NO01G05500, NO01G05500 (gene) Nannochloropsis oceanica

Overview
NameNO01G05500
Unique NameNO01G05500
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1753
Alignment locationchr1:1508888..1510640 -

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1508888..1510640 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR032710NTF2-like_dom_sf
IPR037401SnoaL-like
Homology
BLAST of NO01G05500 vs. NCBI_GenBank
Match: WP_080057484.1 (nuclear transport factor 2 family protein [Spirosoma aerolatum])

HSP 1 Score: 101.3 bits (251), Expect = 2.800e-18
Identity = 59/147 (40.14%), Postives = 81/147 (55.10%), Query Frame = 0
Query:    9 AIAELLHKSQIEDLLSKQFLYVDGRWWDLLRTEIFA-TGLITMDNGDG--PLCTTSDEIVSRWQQTLGSLDAVLHQVGHYVITILNNNMAHAVTYGTATHYKASATQGHTRVFAGNYEFNLVFSYELGWRIKGLKFTLMFMDGNLSL 153
            ++AEL  K  I +L+++ F+Y D R W  LR EIF  T  + M++  G  P   T+  I   WQ     +DAV HQ GHY+IT L+ + A    Y  ATHY+ +A  G TR F G+Y+     +   GWRI  L + L + DGN SL
Sbjct:    7 SLAELQDKLAITELVNRLFMYTDDRNWQGLRNEIFTETVYLDMESNGGAPPGIVTAQSITDGWQTGFQGIDAVHHQGGHYLIT-LHGDQADVYGYAVATHYRTAAIHGKTRTFVGSYDIKAERTPN-GWRINQLTYNLKYADGNASL 151          
BLAST of NO01G05500 vs. NCBI_GenBank
Match: WP_009280894.1 (hypothetical protein [Fibrisoma limi] >CCH52310.1 hypothetical protein BN8_01300 [Fibrisoma limi BUZ 3])

HSP 1 Score: 95.5 bits (236), Expect = 1.500e-16
Identity = 52/142 (36.62%), Postives = 78/142 (54.93%), Query Frame = 0
Query:   16 KSQIEDLLSKQFLYVDGRWWDLLRTEIFATGLI----TMDNGDGPLCTTSDEIVSRWQQTLGSLDAVLHQVGHYVITILNNNMAHAVTYGTATHYKASATQGHTRVFAGNYEFNLVFSYELGWRIKGLKFTLMFMDGNLSLT 154
            + QI +++++ F+Y D + W  ++ E+FA  L     ++    G +  TS  +   WQQ    +DA+ H  G+Y++ I N N A    Y TATHYK +A  G TR F G+Y+ +LV   E GWRI    + L +  GNL LT
Sbjct:    7 REQIVEVVNRLFVYTDYQEWQKIQDEVFADNLFFDMSSLGGESGQM--TSKAVCDTWQQGFVGIDAINHLAGNYLVQI-NGNEADVFAYATATHYKKAANAGKTREFVGSYDLHLV-QTEKGWRIDRFTYNLKYASGNLDLT 144          
BLAST of NO01G05500 vs. NCBI_GenBank
Match: WP_014678663.1 (hypothetical protein [Solitalea canadensis] >AFD05435.1 hypothetical protein Solca_0291 [Solitalea canadensis DSM 3403])

HSP 1 Score: 94.7 bits (234), Expect = 2.600e-16
Identity = 53/142 (37.32%), Postives = 78/142 (54.93%), Query Frame = 0
Query:   13 LLHKSQIEDLLSKQFLYVDGRWWDLLRTEIFATGLITMD---NGDGPLC-TTSDEIVSRWQQTLGSLDAVLHQVGHYVITILNNNMAHAVTYGTATHYKASATQGHTRVFAGNYEFNLVFSYELGWRIKGLKFTLMFMDGNL 151
            +  + Q+ +L +K F+Y D + W  L+ E+F  G I +D    G G     T D + S W      +DAV HQ G++++T LNNN A    Y  A+HYKA+AT+G TR F G+Y          GWRI   K+ L +++GN+
Sbjct:    1 MTEREQLIELSNKLFIYTDYKEWQKLKEEVFVEGDIFIDMTSTGAGTAAKMTVDMVCSLWNVGFEGIDAVHHQSGNFLVT-LNNNEAAIYCYAIASHYKAAATEGKTREFVGSYNIGCE-KTAAGWRINSFKYNLKYINGNI 140          
BLAST of NO01G05500 vs. NCBI_GenBank
Match: WP_103787802.1 (hypothetical protein [Solitalea sp. HR-AV] >POY38545.1 hypothetical protein C3K47_03880 [Solitalea sp. HR-AV])

