NO01G05510, NO01G05510 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO01G05510 vs. NCBI_GenBank
Match: GAQ79630.1 (endonuclease [Klebsormidium nitens]) HSP 1 Score: 216.1 bits (549), Expect = 2.600e-52 Identity = 105/196 (53.57%), Postives = 146/196 (74.49%), Query Frame = 0 Query: 150 ISLSPRQIGNPVLKHIKNVPYQIVEGLVPDFVLGAYTCCIYISIRYHLLHSKYLFQRVKELRRDYRLRLILCLVDDANNKEPLLEINKLAIRENCTLLLAWSTAEAARYLETYKAYENKSAESIQERVDDNYASRLANVLTTIRGINKTNVSTLSSNFGSLASMMAANKEEIIQCPDLGEVKVQNLWTAFHEPFIR 346 I S RQ GNP+LKHI+NV + + +VPD++LG TC +Y+S+RYHLLH Y++ R++EL+++YRLR++LC VD + +PL E+ K+A+ +CTL+ AWS E ARYLET K YENK A++IQER D +Y SRL LTT+R +NKT+ TL + FGSLA++M A+ EE+ +CP +GE KV+ L+ AFHEPF R Sbjct: 190 IVASNRQRGNPLLKHIRNVRW-VHGDIVPDYLLGETTCALYLSLRYHLLHPDYIYFRIRELQKNYRLRVVLCHVDVEDVIKPLHEVTKIALLHDCTLICAWSNEECARYLETIKMYENKPADNIQERTDHDYLSRLTAALTTVRHVNKTDTVTLGTTFGSLANLMGASMEELAKCPGIGEKKVKRLYDAFHEPFRR 384
BLAST of NO01G05510 vs. NCBI_GenBank
Match: XP_024534027.1 (DNA excision repair protein ERCC-1 [Selaginella moellendorffii]) HSP 1 Score: 216.1 bits (549), Expect = 2.600e-52 Identity = 107/196 (54.59%), Postives = 148/196 (75.51%), Query Frame = 0 Query: 150 ISLSPRQIGNPVLKHIKNVPYQIVEGLVPDFVLGAYTCCIYISIRYHLLHSKYLFQRVKELRRDYRLRLILCLVDDANNKEPLLEINKLAIRENCTLLLAWSTAEAARYLETYKAYENKSAESIQERVDDNYASRLANVLTTIRGINKTNVSTLSSNFGSLASMMAANKEEIIQCPDLGEVKVQNLWTAFHEPFIR 346 I +S RQ GNPVLK I+NV + + +VPD+VLG +C +Y+SIRYHLLH YL+ R++EL++++RLR++LC VD + +PL E+ K A+ +C+LL AWS E ARYLET K YENK A++IQER D +Y SRL + LT++R INKT+V TL S FGS+AS+M+A+ E++ +CP +GE KV+ L+ AFHEPF R Sbjct: 52 ILVSRRQQGNPVLKFIRNVRWTF-DDIVPDYVLGQSSCALYLSIRYHLLHPDYLYFRIRELQKNFRLRVVLCYVDVEDVIKPLHEVTKTALLHDCSLLCAWSLEECARYLETIKMYENKPADNIQERTDQDYLSRLTSALTSVRHINKTDVVTLGSTFGSMASVMSASMEDLARCPGIGERKVKRLYDAFHEPFRR 246
BLAST of NO01G05510 vs. NCBI_GenBank
Match: XP_018486615.1 (PREDICTED: DNA excision repair protein ERCC-1 [Raphanus sativus]) HSP 1 Score: 214.5 bits (545), Expect = 7.700e-52 Identity = 105/200 (52.50%), Postives = 149/200 (74.50%), Query Frame = 0 Query: 150 ISLSPRQIGNPVLKHIKNVPYQIVEGLVPDFVLGAYTCCIYISIRYHLLHSKYLFQRVKELRRDYRLRLILCLVDDANNKEPLLEINKLAIRENCTLLLAWSTAEAARYLETYKAYENKSAESIQERVDDNYASRLANVLTTIRGINKTNVSTLSSNFGSLASMMAANKEEIIQCPDLGEVKVQNLWTAFHEPFIRKPSS 350 I +S RQ GNP+LKHI+NV + + ++PD++LG TC +Y+S+RYHLLH YL+ R++EL+R+++LR++LC VD ++ +PLLE+ K A+ +CTLL AWS E ARYLET K YENK A+ IQ ++D +Y SRL + LT+IR +NK++V TL S FGSLA +M A+ E++ +CP +GE KV+ L+ FHEPF R SS Sbjct: 126 ILVSNRQKGNPLLKHIRNVKW-VYSDIIPDYLLGQTTCALYLSLRYHLLHPDYLYFRIRELQRNFKLRVVLCHVDVEDSVKPLLEVTKTALLHDCTLLCAWSLTECARYLETIKVYENKPADLIQGQMDTDYLSRLNHSLTSIRHVNKSDVVTLGSTFGSLAHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRAASS 324
