NO01G05510, NO01G05510 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO01G05510 vs. NCBI_GenBank
Match: XP_013583737.1 (PREDICTED: DNA excision repair protein ERCC-1 [Brassica oleracea var. oleracea]) HSP 1 Score: 213.4 bits (542), Expect = 1.700e-51 Identity = 105/200 (52.50%), Postives = 149/200 (74.50%), Query Frame = 0 Query: 150 ISLSPRQIGNPVLKHIKNVPYQIVEGLVPDFVLGAYTCCIYISIRYHLLHSKYLFQRVKELRRDYRLRLILCLVDDANNKEPLLEINKLAIRENCTLLLAWSTAEAARYLETYKAYENKSAESIQERVDDNYASRLANVLTTIRGINKTNVSTLSSNFGSLASMMAANKEEIIQCPDLGEVKVQNLWTAFHEPFIRKPSS 350 I +S RQ GNP+LKHI+NV + E ++PD++LG TC +Y+S+RYHLLH YL+ R++EL+++++LR++LC VD ++ +PLLE+ K A+ +CTLL AWS E ARYLET K YENK A+ IQ ++D +Y SRL + LT+IR +NK++V TL S FGSLA +M A+ E++ +CP +GE KV+ L+ FHEPF R SS Sbjct: 118 ILVSNRQKGNPLLKHIRNVKWVFSE-IIPDYLLGQSTCALYLSLRYHLLHPDYLYFRIRELQKNFKLRVVLCHVDVEDSVKPLLEVTKTALLHDCTLLCAWSLTECARYLETIKVYENKPADLIQGQMDTDYLSRLNHSLTSIRHVNKSDVVTLGSTFGSLAHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRAASS 316
BLAST of NO01G05510 vs. NCBI_GenBank
Match: XP_006662516.1 (PREDICTED: DNA excision repair protein ERCC-1 [Oryza brachyantha]) HSP 1 Score: 212.2 bits (539), Expect = 3.800e-51 Identity = 104/199 (52.26%), Postives = 146/199 (73.37%), Query Frame = 0 Query: 150 ISLSPRQIGNPVLKHIKNVPYQIVEGLVPDFVLGAYTCCIYISIRYHLLHSKYLFQRVKELRRDYRLRLILCLVDDANNKEPLLEINKLAIRENCTLLLAWSTAEAARYLETYKAYENKSAESIQERVDDNYASRLANVLTTIRGINKTNVSTLSSNFGSLASMMAANKEEIIQCPDLGEVKVQNLWTAFHEPFIRKPS 349 I +S RQ GNP+LKHI+N + + +VPD+VLG +C +Y+S+RYHLLH YL+ R++EL+++++LR+ILC +D + +PL E+ + AI +CTLL WS E RYLET K YENKSA+SI+E +D++Y SRL + LT+IR +NKT+V TL SNFGSL+ +M A+ EE+ +CP +GE KV+ L FHEPF R S Sbjct: 101 ILVSHRQKGNPLLKHIRNARWTFAD-VVPDYVLGQSSCALYLSVRYHLLHPDYLYYRIRELQKNFKLRVILCHIDVEDVVKPLHEVTRTAILHDCTLLCGWSLEECGRYLETIKVYENKSADSIREHMDNDYLSRLTHALTSIRHVNKTDVVTLGSNFGSLSQVMNASMEELARCPGIGERKVKRLHDTFHEPFKRASS 298
BLAST of NO01G05510 vs. NCBI_GenBank
Match: NP_001131279.1 (DNA excision repair protein ERCC-1 [Zea mays] >ACF79618.1 unknown [Zea mays] >ONM05060.1 DNA excision repair protein ERCC-1 [Zea mays]) HSP 1 Score: 211.5 bits (537), Expect = 6.500e-51 Identity = 108/215 (50.23%), Postives = 153/215 (71.16%), Query Frame = 0 Query: 138 PPRHNPSAGVP----VISLSPRQIGNPVLKHIKNVPYQIVEGLVPDFVLGAYTCCIYISIRYHLLHSKYLFQRVKELRRDYRLRLILCLVDDANNKEPLLEINKLAIRENCTLLLAWSTAEAARYLETYKAYENKSAESIQERVDDNYASRLANVLTTIRGINKTNVSTLSSNFGSLASMMAANKEEIIQCPDLGEVKVQNLWTAFHEPFIRKPS 