NO01G05610, NO01G05610 (gene) Nannochloropsis oceanica

Overview
NameNO01G05610
Unique NameNO01G05610
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length739
Alignment locationchr1:1558793..1559531 +

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Properties
Property NameValue
DescriptionProtein nef1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1558793..1559531 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0034998oligosaccharyltransferase I complex
GO:0016020membrane
GO:0005783endoplasmic reticulum
GO:0005737cytoplasm
Vocabulary: Biological Process
TermDefinition
GO:0006487protein N-linked glycosylation
GO:0009058biosynthetic process
GO:0006464cellular protein modification process
Vocabulary: INTERPRO
TermDefinition
IPR007915TMEM258/Ost5
Homology
BLAST of NO01G05610 vs. NCBI_GenBank
Match: XP_005854694.1 (protein nef1 [Nannochloropsis gaditana CCMP526] >EKU21668.1 protein nef1 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 119.4 bits (298), Expect = 5.100e-24
Identity = 60/79 (75.95%), Postives = 70/79 (88.61%), Query Frame = 0
Query:    1 MTTEAAYYSPVDPALFGILSLILIGSGLSFMAMFFVYEMKVSHEHSSRSIITELSMATLSSTLLGFGTLFLTLWAGVFI 80
            M+++  YYSPV+PA FG L+LILIGSGLSFMA+FFVYEMKVSH+H SRS++ EL MATLSS LLG GTLFLTLWAGVF+
Sbjct:    1 MSSQTPYYSPVNPAAFGTLALILIGSGLSFMALFFVYEMKVSHDHKSRSLVKELFMATLSSLLLGCGTLFLTLWAGVFV 79          
BLAST of NO01G05610 vs. NCBI_GenBank
Match: XP_005854015.1 (protein nef1, partial [Nannochloropsis gaditana CCMP526] >EKU22344.1 protein nef1, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 92.8 bits (229), Expect = 5.100e-16
Identity = 53/89 (59.55%), Postives = 62/89 (69.66%), Query Frame = 0
Query:    1 MTTEAAYYSPVDPALFGILSLILIGSGLSFMAMFFVYEMK------------------VSHEHSSRSIITELSMATLSSTLLGFGTLFL 72
            M+++  YYSPV+PA FG L+LILIGSGLSFMA+FFVYEMK                  VSH+H SRS++ EL MATLSS LLG GTLFL
Sbjct:    1 MSSQTPYYSPVNPAAFGTLALILIGSGLSFMALFFVYEMKGNPEEPSRLASSARLPSLVSHDHKSRSLVKELFMATLSSLLLGCGTLFL 89          
BLAST of NO01G05610 vs. NCBI_GenBank
Match: XP_002954824.1 (hypothetical protein VOLCADRAFT_76469 [Volvox carteri f. nagariensis] >EFJ44023.1 hypothetical protein VOLCADRAFT_76469 [Volvox carteri f. nagariensis])

HSP 1 Score: 68.2 bits (165), Expect = 1.300e-8
Identity = 37/77 (48.05%), Postives = 54/77 (70.13%), Query Frame = 0
Query:    3 TEAAYYSPVDPALFGILSLILIGSGLSFMAMFFVYEMKVSHEHSSRSIITELSMATLSSTLLGFGTLFLTLWAGVFI 80
            TE +  SPV P+L+  L+ +L+GSGL     FF+YE  V+   S+R++ +EL +A +S+ LLGFGTLFL LW GV++
Sbjct:    2 TELSISSPVSPSLYPTLATVLLGSGLCMTGSFFLYE--VTKTKSNRALRSELLLAFISALLLGFGTLFLLLWVGVYV 76          
BLAST of NO01G05610 vs. NCBI_GenBank
Match: GAQ84044.1 (hypothetical protein KFL_001740030 [Klebsormidium nitens])

HSP 1 Score: 67.8 bits (164), Expect = 1.800e-8
Identity = 36/72 (50.00%), Postives = 52/72 (72.22%), Query Frame = 0
Query:    8 YSPVDPALFGILSLILIGSGLSFMAMFFVYEMKVSHEHSSRSIITELSMATLSSTLLGFGTLFLTLWAGVFI 80
            +SPVDP L+ +L+++LI  GL F A FF+YE  V+    SR+I+ EL+   ++S LLGFG+LFL LW GV++
Sbjct:   10 HSPVDPVLYPLLAVVLITLGLLFTASFFIYE--VTSSKFSRNIVRELATGGVASVLLGFGSLFLLLWTGVYV 79          
BLAST of NO01G05610 vs. NCBI_GenBank
Match: XP_023323410.1 (transmembrane protein 258-like [Eurytemora affinis])

