NO01G05550, NO01G05550 (gene) Nannochloropsis oceanica

Overview
NameNO01G05550
Unique NameNO01G05550
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2790
Alignment locationchr1:1529549..1532338 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1529549..1532338 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO01G05550 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR059ngnoR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G05550.1NO01G05550.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577845gene_582Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G05550.1NO01G05550.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G05550 ID=NO01G05550|Name=NO01G05550|organism=Nannochloropsis oceanica|type=gene|length=2790bp
TCCAACGGCATCATTACGACGCGCTCTATGGGCCTTCTTTTTTGTGCTGC
CCATAGCTTTTCTTGTTTTGTCATGTATTCCCTTGCTCGCATGCTCACAG
GCGCACAATTCAACACTGCGAACACTACACATGCTCGTGAGCCGTGGCGG
GCCTTAACCTTGGTGCCATTTGGCCTTGTATGTGCAGGAGAGCGAAGCCC
ATATCTATCCGTTGTACTCTTTTTTGGCTGGCTGCTTCCTCTCTCCTCTA
GTGTGCGCGCCCACATCTGCGTCCACACCCCTGCGCGCCCCTTGCCTTGG
TGAAGGGTTTACACTCTTCTAAGGCCCTTCATGAACTTTGCGTTGATGTC
ATTCGGTCCTGTGTTCGCAGGAGGGCAGACCCCATACCAATTTTTGTTGT
GCTTTTTTTGGGTGTTGCTTCCTCTCTCAGCGCGCGCCCACATCCGCGTC
CACACCCCTACATGCCCCTCGCCTTGCCTTCCATCAAGACAAAGACAACC
TGCTCTTGTTCCTCACTTTCCATGAAGTGGATTGGCGTCTTTCCCTTAGG
GTTCATTTGCCCCTCGTGTCTTCCCCCCTCTAAACCAACTTGATGATGCC
CAGGAGATTCCTGATGATGATGTCGAGCCCACGCCCGCATCCTCGCAACA
ACACCACCATCACTGCCGCACACACATAGCATCCACACCAACATATTACC
TCATATACACAAACGACAGTAGCATCCATGCCTTTCGGTGTCCGTCGCTT
TTCTCCTTCCAAGGCCACTACTACCAACGCCCCTGCCGTTCCCCCAACTG
CATCTCCCGAGGAAGTAGTGCGAAACGAAGCACATTCGCACGTTGTGACT
GAATTGGAGCAAGTCATCGAAAAGGACAGGCAACGTACTGCTGCTATGGC
TGCAGCATCTGGTGCCGGGAACGCTCGTGCCCGTGGAGGAGGAAATGTGG
GGGAGGAGGAGTCGGTGAGCTCTCGCTTCTCCAACCGTTATGAGGACGAG
GAAGCCCCGTCCCCCGGTCGACAGTACCGCAACTCCCGCGGACAAAGCGG
TGCCCGTCAGTCCCGCCGTATCTCCCGTCCGGCTCCGTCTCGCCAGTACT
ACGGCGACAGCGGAGATGAGTACGATGATCACTACCCTGAAGATGAGGAG
GTCTCGCCTCGCCGGGCCGCCGGTCGCAGCCAACGCTACTCGCGCCGCAG
CTCCTCGGGTGCCAACAGCGAGAGTGCCCTGGTCGTGCACCAGAAGCCCG
GTGTTGTGGTGGTAGACGATGGGGAGGAGGTGGCGGGGGGCTGCTGCCAC
GGGGTCAGGACTTGCGCCAAGGTCACCTACGACATTTTTAGGTCCATCCC
TCTTCTCACCCTCGTGTGGGCAGGCGGGGCCATCGCCGCCTCCAATTTGG