BLAST of NO01G05510 vs. NCBI_GenBank
Match: XP_002993643.2 (DNA excision repair protein ERCC-1 [Selaginella moellendorffii]) HSP 1 Score: 214.5 bits (545), Expect = 7.700e-52 Identity = 112/221 (50.68%), Postives = 154/221 (69.68%), Query Frame = 0 Query: 135 PMMPPRHNPSAGVP----------VISLSPRQIGNPVLKHIKNVPYQIVEGLVPDFVLGAYTCCIYISIRYHLLHSKYLFQRVKELRRDYRLRLILCLVDDANNKEPLLEINKLAIRENCTLLLAWSTAEAARYLETYKAYENKSAESIQERVDDNYASRLANVLTTIRGINKTNVSTLSSNFGSLASMMAANKEEIIQCPDLGEVKVQNLWTAFHEPFIR 346 P+ PP + AG I +S RQ GNPVLK I+NV + + +VPD+VLG +C +Y+SIRYHLLH YL+ R++EL++++RLR++LC VD + +PL E+ K A+ +C+LL AWS E ARYLET K YENK A++IQER D +Y SRL + LT++R INKT+V TL S FGS+AS+M+A+ E++ +CP +GE KV+ L AFHEPF R Sbjct: 27 PVPPPSGSAPAGAASGASNSQSRNAILVSRRQQGNPVLKFIRNVRWTF-DDIVPDYVLGQSSCALYLSIRYHLLHPDYLYFRIRELQKNFRLRVVLCYVDVEDVIKPLHEVTKTALLHDCSLLCAWSLEECARYLETIKMYENKPADNIQERTDQDYLSRLTSALTSVRHINKTDVVTLGSTFGSMASVMSASMEDLARCPGIGERKVKRLHDAFHEPFRR 246
BLAST of NO01G05510 vs. NCBI_GenBank
Match: XP_019427809.1 (PREDICTED: DNA excision repair protein ERCC-1 [Lupinus angustifolius] >OIV90846.1 hypothetical protein TanjilG_15579 [Lupinus angustifolius]) HSP 1 Score: 214.2 bits (544), Expect = 1.000e-51 Identity = 105/200 (52.50%), Postives = 146/200 (73.00%), Query Frame = 0 Query: 150 ISLSPRQIGNPVLKHIKNVPYQIVEGLVPDFVLGAYTCCIYISIRYHLLHSKYLFQRVKELRRDYRLRLILCLVDDANNKEPLLEINKLAIRENCTLLLAWSTAEAARYLETYKAYENKSAESIQERVDDNYASRLANVLTTIRGINKTNVSTLSSNFGSLASMMAANKEEIIQCPDLGEVKVQNLWTAFHEPFIRKPSS 350 I +S RQ GNP+LKHI+NV + I +V D++LG +C +YIS+RYHLLH YL+ R++EL+++++LR++LC VD + K+PLLE+ K A+ CTLL AWS E RYLET K YENK A+ IQ ++D +Y SRL + LTT+R +NKT+V TL + FGSL+ +M A+ E++ +CP +GE KV+ LW FHEPF R SS Sbjct: 108 ILVSNRQKGNPLLKHIRNVKW-IFADVVCDYLLGQSSCALYISLRYHLLHPDYLYYRIRELQKNFKLRVVLCHVDVEDVKKPLLEVTKTALLHECTLLCAWSLEECGRYLETIKVYENKPADIIQGQMDTDYLSRLTHALTTVRHVNKTDVVTLGTTFGSLSHIMGASMEDLARCPGIGERKVKRLWDTFHEPFKRVESS 306
BLAST of NO01G05510 vs. NCBI_GenBank