HSP 1 Score: 67.4 bits (163), Expect = 2.300e-8
Identity = 38/77 (49.35%), Postives = 52/77 (67.53%), Query Frame = 0
Query:    3 TEAAYYSPVDPALFGILSLILIGSGLSFMAMFFVYEMKVSHEHSSRSIITELSMATLSSTLLGFGTLFLTLWAGVFI 80
            T + Y SPV+P +F  L L+L+G GL F A FFVYE  V+    +R +  EL ++T++S  +GFGTLFL LW G+FI
Sbjct:    8 TLSRYASPVNPGVFPHLCLVLLGIGLFFTAWFFVYE--VTSTKFTRELKKELMISTVASIFMGFGTLFLLLWVGIFI 82          
BLAST of NO01G05610 vs. NCBI_GenBank
Match: XP_014246012.1 (transmembrane protein 258 [Cimex lectularius])

HSP 1 Score: 66.2 bits (160), Expect = 5.100e-8
Identity = 37/77 (48.05%), Postives = 51/77 (66.23%), Query Frame = 0
Query:    3 TEAAYYSPVDPALFGILSLILIGSGLSFMAMFFVYEMKVSHEHSSRSIITELSMATLSSTLLGFGTLFLTLWAGVFI 80
            T + Y SP++PA+F  LSLIL+G G+ F A FFVYE  V+    +R I  EL +A ++S   GFG LFL LW G+++
Sbjct:   10 TMSRYVSPINPAVFPHLSLILLGFGIFFTAWFFVYE--VTSTKFTRDIFKELLIALVASAFSGFGILFLMLWVGIYV 84          
BLAST of NO01G05610 vs. NCBI_GenBank
Match: XP_019850650.1 (PREDICTED: transmembrane protein 258-like [Amphimedon queenslandica])

HSP 1 Score: 66.2 bits (160), Expect = 5.100e-8
Identity = 37/75 (49.33%), Postives = 52/75 (69.33%), Query Frame = 0
Query:    5 AAYYSPVDPALFGILSLILIGSGLSFMAMFFVYEMKVSHEHSSRSIITELSMATLSSTLLGFGTLFLTLWAGVFI 80
            A Y SPV+PA++  L++IL+G GL FMA FFVYE  V+    SR I+ EL ++  ++   GFGTLFL LW G+++
Sbjct:    7 ARYVSPVNPAVYPHLAVILLGIGLFFMAWFFVYE--VTSTKFSRRIMKELLVSLWAAVFTGFGTLFLLLWVGIYV 79          
BLAST of NO01G05610 vs. NCBI_GenBank
Match: OWF50236.1 (Transmembrane protein 258 [Mizuhopecten yessoensis])

HSP 1 Score: 65.9 bits (159), Expect = 6.700e-8
Identity = 34/75 (45.33%), Postives = 52/75 (69.33%), Query Frame = 0
Query:    5 AAYYSPVDPALFGILSLILIGSGLSFMAMFFVYEMKVSHEHSSRSIITELSMATLSSTLLGFGTLFLTLWAGVFI 80
            A Y SP++PA+F  L+++L+G G+ FMA FFVYE  V+    +R +  EL ++ ++S  +GFG +FL LW G+FI
Sbjct:   79 ARYVSPINPAVFPHLTVVLLGIGVFFMAWFFVYE--VTSNKFTRDLYKELLVSLVASVFMGFGVMFLLLWVGIFI 151          
BLAST of NO01G05610 vs. NCBI_GenBank
Match: XP_021354081.1 (transmembrane protein 258 [Mizuhopecten yessoensis])

HSP 1 Score: 65.9 bits (159), Expect = 6.700e-8
Identity = 34/75 (45.33%), Postives = 52/75 (69.33%), Query Frame = 0
Query:    5 AAYYSPVDPALFGILSLILIGSGLSFMAMFFVYEMKVSHEHSSRSIITELSMATLSSTLLGFGTLFLTLWAGVFI 80
            A Y SP++PA+F  L+++L+G G+ FMA FFVYE  V+    +R +  EL ++ ++S  +GFG +FL LW G+FI
Sbjct:    9 ARYVSPINPAVFPHLTVVLLGIGVFFMAWFFVYE--VTSNKFTRDLYKELLVSLVASVFMGFGVMFLLLWVGIFI 81          
BLAST of NO01G05610 vs. NCBI_GenBank
Match: ELT99113.1 (hypothetical protein CAPTEDRAFT_142045 [Capitella teleta] >ELU14964.1 hypothetical protein CAPTEDRAFT_98579 [Capitella teleta])