HSP 1 Score: 94.7 bits (234), Expect = 2.600e-16
Identity = 51/143 (35.66%), Postives = 85/143 (59.44%), Query Frame = 0
Query:   13 LLHKSQIEDLLSKQFLYVDGRWWDLLRTEIFATGL-ITMDN-GDG-PLCTTSDEIVSRWQQTLGSLDAVLHQVGHYVITILNNNMAHAVTYGTATHYKASATQGHTRVFAGNYEFNLVFSYELGWRIKGLKFTLMFMDGNLSL 153
            +  + Q+ +L +K F+Y D R W+ L+ E+F   + I M + G G P    + E+   W++    +DA+ HQ G+++++ +NN  A    Y  A+H+K SAT+G TR F G+Y    V S + GWR++  K+ L +++GNLSL
Sbjct:    1 MTEREQLIELANKLFIYTDYRQWEKLKNEVFTQNVRIDMSSLGAGEPKELPAIELCQLWEKGFEGIDAIHHQSGNFLVSTINNT-AEIYCYAIASHFKESATEGKTREFVGSYNLEAVKS-DKGWRLRSFKYNLKYINGNLSL 141          
BLAST of NO01G05500 vs. NCBI_GenBank
Match: WP_071890972.1 (hypothetical protein [Flavisolibacter tropicus])

HSP 1 Score: 94.0 bits (232), Expect = 4.400e-16
Identity = 51/139 (36.69%), Postives = 77/139 (55.40%), Query Frame = 0
Query:   16 KSQIEDLLSKQFLYVDGRWWDLLRTEIFATGLI--TMDNGDGPLCTTSDEIVSRWQQTLGSLDAVLHQVGHYVITILNNNMAHAVTYGTATHYKASATQGHTRVFAGNYEFNLVFSYELGWRIKGLKFTLMFMDGNLSL 153
            + QI ++++K F+Y D + W+ L+ E+F   ++      G   + TT+  I   W++    +DAV H  G+Y+I I  + +A    Y TATHYK +ATQG TR F G Y  +L   +  GWRI   K+ L +  GNL L
Sbjct:    7 REQIVEVVNKLFVYTDAQEWEKLQQEVFTEQVLFDMSSMGGKEMVTTAANICQIWKEGFTGVDAVNHLAGNYLINI-KDEIADVFAYATATHYKQAATQGKTREFVGTYNLHLT-RHGDGWRIDQFKYNLKYATGNLDL 143          
BLAST of NO01G05500 vs. NCBI_GenBank
Match: WP_033089453.1 (nuclear transport factor 2 family protein [Nocardia seriolae] >GAM48855.1 hypothetical protein NS07_v2contig00089-0009 [Nocardia seriolae] >GAP30803.1 hypothetical protein NSK11_contig00094-0033 [Nocardia seriolae] >APA99296.1 hypothetical protein NS506_05250 [Nocardia seriolae] >OJF80997.1 hypothetical protein NS14008_19590 [Nocardia seriolae] >BAW06780.1 conserved hypothetical protein [Nocardia seriolae] >PSK28898.1 nuclear transport factor 2 family protein [Nocardia seriolae])

HSP 1 Score: 87.4 bits (215), Expect = 4.100e-14
Identity = 56/146 (38.36%), Postives = 78/146 (53.42%), Query Frame = 0
Query:   10 IAELLHKSQIEDLLSKQFLYVDGRWWDLLRTEIFATGLITMDNGDGPL-CTTSDEIVSRWQQTLGSLDAVLHQVGHYVITILNNN-MAHAVTYGTATHYKASATQGHTRVFAGNYEFNLVFSYELGWRIKGLKFTLMFMDGNLSLT 154
            +A L  +  I D +++ F+Y D   W  LR  +FAT +       GP+      +IV  W+  LGSLDAV HQ G+++I I  +  +AHA +   A H K SA  G TR F G+Y   L  + E GWRI   ++ L  +DGN  LT
Sbjct:    4 LAALADRLDISDTITRLFVYCDQARWADLRESVFATEVFFDSGFGGPVGSRPGSDIVDDWETGLGSLDAVHHQAGNHLIEITGDTALAHADS--IAVHVKNSAQHGTTRWFIGSYVLGLART-EKGWRIDRFEYKLKAIDGNADLT 146          
BLAST of NO01G05500 vs. NCBI_GenBank
Match: OJW98147.1 (hypothetical protein BGO70_11815 [Bacteroidetes bacterium 43-93])