Match: EFJ25613.1 (hypothetical protein SELMODRAFT_98787, partial [Selaginella moellendorffii]) HSP 1 Score: 213.8 bits (543), Expect = 1.300e-51 Identity = 108/196 (55.10%), Postives = 148/196 (75.51%), Query Frame = 0 Query: 150 ISLSPRQIGNPVLKHIKNVPYQIVEGLVPDFVLGAYTCCIYISIRYHLLHSKYLFQRVKELRRDYRLRLILCLVDDANNKEPLLEINKLAIRENCTLLLAWSTAEAARYLETYKAYENKSAESIQERVDDNYASRLANVLTTIRGINKTNVSTLSSNFGSLASMMAANKEEIIQCPDLGEVKVQNLWTAFHEPFIR 346 I +S RQ GNPVLK I+NV + + +VPD+VLG +C +Y+SIRYHLLH YL+ R++EL++++RLR++LC VD+ K PL E+ K A+ +C+LL AWS E ARYLET K YENK A++IQER D +Y SRL + LT++R INKT+V TL S FGS+AS+M+A+ E++ +CP +GE KV+ L+ AFHEPF R Sbjct: 19 ILVSRRQQGNPVLKFIRNVRWTF-DDIVPDYVLGQSSCALYLSIRYHLLHPDYLYFRIRELQKNFRLRVVLCYVDEDVIK-PLHEVTKTALLHDCSLLCAWSLEECARYLETIKMYENKPADNIQERTDQDYLSRLTSALTSVRHINKTDVVTLGSTFGSMASVMSASMEDLARCPGIGERKVKRLYDAFHEPFRR 212
BLAST of NO01G05510 vs. NCBI_GenBank
Match: XP_006408101.1 (DNA excision repair protein ERCC-1 [Eutrema salsugineum] >ESQ49554.1 hypothetical protein EUTSA_v10020823mg [Eutrema salsugineum]) HSP 1 Score: 213.8 bits (543), Expect = 1.300e-51 Identity = 105/200 (52.50%), Postives = 149/200 (74.50%), Query Frame = 0 Query: 150 ISLSPRQIGNPVLKHIKNVPYQIVEGLVPDFVLGAYTCCIYISIRYHLLHSKYLFQRVKELRRDYRLRLILCLVDDANNKEPLLEINKLAIRENCTLLLAWSTAEAARYLETYKAYENKSAESIQERVDDNYASRLANVLTTIRGINKTNVSTLSSNFGSLASMMAANKEEIIQCPDLGEVKVQNLWTAFHEPFIRKPSS 350 I +S RQ GNP+LKHI+NV + E ++PD++LG TC +Y+S+RYHLLH YL+ R++EL+++++LR++LC VD ++ +PLLE+ K A+ +CTLL AWS E ARYLET K YENK A+ IQ ++D +Y SRL + LT+IR +NK++V TL S FGSLA +M A+ E++ +CP +GE KV+ L+ FHEPF R SS Sbjct: 131 ILVSNRQKGNPLLKHIRNVKWVFSE-IIPDYLLGQSTCALYLSLRYHLLHPDYLYFRIRELQKNFKLRIVLCHVDVEDSVKPLLEVTKTALLHDCTLLCAWSLTECARYLETIKVYENKPADLIQGQMDTDYLSRLNHSLTSIRHVNKSDVVTLGSTFGSLAHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRATSS 329
BLAST of NO01G05510 vs. NCBI_GenBank
Match: CDY27786.1 (BnaA05g31950D [Brassica napus]) HSP 1 Score: 213.4 bits (542), Expect = 1.700e-51 Identity = 105/200 (52.50%), Postives = 149/200 (74.50%), Query Frame = 0 Query: 150 ISLSPRQIGNPVLKHIKNVPYQIVEGLVPDFVLGAYTCCIYISIRYHLLHSKYLFQRVKELRRDYRLRLILCLVDDANNKEPLLEINKLAIRENCTLLLAWSTAEAARYLETYKAYENKSAESIQERVDDNYASRLANVLTTIRGINKTNVSTLSSNFGSLASMMAANKEEIIQCPDLGEVKVQNLWTAFHEPFIRKPSS 350 I +S RQ GNP+LKHI+NV + E ++PD++LG TC +Y+S+RYHLLH YL+ R++EL+++++LR++LC VD ++ +PLLE+ K A+ +CTLL AWS E ARYLET K YENK A+ IQ ++D +Y SRL + LT+IR +NK++V TL S FGSLA +M A+ E++ +CP +GE KV+ L+ FHEPF R SS Sbjct: 122 ILVSNRQKGNPLLKHIRNVKWVFSE-IIPDYLLGQTTCALYLSLRYHLLHPDYLYFRIRELQKNFKLRVVLCHVDVEDSVKPLLEVTKTALLHDCTLLCAWSLTECARYLETIKVYENKPADLIQGQMDTDYLSRLNHSLTSIRHVNKSDVVTLGSTFGSLAHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRAASS 320