GAGTGAGCAAGGTTCAGACCGTGGGAATGAATATCTCCATCCTCGAGAAC
TTGGAGGGACTATTCGTGTACATGACCTATTTCCTGTACTACATTTATGC
CGTCAACGCCGCGATCGCCCTCCTCTCCCTCCTCTTCACCGGCGCCACTC
TCGAGATTCTAGTGGGCAAATTCTGCTCCACCCGCGGATGTGGCGGTGGA
TTCAAACGCTTTTCTGTCCGGTCCGTGCAAGCGTTCTTCTTTCCCCTCTC
CTACATCGGCTTCCTGGCTACGCTGGGCCTTTTTCTGCTCACCGTCCTCC
TCGCCTCCCTCGTCCTCACGACCAACCAAGCTTGCGGTGCCGGAGCCACC
CTCGGGGCGGATGCCGCCGCTGCTAGCCTCTCTGCGGTGCTTAACACAGT
CACTCATTGGATGGGCCTCAAGTCCGTGGCCATTTCGGGCGCCGAGCTGG
CTGGATATTGCGCGAGCCCGCATGCCCTGTCCTCGTGGTTCTGGCGAATG
ACCTTCATCTATGTGGCCGCCGCCACCATCTTCCAAGCGAACCTGGCAGT
CTCCGCCTGGACAATCTTCTTGAACACGGGCCACGAGATGAAGAAGGCCG
AGCTGGGACGGGCACACGCGGAGCAGCTGACGCAGGTGCTGGCCAAGGCC
GGGAGGGAAGGAGGGGTGATGATGAAGAGGCCGCGCTCGGTGTCGAGCAT
GGGAGGGAGAGGAAGGCCATATGCCAGCAGCAGGGCAGAGGCGAAGGAGG
CGGAGTACTACTACGACGATGATATTTGTTAAATGGAGGGAGAGAGTTGC
ACAGATTATTCAAGATTATACACGCACACGGACAAGAGTTTTTTCCAATC
TACTATCATTACTATATTATCAATAAAATTGTTGATGTTAATGGTCATCG
TATTCCATAAAGAGATATCTGAGCACCGAGGTGCATGAAGGCGAAAGAGA
AGGAAGGGAGGGAGAGAAGGATGGTCAGGGATTCTGTTTTGAGGACGAGA
TTGAGATAAGAAACGGGAGGACAGAAGAGAGAGGGAACAGCGAATCTTTC
GCAAAGCAGCCATAAAATGTTTGTTTCGGAGCGCCCACAGTATATACACA
CCACGACGACACGAAGAGGGGGACAGGGGGAAAATGACGGGAGAGCAGGG
AGGAGCAAGGGAGGTGAGAGAGAAAAGGCACGCAGGGGAGACGGGAGGGA
GGGAGGAAGAAGAGGAAAGGAGGGGCTATGGCCCTCCAAAGACTCTTCTT
GCTCGCTCATATTTACTCAAGAGAAAAGGAACTACAGATACCCCGACCTT
CCCAGGCGCCGCGCACATAAACAGATACAGAAAAAAGACCAAGAGGAAGA
AAAAGAAAGGGAAAAAACAGCATATCACACCAGCCGTGGA
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protein sequence of NO01G05550.1

>NO01G05550.1-protein ID=NO01G05550.1-protein|Name=NO01G05550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=485bp
MPFGVRRFSPSKATTTNAPAVPPTASPEEVVRNEAHSHVVTELEQVIEKD
RQRTAAMAAASGAGNARARGGGNVGEEESVSSRFSNRYEDEEAPSPGRQY
RNSRGQSGARQSRRISRPAPSRQYYGDSGDEYDDHYPEDEEVSPRRAAGR
SQRYSRRSSSGANSESALVVHQKPGVVVVDDGEEVAGGCCHGVRTCAKVT
YDIFRSIPLLTLVWAGGAIAASNLGVSKVQTVGMNISILENLEGLFVYMT
YFLYYIYAVNAAIALLSLLFTGATLEILVGKFCSTRGCGGGFKRFSVRSV
QAFFFPLSYIGFLATLGLFLLTVLLASLVLTTNQACGAGATLGADAAAAS
LSAVLNTVTHWMGLKSVAISGAELAGYCASPHALSSWFWRMTFIYVAAAT
IFQANLAVSAWTIFLNTGHEMKKAELGRAHAEQLTQVLAKAGREGGVMMK
RPRSVSSMGGRGRPYASSRAEAKEAEYYYDDDIC*
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Synonyms
Publications