HSP 1 Score: 87.4 bits (215), Expect = 4.100e-14
Identity = 49/142 (34.51%), Postives = 71/142 (50.00%), Query Frame = 0
Query:   14 LHKSQIEDLLSKQFLYVDGRWWDLLRTEIFATGL---ITMDNGDGPLCTTSDEIVSRWQQTLGSLDAVLHQVGHYVITILNNNMAHAVTYGTATHYKASATQGHTRVFAGNYEFNLVFSYELGWRIKGLKFTLMFMDGNLSL 153
            + K  + +L +K F+Y D + W  L  E+F   L   ++   G       + E+   W +    LD V HQ GHY+I +     A    Y  A HYK SA  G TRVF G+Y+ N + +   GWR+   K+ L F+DGN +L
Sbjct:    1 MEKFHLTELANKLFMYTDAQRWQDLLDEVFVEELWFDMSSAGGGELRKLKAVELCDMWAEGFKGLDEVHHQAGHYLIDV-RKEEASIFAYAVAYHYKNSAANGKTRVFVGSYDLNAI-NTSKGWRLNQFKYNLKFIDGNTNL 140          
BLAST of NO01G05500 vs. NCBI_GenBank
Match: WP_067822228.1 (nuclear transport factor 2 family protein [Nocardia inohanensis])

HSP 1 Score: 87.0 bits (214), Expect = 5.400e-14
Identity = 56/146 (38.36%), Postives = 76/146 (52.05%), Query Frame = 0
Query:   10 IAELLHKSQIEDLLSKQFLYVD-GRWWDLLRTEIFATGLITMDNGDGPLCTTSDEIVSRWQQTLGSLDAVLHQVGHYVITILNNN-MAHAVTYGTATHYKASATQGHTRVFAGNYEFNLVFSYELGWRIKGLKFTLMFMDGNLSLT 154
            IA L  + ++ DL++K F+Y D  RW DL  + +          G  P      +IV  W + LGSLDAV HQ G+++I I  +  +AHA     A H K  ATQG TR F G+Y      + E GWRI   ++ L  +DGN  LT
Sbjct:    4 IAALAERLELGDLITKLFVYCDQARWSDLAESVLAEQVYFDSGFGGEPGPRAGSDIVDDWAEGLGSLDAVHHQAGNHLIEITGDTALAHA--DAIAVHLKNDATQGKTRWFVGSYVLGFERT-EKGWRINRFEYKLKLIDGNADLT 146          
BLAST of NO01G05500 vs. NCBI_GenBank
Match: WP_067710129.1 (nuclear transport factor 2 family protein [Nocardia yamanashiensis])

HSP 1 Score: 85.5 bits (210), Expect = 1.600e-13
Identity = 59/147 (40.14%), Postives = 77/147 (52.38%), Query Frame = 0
Query:   10 IAELLHKSQIEDLLSKQFLYVD-GRWWDLLRTEIFATGLITMDNG-DGPLCTTSD-EIVSRWQQTLGSLDAVLHQVGHYVITILNNNMAHAVTYGTATHYKASATQGHTRVFAGNYEFNLVFSYELGWRIKGLKFTLMFMDGNLSLT 154
            IA L  +  I DL++K F+Y D  RW DL   E      +  DNG  GP+ T    +I + W + LG+LDAV HQ G+++I I     A A     A H K  ATQG TR F G+Y      + E GWRI   ++ L  +DGN  LT
Sbjct:    4 IAALADRLDIGDLITKLFVYCDQARWGDL--AESVLAEQVYFDNGFGGPVGTRPGIDITNDWAEGLGALDAVHHQAGNHLIEI-TGGTAQAHADAIAVHLKNDATQGKTRWFVGSYALGFQRT-EKGWRIDRFEYQLKLIDGNADLT 146          
BLAST of NO01G05500 vs. NCBI_GenBank
Match: WP_079687221.1 (nuclear transport factor 2 family protein [Ohtaekwangia koreensis] >SKC71597.1 SnoaL-like domain-containing protein [Ohtaekwangia koreensis])

