NO01G05610, NO01G05610 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO01G05610 vs. NCBI_GenBank
Match: XP_005854694.1 (protein nef1 [Nannochloropsis gaditana CCMP526] >EKU21668.1 protein nef1 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 119.4 bits (298), Expect = 5.100e-24 Identity = 60/79 (75.95%), Postives = 70/79 (88.61%), Query Frame = 0 Query: 1 MTTEAAYYSPVDPALFGILSLILIGSGLSFMAMFFVYEMKVSHEHSSRSIITELSMATLSSTLLGFGTLFLTLWAGVFI 80 M+++ YYSPV+PA FG L+LILIGSGLSFMA+FFVYEMKVSH+H SRS++ EL MATLSS LLG GTLFLTLWAGVF+ Sbjct: 1 MSSQTPYYSPVNPAAFGTLALILIGSGLSFMALFFVYEMKVSHDHKSRSLVKELFMATLSSLLLGCGTLFLTLWAGVFV 79
BLAST of NO01G05610 vs. NCBI_GenBank
Match: XP_005854015.1 (protein nef1, partial [Nannochloropsis gaditana CCMP526] >EKU22344.1 protein nef1, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 92.8 bits (229), Expect = 5.100e-16 Identity = 53/89 (59.55%), Postives = 62/89 (69.66%), Query Frame = 0 Query: 1 MTTEAAYYSPVDPALFGILSLILIGSGLSFMAMFFVYEMK------------------VSHEHSSRSIITELSMATLSSTLLGFGTLFL 72 M+++ YYSPV+PA FG L+LILIGSGLSFMA+FFVYEMK VSH+H SRS++ EL MATLSS LLG GTLFL Sbjct: 1 MSSQTPYYSPVNPAAFGTLALILIGSGLSFMALFFVYEMKGNPEEPSRLASSARLPSLVSHDHKSRSLVKELFMATLSSLLLGCGTLFL 89
BLAST of NO01G05610 vs. NCBI_GenBank
Match: XP_002954824.1 (hypothetical protein VOLCADRAFT_76469 [Volvox carteri f. nagariensis] >EFJ44023.1 hypothetical protein VOLCADRAFT_76469 [Volvox carteri f. nagariensis]) HSP 1 Score: 68.2 bits (165), Expect = 1.300e-8 Identity = 37/77 (48.05%), Postives = 54/77 (70.13%), Query Frame = 0 Query: 3 TEAAYYSPVDPALFGILSLILIGSGLSFMAMFFVYEMKVSHEHSSRSIITELSMATLSSTLLGFGTLFLTLWAGVFI 80 TE + SPV P+L+ L+ +L+GSGL FF+YE V+ S+R++ +EL +A +S+ LLGFGTLFL LW GV++ Sbjct: 2 TELSISSPVSPSLYPTLATVLLGSGLCMTGSFFLYE--VTKTKSNRALRSELLLAFISALLLGFGTLFLLLWVGVYV 76
BLAST of NO01G05610 vs. NCBI_GenBank
Match: GAQ84044.1 (hypothetical protein KFL_001740030 [Klebsormidium nitens]) HSP 1 Score: 67.8 bits (164), Expect = 1.800e-8 Identity = 36/72 (50.00%), Postives = 52/72 (72.22%), Query Frame = 0 Query: 8 YSPVDPALFGILSLILIGSGLSFMAMFFVYEMKVSHEHSSRSIITELSMATLSSTLLGFGTLFLTLWAGVFI 80 +SPVDP L+ +L+++LI GL F A FF+YE V+ SR+I+ EL+ ++S LLGFG+LFL LW GV++ Sbjct: 10 HSPVDPVLYPLLAVVLITLGLLFTASFFIYE--VTSSKFSRNIVRELATGGVASVLLGFGSLFLLLWTGVYV 79
BLAST of NO01G05610 vs. NCBI_GenBank
Match: XP_023323410.1 (transmembrane protein 258-like [Eurytemora affinis]) HSP 1 Score: 67.4 bits (163), Expect = 2.300e-8 Identity = 38/77 (49.35%), Postives = 52/77 (67.53%), Query Frame = 0 Query: 3 TEAAYYSPVDPALFGILSLILIGSGLSFMAMFFVYEMKVSHEHSSRSIITELSMATLSSTLLGFGTLFLTLWAGVFI 80 T + Y SPV+P +F L L+L+G GL F A FFVYE V+ +R + EL ++T++S +GFGTLFL LW G+FI Sbjct: 8 TLSRYASPVNPGVFPHLCLVLLGIGLFFTAWFFVYE--VTSTKFTRELKKELMISTVASIFMGFGTLFLLLWVGIFI 82
BLAST of NO01G05610 vs. NCBI_GenBank
