAPDTSSACQGRIPLNSRIDANRIAAAIEYFRQRNVGVAAFIPAYVLRRKGPA--SASAKGPGSENVMMQTETQEVLQSLVDSRRLATVPPNDNDDLYILEFAREK 512
MHDAP+ + G PLN+RIDA+RIA+AI YFR R++GVAAFIPAY LRRKGP MQTE QE LQS+VD R LAT+PP DNDDLYILEFAREK
Sbjct: 1 MHDAPEDAVTTSGPAPLNARIDASRIASAISYFRGRSIGVAAFIPAYALRRKGPGXXXXXXXXXXXXXXXMQTEAQESLQSMVDRRWLATIPPTDNDDLYILEFAREK 108
The following BLAST results are available for this feature:
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO01G05630 ID=NO01G05630|Name=NO01G05630|organism=Nannochloropsis oceanica|type=gene|length=2693bp
CATCGAAGTAGTCGTACTGCCTGTGTGGTGTGTGTGAAACAAAAGGCGCT
GTGTGAGCTTGTGTGTGGAAGTGGAGAGACATGTCCAAGCACGGAGATAC
GAGGTAGTCTCGGGTATCAACTGGGTTGCGCGAAGGCGTGCCCAGAGTTC
GAACGTCAAGGCCTTGGGCCAAGCGCGAACAGCGTGCATGCACACATGCA
TCAATTTTTCCACAAAACACATATCAAACAACAGGGGCGAGGCCCTCCAG
AGCCAGTGAGGCAGCCAGGTGCAAGGGCAGGGGCCAGTTTGGGTAAGCGT
GGAGATTGATGCCTGTCTCGTCCCCTGGCGGAAGAAGTCCTGCCACTCCT
ACAACAAATTCCTCTTCCTCCTCATTCTCCGCCCACGCCACCGGTGCCAG
CACCACAGCAAGCAACATGGCTGTGGAGGCCCCCCGGACTCTGTATAAGA
CCTCGCTGGGGAATATCGTGCATGCGGTGGAAGGAGAGGAGACGGGTGGT
GGCGATGGAGGGGCGAACCAAACCACCAACTCCACAAGCTCAACGCATGT
CAGACGCCGGAAAGGCCATTTAATCACGGAGGAAGACGTGCATGGGAACG
TGGTGCGCGTGAGTCGGGCTCCGGTTACCAAGAAGCGGATGCGGTTTCAG
GCGGGGTCAGGGGATGTGCGGATGGCGACGGACTCGAAGAGGGAGGAGGA
GGGGGAGGGAGAGGATGAGCGGAGGATAGCGAGTCACGGGCACGACCTGC
CGCCGGCTTCTTTTATCTTCCCTCCACATAACTCGCAGCAGCAGTACCAC
TATGGGCAGCGGCAGGATGAGGAGCATCACCGACATCAACACTACCAGCA
GCAGCCGCAGCACAACCACCACCTCCTGATGCAGCAGCAACAGCAACAGC
AGTGCGAGGATCAGCAGCGACTTCAGTATTCACGGTACCAGCAACATCAC
TTGGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACA
GCAACAACAACAACCACATGGACAACAGCTTTACCACCAACAACAACAAC
AACACCACCAGCAGCAGCAGCAGCACTGCCAGCAAGAGGTAGAAGATGAA
GGGAACACTGAGATGGAAATCGATGCATCTGCCTCTGCTGCACCTCCACT
TCCATCTCCTCCTCGAGCAGTCTTGTCGGCGCATCGAACCCTACCTCCTC
CTCCAGGTGACGCAAAGTCGTCGTCATCATCCTCCTCTTCCTCCCCCTCC
TCTTCATGTTCGGGTTTTTTGTTCTCGTCTTCTTCAAGCCATCCCCCCGA
TACGATGTCCCACCAATTAAAAGCACGAGCACAAACAGCAGCAGGAGAAG
CACCGGAAGCTGCAAAACCCGTCACAGTCTTCTCTACCTCCGTCCCTGCC
CAGATAGCCACGAATCCAGTAGCGGCCTGTCATGCATCTCTCCCCCCTCC
CTCTATCAACGCCCCACCCTCCCCTGACAGGTCTATTCGCATCAAGgtag
gttcttgaggtgctctcttcccagatttatcacacacacacacacataca
cactttccctcttcttcatttctccttttctcaaccgcccgcccaccctc
tctatctccctccttccccccgtccctcttcactcagGTTGTGATCGACG
CAGCCAATGTGGGCATGCATGACGCCCCCGATACCTCCAGCGCGTGCCAG
GGCCGAATCCCCCTCAATTCCCGCATCGACGCCAACCGAATCGCGGCCGC
CATCGAGTATTTCCGCCAGCGCAACGTGGGTGTCGCGGCCTTTATTCCCG
CCTATGTACTGCGTCGGAAGGGCCCGGCGTCGGCCTCAGCGAAGGGGCCT