349 P + +PSA P I +S RQ GNP+LKHI+N + + +VPD+VLG +C +Y+SIRYHLLH YL+ R++EL++++RLR+ILC VD + +PL EI + A+ +CTLL WS E RYLET K YENK A+SI+E +D++Y SRL + LT+IR +NKT+V TL S+FGSL+ +M + +E+ +CP +GE KV+ L+ FHEPF R P+ Sbjct: 94 PTQASPSAPTPQSKNSILVSHRQRGNPLLKHIRNARWTFAD-VVPDYVLGQSSCALYLSIRYHLLHPDYLYYRIRELQKNFRLRVILCHVDVEDVIKPLHEITRTALLHDCTLLCGWSLEECGRYLETIKVYENKPADSIREHMDNDYLSRLTHGLTSIRHVNKTDVVTLGSSFGSLSQIMNGSMDELARCPGIGERKVRRLYDTFHEPFKRVPA 307
BLAST of NO01G05510 vs. NCBI_GenBank
Match: KMZ68222.1 (DNA excision repair protein 1 [Zostera marina]) HSP 1 Score: 211.5 bits (537), Expect = 6.500e-51 Identity = 103/202 (50.99%), Postives = 148/202 (73.27%), Query Frame = 0 Query: 150 ISLSPRQIGNPVLKHIKNVPYQIVEGLVPDFVLGAYTCCIYISIRYHLLHSKYLFQRVKELRRDYRLRLILCLVDDANNKEPLLEINKLAIRENCTLLLAWSTAEAARYLETYKAYENKSAESIQERVDDNYASRLANVLTTIRGINKTNVSTLSSNFGSLASMMAANKEEIIQCPDLGEVKVQNLWTAFHEPFIRKPSSSL 352 I +S RQ GNP+LKH++NV + + +V D+VLG +C +Y+S+RYHLLH +YL+ R+KEL+++++LR+ILC VD + +PLLE+ + +I CTLL WS E RYLET K YENKSA++I+E +D++Y SRL + LTT+R +NKT+V TL S FGSL+ +M A+ EE+ +CP +GE KV+ L+ FHEPF R S+ Sbjct: 102 ILVSHRQKGNPLLKHVRNVKW-VFADVVCDYVLGDSSCALYLSLRYHLLHPEYLYFRIKELKKNFKLRVILCHVDVVDVLKPLLEVTRTSILHECTLLCGWSFEECGRYLETIKVYENKSADNIREHMDNDYMSRLNHALTTVRRVNKTDVITLGSTFGSLSGIMDASMEELARCPGIGEAKVKRLYDTFHEPFKRVSCQSV 302
BLAST of NO01G05510 vs. NCBI_GenBank
Match: KFK37924.1 (hypothetical protein AALP_AA3G048100 [Arabis alpina]) HSP 1 Score: 211.1 bits (536), Expect = 8.500e-51 Identity = 104/200 (52.00%), Postives = 148/200 (74.00%), Query Frame = 0 Query: 150 ISLSPRQIGNPVLKHIKNVPYQIVEGLVPDFVLGAYTCCIYISIRYHLLHSKYLFQRVKELRRDYRLRLILCLVDDANNKEPLLEINKLAIRENCTLLLAWSTAEAARYLETYKAYENKSAESIQERVDDNYASRLANVLTTIRGINKTNVSTLSSNFGSLASMMAANKEEIIQCPDLGEVKVQNLWTAFHEPFIRKPSS 350 I +S RQ GNP+LKHI+NV + + +VPD++LG TC +Y+S+RYHLLH+ YL+ R++EL+++++LR++LC VD + +PLLE+ K A+ +CTLL AWS E ARYLET K YENK A+ IQ ++D +Y SRL + LT+IR +NK++V TL S FGSL +M A+ E++ +CP +GE KV+ L+ FHEPF R SS Sbjct: 110 ILVSNRQKGNPLLKHIRNVKW-VHSDIVPDYLLGQSTCALYLSLRYHLLHTDYLYFRIRELQKNFKLRVVLCHVDVEDAVKPLLEVTKTALLHDCTLLCAWSLTECARYLETIKVYENKPADLIQGQMDTDYLSRLNHSLTSIRHVNKSDVVTLGSTFGSLTHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRATSS 308
BLAST of NO01G05510 vs. NCBI_GenBank