HSP 1 Score: 65.5 bits (158), Expect = 8.700e-8
Identity = 36/81 (44.44%), Postives = 55/81 (67.90%), Query Frame = 0
Query:    1 MTTEA--AYYSPVDPALFGILSLILIGSGLSFMAMFFVYEMKVSHEHSSRSIITELSMATLSSTLLGFGTLFLTLWAGVFI 80
            MT E+   Y SP++PA+F  L+++L+G G+ FMA FFVYE  V+    +R I  EL ++ ++S  +GFG LFL LW G+++
Sbjct:    1 MTVESMNRYISPINPAVFPHLTVVLLGIGIFFMAWFFVYE--VTSTKFTRDIFKELLVSLVASFFIGFGVLFLLLWVGIYV 79          
The following BLAST results are available for this feature:
BLAST of NO01G05610 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005854694.15.100e-2475.95protein nef1 [Nannochloropsis gaditana CCMP526] >E... [more]
XP_005854015.15.100e-1659.55protein nef1, partial [Nannochloropsis gaditana CC... [more]
XP_002954824.11.300e-848.05hypothetical protein VOLCADRAFT_76469 [Volvox cart... [more]
GAQ84044.11.800e-850.00hypothetical protein KFL_001740030 [Klebsormidium ... [more]
XP_023323410.12.300e-849.35transmembrane protein 258-like [Eurytemora affinis... [more]
XP_014246012.15.100e-848.05transmembrane protein 258 [Cimex lectularius][more]
XP_019850650.15.100e-849.33PREDICTED: transmembrane protein 258-like [Amphime... [more]
OWF50236.16.700e-845.33Transmembrane protein 258 [Mizuhopecten yessoensis... [more]
XP_021354081.16.700e-845.33transmembrane protein 258 [Mizuhopecten yessoensis... [more]
ELT99113.18.700e-844.44hypothetical protein CAPTEDRAFT_142045 [Capitella ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL001nonsL001Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR059ngnoR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006472NSK006472Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G05610.1NO01G05610.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577871gene_593Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G05610.1NO01G05610.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G05610 ID=NO01G05610|Name=NO01G05610|organism=Nannochloropsis oceanica|type=gene|length=739bp
ACAGGGACACCGAAGCAAAGCCACTGCACTCCACCTCTCCGCACCACCAC
CATGACTACGGAGgtacgcaacgccacaagcccctgttttcttgtatcaa
tgcttcattccatgcacgttgtgcgcaggcacatttcctcctcacactga
cgccctcccttcccaccccaccctcccttccttccaaccctatgatcgct
gcgttgatcagGCCGCTTACTACAGCCCCGTGGACCCCGCTTTGTTCGGC
ATCCTGTCCCTCATCTTGATTGGCTCGGGGCTTTCGTTCATGGCAATGTT
CTTCGTGTACGAGATGAAGgtaagtggagataccagagaggggggacagg
gtgtcttttgggaagggggaggaagggcaagaggggggaagaaggaatag
ctgcgtggtttgtgccctaggtggtacccgagcgctgtacttgttctgtc
attatgcaaattgtggcaagtatgaccttgctgatcgcactcacccacac
cgcttgccccctcccttccctagGTCTCGCACGAGCACTCCTCCCGATCC
ATCATCACTGAGTTGTCCATGGCCACTCTTTCGTCCACTCTCCTCGGATT
TGGCACCCTTTTTCTCACATTGTGGGCAGGAGTATTCATTTAAACCGAAT
TGGTCGGAGGGAAGAGCCGTGTGGATGTACTGATTTCAAGAGAGAAAGAA
AGAACTTCAAAAAAGTGATGCGATGAGGTGGGATGTTCA
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protein sequence of NO01G05610.1

>NO01G05610.1-protein ID=NO01G05610.1-protein|Name=NO01G05610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=80bp
MTTEAAYYSPVDPALFGILSLILIGSGLSFMAMFFVYEMKVSHEHSSRSI
ITELSMATLSSTLLGFGTLFLTLWAGVFI*
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Synonyms
Publications