GGGAGCGAGAATGTCATGATGCAGACGGAGACGCAGGAGGTTCTTCAGTC
TCTGGTGGACAGTCGCAGACTCGCAACCGTGCCACCCAACGACAACGACG
ACCTATACATTCTAGAATTTGCCCGAGAGAAGgtacggattggatcgagg
ccacgcgaagtgaattatggacttgcttgcgtcttctactaacacctgct
tccccctccttcctcccccccccctcccaagAACGCCCTAGTGGTGTCGA
ACGACTGTTTCCGCGATCACTGTGCCCGCGATAAGTCCCTCCGCCTTTTC
GTCGCGCAGAACCGCCTGTCCTATACTTTCTTCAACCAGGACTTTTTGCC
CAACCCCGGCCACGCGTGGATCAAGCAGTTGAATGAGAGGGTGAGGGCGA
AGGAGGGGCCTTGAGTGGGATGAGCTGGAGGAGGAGGGAGACGAAGGGAG
GTGGAAGGAGACAAGGCAGGAAGTGTGTGTTCACGCAGTCATTCGTGCGC
ATGTATATTCAATAGAAAAAATTAGGGAAGGATCGTGTACAAACTAACTC
CAAAAGTAACCAGAGAATGACGCAGATGACGAGAAATTATGTTTCCAGCT
TGCTCCCACTCTTTCTCTCCTTTTCATCGTTTTACTCTGAGCAACTGTTT
GGTTGGGCGTACACACAAGTAACTCATGAATGATGGTGGGTAAATAACTG
AATAGCTTGTTGCTCTAATCTGGGTCTCCGTGTACAGTCACTGAATCCTT
GTGATTCCATCGCGACGCACTGGGCCTCCACGGTATATACGTCCAGACTT
TCCCCTGCGACATAGAGGCGTCGCGGCCGGCATCTCTTCCCTG back to topprotein sequence of NO01G05630.2 >NO01G05630.2-protein ID=NO01G05630.2-protein|Name=NO01G05630.2|organism=Nannochloropsis oceanica|type=polypeptide|length=531bp
MPVSSPGGRSPATPTTNSSSSSFSAHATGASTTASNMAVEAPRTLYKTSL
GNIVHAVEGEETGGGDGGANQTTNSTSSTHVRRRKGHLITEEDVHGNVVR
VSRAPVTKKRMRFQAGSGDVRMATDSKREEEGEGEDERRIASHGHDLPPA
SFIFPPHNSQQQYHYGQRQDEEHHRHQHYQQQPQHNHHLLMQQQQQQQCE
DQQRLQYSRYQQHHLEQQQQQQQQQQQQQQQQQQQPHGQQLYHQQQQQHH
QQQQQHCQQEVEDEGNTEMEIDASASAAPPLPSPPRAVLSAHRTLPPPPG
DAKSSSSSSSSSPSSSCSGFLFSSSSSHPPDTMSHQLKARAQTAAGEAPE
AAKPVTVFSTSVPAQIATNPVAACHASLPPPSINAPPSPDRSIRIKVVID
AANVGMHDAPDTSSACQGRIPLNSRIDANRIAAAIEYFRQRNVGVAAFIP
AYVLRRKGPASASAKGPGSENVMMQTETQEVLQSLVDSRRLATVPPNDND
DLYILEFAREKVRIGSRPREVNYGLACVFY* back to topprotein sequence of NO01G05630.1 >NO01G05630.1-protein ID=NO01G05630.1-protein|Name=NO01G05630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=572bp
MPVSSPGGRSPATPTTNSSSSSFSAHATGASTTASNMAVEAPRTLYKTSL
GNIVHAVEGEETGGGDGGANQTTNSTSSTHVRRRKGHLITEEDVHGNVVR
VSRAPVTKKRMRFQAGSGDVRMATDSKREEEGEGEDERRIASHGHDLPPA
SFIFPPHNSQQQYHYGQRQDEEHHRHQHYQQQPQHNHHLLMQQQQQQQCE
DQQRLQYSRYQQHHLEQQQQQQQQQQQQQQQQQQQPHGQQLYHQQQQQHH
QQQQQHCQQEVEDEGNTEMEIDASASAAPPLPSPPRAVLSAHRTLPPPPG
DAKSSSSSSSSSPSSSCSGFLFSSSSSHPPDTMSHQLKARAQTAAGEAPE
AAKPVTVFSTSVPAQIATNPVAACHASLPPPSINAPPSPDRSIRIKVVID
AANVGMHDAPDTSSACQGRIPLNSRIDANRIAAAIEYFRQRNVGVAAFIP
AYVLRRKGPASASAKGPGSENVMMQTETQEVLQSLVDSRRLATVPPNDND
DLYILEFAREKNALVVSNDCFRDHCARDKSLRLFVAQNRLSYTFFNQDFL
PNPGHAWIKQLNERVRAKEGP* back to top
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