Match: KFK37925.1 (hypothetical protein AALP_AA3G048100 [Arabis alpina]) HSP 1 Score: 211.1 bits (536), Expect = 8.500e-51 Identity = 104/200 (52.00%), Postives = 148/200 (74.00%), Query Frame = 0 Query: 150 ISLSPRQIGNPVLKHIKNVPYQIVEGLVPDFVLGAYTCCIYISIRYHLLHSKYLFQRVKELRRDYRLRLILCLVDDANNKEPLLEINKLAIRENCTLLLAWSTAEAARYLETYKAYENKSAESIQERVDDNYASRLANVLTTIRGINKTNVSTLSSNFGSLASMMAANKEEIIQCPDLGEVKVQNLWTAFHEPFIRKPSS 350 I +S RQ GNP+LKHI+NV + + +VPD++LG TC +Y+S+RYHLLH+ YL+ R++EL+++++LR++LC VD + +PLLE+ K A+ +CTLL AWS E ARYLET K YENK A+ IQ ++D +Y SRL + LT+IR +NK++V TL S FGSL +M A+ E++ +CP +GE KV+ L+ FHEPF R SS Sbjct: 109 ILVSNRQKGNPLLKHIRNVKW-VHSDIVPDYLLGQSTCALYLSLRYHLLHTDYLYFRIRELQKNFKLRVVLCHVDVEDAVKPLLEVTKTALLHDCTLLCAWSLTECARYLETIKVYENKPADLIQGQMDTDYLSRLNHSLTSIRHVNKSDVVTLGSTFGSLTHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRATSS 307
BLAST of NO01G05510 vs. NCBI_GenBank
Match: EFJ05335.1 (hypothetical protein SELMODRAFT_137345, partial [Selaginella moellendorffii]) HSP 1 Score: 210.7 bits (535), Expect = 1.100e-50 Identity = 104/190 (54.74%), Postives = 143/190 (75.26%), Query Frame = 0 Query: 156 QIGNPVLKHIKNVPYQIVEGLVPDFVLGAYTCCIYISIRYHLLHSKYLFQRVKELRRDYRLRLILCLVDDANNKEPLLEINKLAIRENCTLLLAWSTAEAARYLETYKAYENKSAESIQERVDDNYASRLANVLTTIRGINKTNVSTLSSNFGSLASMMAANKEEIIQCPDLGEVKVQNLWTAFHEPFIR 346 Q GNPVLK I+NV + + +VPD+VLG +C +Y+SIRYHLLH YL+ R++EL++++RLR++LC VD + +PL E+ K A+ +C+LL AWS E ARYLET K YENK A++IQER D +Y SRL + LT++R INKT+V TL S FGS+AS+M+A+ E++ +CP +GE KV+ L AFHEPF R Sbjct: 1 QQGNPVLKFIRNVRWTF-DDIVPDYVLGQSSCALYLSIRYHLLHPDYLYFRIRELQKNFRLRVVLCYVDVEDVIKPLHEVTKTALLHDCSLLCAWSLEECARYLETIKMYENKPADNIQERTDQDYLSRLTSALTSVRHINKTDVVTLGSTFGSMASVMSASMEDLARCPGIGERKVKRLHDAFHEPFRR 189
BLAST of NO01G05510 vs. NCBI_GenBank
Match: ACG48134.1 (mating-type switching protein swi10 [Zea mays]) HSP 1 Score: 210.7 bits (535), Expect = 1.100e-50 Identity = 107/215 (49.77%), Postives = 153/215 (71.16%), Query Frame = 0 Query: 138 PPRHNPSAGVP----VISLSPRQIGNPVLKHIKNVPYQIVEGLVPDFVLGAYTCCIYISIRYHLLHSKYLFQRVKELRRDYRLRLILCLVDDANNKEPLLEINKLAIRENCTLLLAWSTAEAARYLETYKAYENKSAESIQERVDDNYASRLANVLTTIRGINKTNVSTLSSNFGSLASMMAANKEEIIQCPDLGEVKVQNLWTAFHEPFIRKPS 349 P + +PSA P I +S RQ GNP+LKHI+N + + +VPD+VLG +C +Y+SIRYHLLH YL+ R++E+++++RLR+ILC VD + +PL EI + A+ +CTLL WS E RYLET K YENK A+SI+E +D++Y SRL + LT+IR +NKT+V TL S+FGSL+ +M + +E+ +CP +GE KV+ L+ FHEPF R P+ Sbjct: 93 PTQASPSAPTPQSKNSILVSHRQRGNPLLKHIRNARWTFAD-VVPDYVLGQSSCALYLSIRYHLLHPDYLYYRIREMQKNFRLRVILCHVDVEDVIKPLHEITRTALLHDCTLLCGWSLEECGRYLETIKVYENKPADSIREHMDNDYLSRLTHGLTSIRHVNKTDVVTLGSSFGSLSQIMNGSMDELARCPGIGERKVRRLYDTFHEPFKRVPA 306