Match: XP_014246012.1 (transmembrane protein 258 [Cimex lectularius]) HSP 1 Score: 66.2 bits (160), Expect = 5.100e-8 Identity = 37/77 (48.05%), Postives = 51/77 (66.23%), Query Frame = 0 Query: 3 TEAAYYSPVDPALFGILSLILIGSGLSFMAMFFVYEMKVSHEHSSRSIITELSMATLSSTLLGFGTLFLTLWAGVFI 80 T + Y SP++PA+F LSLIL+G G+ F A FFVYE V+ +R I EL +A ++S GFG LFL LW G+++ Sbjct: 10 TMSRYVSPINPAVFPHLSLILLGFGIFFTAWFFVYE--VTSTKFTRDIFKELLIALVASAFSGFGILFLMLWVGIYV 84
BLAST of NO01G05610 vs. NCBI_GenBank
Match: XP_019850650.1 (PREDICTED: transmembrane protein 258-like [Amphimedon queenslandica]) HSP 1 Score: 66.2 bits (160), Expect = 5.100e-8 Identity = 37/75 (49.33%), Postives = 52/75 (69.33%), Query Frame = 0 Query: 5 AAYYSPVDPALFGILSLILIGSGLSFMAMFFVYEMKVSHEHSSRSIITELSMATLSSTLLGFGTLFLTLWAGVFI 80 A Y SPV+PA++ L++IL+G GL FMA FFVYE V+ SR I+ EL ++ ++ GFGTLFL LW G+++ Sbjct: 7 ARYVSPVNPAVYPHLAVILLGIGLFFMAWFFVYE--VTSTKFSRRIMKELLVSLWAAVFTGFGTLFLLLWVGIYV 79
BLAST of NO01G05610 vs. NCBI_GenBank
Match: OWF50236.1 (Transmembrane protein 258 [Mizuhopecten yessoensis]) HSP 1 Score: 65.9 bits (159), Expect = 6.700e-8 Identity = 34/75 (45.33%), Postives = 52/75 (69.33%), Query Frame = 0 Query: 5 AAYYSPVDPALFGILSLILIGSGLSFMAMFFVYEMKVSHEHSSRSIITELSMATLSSTLLGFGTLFLTLWAGVFI 80 A Y SP++PA+F L+++L+G G+ FMA FFVYE V+ +R + EL ++ ++S +GFG +FL LW G+FI Sbjct: 79 ARYVSPINPAVFPHLTVVLLGIGVFFMAWFFVYE--VTSNKFTRDLYKELLVSLVASVFMGFGVMFLLLWVGIFI 151
BLAST of NO01G05610 vs. NCBI_GenBank
Match: XP_021354081.1 (transmembrane protein 258 [Mizuhopecten yessoensis]) HSP 1 Score: 65.9 bits (159), Expect = 6.700e-8 Identity = 34/75 (45.33%), Postives = 52/75 (69.33%), Query Frame = 0 Query: 5 AAYYSPVDPALFGILSLILIGSGLSFMAMFFVYEMKVSHEHSSRSIITELSMATLSSTLLGFGTLFLTLWAGVFI 80 A Y SP++PA+F L+++L+G G+ FMA FFVYE V+ +R + EL ++ ++S +GFG +FL LW G+FI Sbjct: 9 ARYVSPINPAVFPHLTVVLLGIGVFFMAWFFVYE--VTSNKFTRDLYKELLVSLVASVFMGFGVMFLLLWVGIFI 81
BLAST of NO01G05610 vs. NCBI_GenBank
Match: ELT99113.1 (hypothetical protein CAPTEDRAFT_142045 [Capitella teleta] >ELU14964.1 hypothetical protein CAPTEDRAFT_98579 [Capitella teleta]) HSP 1 Score: 65.5 bits (158), Expect = 8.700e-8 Identity = 36/81 (44.44%), Postives = 55/81 (67.90%), Query Frame = 0 Query: 1 MTTEA--AYYSPVDPALFGILSLILIGSGLSFMAMFFVYEMKVSHEHSSRSIITELSMATLSSTLLGFGTLFLTLWAGVFI 80 MT E+ Y SP++PA+F L+++L+G G+ FMA FFVYE V+ +R I EL ++ ++S +GFG LFL LW G+++ Sbjct: 1 MTVESMNRYISPINPAVFPHLTVVLLGIGIFFMAWFFVYE--VTSTKFTRDIFKELLVSLVASFFIGFGVLFLLLWVGIYV 79 The following BLAST results are available for this feature:
BLAST of NO01G05610 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO01G05610 ID=NO01G05610|Name=NO01G05610|organism=Nannochloropsis oceanica|type=gene|length=739bpback to top protein sequence of NO01G05610.1 >NO01G05610.1-protein ID=NO01G05610.1-protein|Name=NO01G05610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=80bpback to top Synonyms
Publications
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