BLAST of NO01G05510 vs. NCBI_GenBank
Match: XP_013750699.1 (DNA excision repair protein ERCC-1 [Brassica napus]) HSP 1 Score: 213.4 bits (542), Expect = 1.700e-51 Identity = 105/200 (52.50%), Postives = 149/200 (74.50%), Query Frame = 0 Query: 150 ISLSPRQIGNPVLKHIKNVPYQIVEGLVPDFVLGAYTCCIYISIRYHLLHSKYLFQRVKELRRDYRLRLILCLVDDANNKEPLLEINKLAIRENCTLLLAWSTAEAARYLETYKAYENKSAESIQERVDDNYASRLANVLTTIRGINKTNVSTLSSNFGSLASMMAANKEEIIQCPDLGEVKVQNLWTAFHEPFIRKPSS 350 I +S RQ GNP+LKHI+NV + E ++PD++LG TC +Y+S+RYHLLH YL+ R++EL+++++LR++LC VD ++ +PLLE+ K A+ +CTLL AWS E ARYLET K YENK A+ IQ ++D +Y SRL + LT+IR +NK++V TL S FGSLA +M A+ E++ +CP +GE KV+ L+ FHEPF R SS Sbjct: 118 ILVSNRQKGNPLLKHIRNVKWVFSE-IIPDYLLGQSTCALYLSLRYHLLHPDYLYFRIRELQKNFKLRVVLCHVDVEDSVKPLLEVTKTALLHDCTLLCAWSLTECARYLETIKVYENKPADLIQGQMDTDYLSRLNHSLTSIRHVNKSDVVTLGSTFGSLAHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRAASS 316
BLAST of NO01G05510 vs. NCBI_GenBank
Match: XP_009147264.1 (PREDICTED: DNA excision repair protein ERCC-1 [Brassica rapa]) HSP 1 Score: 213.4 bits (542), Expect = 1.700e-51 Identity = 104/200 (52.00%), Postives = 149/200 (74.50%), Query Frame = 0 Query: 150 ISLSPRQIGNPVLKHIKNVPYQIVEGLVPDFVLGAYTCCIYISIRYHLLHSKYLFQRVKELRRDYRLRLILCLVDDANNKEPLLEINKLAIRENCTLLLAWSTAEAARYLETYKAYENKSAESIQERVDDNYASRLANVLTTIRGINKTNVSTLSSNFGSLASMMAANKEEIIQCPDLGEVKVQNLWTAFHEPFIRKPSS 350 I +S RQ GNP+LKHI+NV + + ++PD++LG TC +Y+S+RYHLLH YL+ R++EL+++++LR++LC VD ++ +PLLE+ K A+ +CTLL AWS E ARYLET K YENK A+ IQ ++D +Y SRL + LT+IR +NK++V TL S FGSLA +M A+ E++ +CP +GE KV+ L+ FHEPF R SS Sbjct: 121 ILVSNRQKGNPLLKHIRNVKW-VFSDIIPDYLLGQTTCALYLSLRYHLLHPDYLYFRIRELQKNFKLRVVLCHVDVEDSVKPLLEVTKTALLHDCTLLCAWSLTECARYLETIKVYENKPADLIQGQMDTDYLSRLNHSLTSIRHVNKSDVVTLGSTFGSLAHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRAASS 319 The following BLAST results are available for this feature:
BLAST of NO01G05510 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO01G05510 ID=NO01G05510|Name=NO01G05510|organism=Nannochloropsis oceanica|type=gene|length=3215bpback to top protein sequence of NO01G05510.1 >NO01G05510.1-protein ID=NO01G05510.1-protein|Name=NO01G05510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=526bpback to top Synonyms
Publications
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