BLAST of NO01G05510 vs. NCBI_GenBank
Match: XP_010464040.1 (PREDICTED: DNA excision repair protein ERCC-1 [Camelina sativa]) HSP 1 Score: 210.7 bits (535), Expect = 1.100e-50 Identity = 105/208 (50.48%), Postives = 149/208 (71.63%), Query Frame = 0 Query: 142 NPSAGVPVISLSPRQIGNPVLKHIKNVPYQIVEGLVPDFVLGAYTCCIYISIRYHLLHSKYLFQRVKELRRDYRLRLILCLVDDANNKEPLLEINKLAIRENCTLLLAWSTAEAARYLETYKAYENKSAESIQERVDDNYASRLANVLTTIRGINKTNVSTLSSNFGSLASMMAANKEEIIQCPDLGEVKVQNLWTAFHEPFIRKPSS 350 N S I +S RQ GNP+LKHI+NV + + ++PD+VLG +C +Y+S+RYHLLH YL+ R++EL+++++LR++LC VD + +PLLE+ K A+ +CTLL AWS E ARYLET K YENK A+ IQ ++D +Y SRL + LT+IR +NK++V TL S FGSLA +M A+ E++ +CP +GE KV+ L+ FHEPF R S Sbjct: 116 NTSQTRNAILVSNRQKGNPLLKHIRNVKW-VFSDIIPDYVLGQSSCALYLSLRYHLLHPDYLYFRIRELQKNFKLRVVLCHVDVEDTVKPLLEVTKTALLHDCTLLCAWSMTECARYLETIKVYENKPADLIQGQMDTDYLSRLNHSLTSIRHVNKSDVVTLGSTFGSLAHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRATPS 322
BLAST of NO01G05510 vs. NCBI_GenBank
Match: XP_003591075.1 (DNA excision repair protein ERCC-1 [Medicago truncatula] >AES61326.1 DNA excision repair protein ERCC-1 [Medicago truncatula]) HSP 1 Score: 210.7 bits (535), Expect = 1.100e-50 Identity = 104/210 (49.52%), Postives = 150/210 (71.43%), Query Frame = 0 Query: 143 PSAGVPVISLSPRQIGNPVLKHIKNVPYQIVEGLVPDFVLGAYTCCIYISIRYHLLHSKYLFQRVKELRRDYRLRLILCLVDDANNKEPLLEINKLAIRENCTLLLAWSTAEAARYLETYKAYENKSAESIQERVDDNYASRLANVLTTIRGINKTNVSTLSSNFGSLASMMAANKEEIIQCPDLGEVKVQNLWTAFHEPFIRKPSSSLA 353 P+ I +S RQ GNP+LKHI+NV + + +V DF+LG +C +Y+S+RYHLLH YL+ R++EL+++++LR++LC VD + +PLLE+ K A+ +CTLL WS E RYLET K YENK A+ IQ ++D +Y SRL + LTT+R +NKT+V TL +NFGSL+++M A+ E++ +CP +GE KV+ L+ FHEPF R SS A Sbjct: 104 PTQNRNAILVSNRQKGNPLLKHIRNVRWTFAD-VVCDFLLGQSSCALYLSLRYHLLHPDYLYHRIRELQKNFKLRVVLCHVDVEDVVKPLLEVTKTALLHDCTLLCGWSLEECGRYLETIKVYENKPADIIQGQMDTDYLSRLTHALTTVRHVNKTDVVTLGTNFGSLSNIMGASMEDLARCPGIGERKVKRLFDTFHEPFKRVESSRQA 312 The following BLAST results are available for this feature:
BLAST of NO01G05510 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO01G05510 ID=NO01G05510|Name=NO01G05510|organism=Nannochloropsis oceanica|type=gene|length=3215bpback to top protein sequence of NO01G05510.1 >NO01G05510.1-protein ID=NO01G05510.1-protein|Name=NO01G05510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=526bpback to top Synonyms
Publications
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