HSP 1 Score: 84.0 bits (206), Expect = 4.600e-13
Identity = 43/140 (30.71%), Postives = 77/140 (55.00%), Query Frame = 0
Query:   16 KSQIEDLLSKQFLYVDGRWWDLLRTEIFATG----LITMDNGDGPLCTTSDEIVSRWQQTLGSLDAVLHQVGHYVITILNNNM-AHAVTYGTATHYKASATQGHTRVFAGNYEFNLVFSYELGWRIKGLKFTLMFMDGNL 151
            + ++ +L +K F+Y D +WWD L  E+        + ++  G G    ++ EI   W+     +DAV HQ G++++   +  + A  + Y  A HYK +ATQG+TR F G+Y+ + V + + GWRI    + + + +GN+
Sbjct:    7 RDEVIELATKLFIYTDYQWWDKLLEEVLTENVWFDMSSLGAGAGK-NLSAKEICDMWKAGFAGIDAVHHQAGNFLVDFKSEAIEAKVLCYAIALHYKKAATQGNTREFVGSYDLHCVLT-DKGWRIDSFTYNIKYSNGNV 144          
The following BLAST results are available for this feature:
BLAST of NO01G05500 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
WP_080057484.12.800e-1840.14nuclear transport factor 2 family protein [Spiroso... [more]
WP_009280894.11.500e-1636.62hypothetical protein [Fibrisoma limi] >CCH52310.1 ... [more]
WP_014678663.12.600e-1637.32hypothetical protein [Solitalea canadensis] >AFD05... [more]
WP_103787802.12.600e-1635.66hypothetical protein [Solitalea sp. HR-AV] >POY385... [more]
WP_071890972.14.400e-1636.69hypothetical protein [Flavisolibacter tropicus][more]
WP_033089453.14.100e-1438.36nuclear transport factor 2 family protein [Nocardi... [more]
OJW98147.14.100e-1434.51hypothetical protein BGO70_11815 [Bacteroidetes ba... [more]
WP_067822228.15.400e-1438.36nuclear transport factor 2 family protein [Nocardi... [more]
WP_067710129.11.600e-1340.14nuclear transport factor 2 family protein [Nocardi... [more]
WP_079687221.14.600e-1330.71nuclear transport factor 2 family protein [Ohtaekw... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL000nonsL000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR059ngnoR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G05500.1NO01G05500.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|245869gene_579Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G05500.1NO01G05500.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G05500 ID=NO01G05500|Name=NO01G05500|organism=Nannochloropsis oceanica|type=gene|length=1753bp
CAACAGGGCGACGGACTGGGTGACCATGGTCAGGATAGACGCCTACGCAG
CTATAGCGGAGCTTCTACACAAGTCGCAGgtgcacaatctcaccactgtg
ggttttaagtgcttcactctatatgaccgactcagcggccgtgtttgtga
gacagtacactctgttagttgttattattgccgagattccggtggcggta
cttggccttgtccttgttcaagcctgcctcacgtccccttcccactcgac
ccactcccgtcctctgatagATTGAGGACCTCCTCTCTAAGCAGTTTTTG
TATGTTGACGGGCGTTGGTGGGATTTGCTCCGAACGGAAATCTTTGCAAC
Ggtgaggaaaggagggctggagggggggaagaggaagggataaggaaaaa
tagaagagattacggaggctctttcattcgtgtattttgaatcgtaagcc
caggattgctgtgtttaagcatagaatgcgcccgctggtgggcgaatgga
tttctccatctgatttggcggccgactgatttgtctttttttgcgcccac
gcgaatatgcatatctagGGCCTCATCACCATGGACAATGGAGACGGTCC
GCTATGTACCACGTCGGACGAGATTGTGTCAAGATGGCAGCAGACGTTGG
GCTCTCTTGACGCGGTCCTGCACCAGgtaaggaactgtcagcaagggtaa
tatcgaaagatgaacaagtcacggagtatggcaggcttcaggcgcattct
gttcactcattattcacatattttttatgacagGTCGGGCACTATGTCAT
AACAATATTGgttcgtaggggtgggggctgggtaatataatatttgtagc
cttgtccatgcccgcgagagactgacgtcctctccctccttccctccctc
cctcccttcctccccggcgtatcttctgtcgagtagAATAATAATATGGC
CCACGCCGTAACCTACGGTACAGCTACGCACTACAAAGCAAGTGCCACAC
AGGGACACACAAGGGTCTTCGCCGGGAATTACGAATTTAACTTGGTCTTC
TCTTATGAGCTGgtaggacacatgtgtatgctttggtgtggatgagggtc
ttggagaatgtccttcgtgaaatttgcaaggtgatgattttggttgatgt
ggagaaggcaatggatgttggagctctattcgccggtgtaaatcatgctg
gcccgcggaccctagtgcttgggcaggtggagggggctgggggatgataa
ggttgtcattttagagaccaaatgaatcgctaattcctgtcgttcacgcg
cctcatatatatcgctatacattcatatatagGGCTGGCGTATCAAGGGC
TTGAAGTTCACATTAATgtacgtgccagcagatggttggagggaggggtg
gggggaaaagaaaatggatgggggaaaaggatgagaagggcgtcagccac
catcgaactgctcctatgtctctcatcatatattccttctgcttcttcct
tattcctgctttgtttttcggcgttggctgtcggatatcatttttttcat
cgaaatgcaaagcctttcgatggcagtatcaggagcccaagcccgaagca
taaattctccctcctttcttttgtcttctctggtgcatcttactgtgaca
gtgcacctgtgaaaaacctggtctgccaaaattattgccttttcccttct
ccccttcttccttcctttgcagGTTTATGGACGGCAATCTGTCTCTGACG
TAA
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protein sequence of NO01G05500.1

>NO01G05500.1-protein ID=NO01G05500.1-protein|Name=NO01G05500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=154bp
MVRIDAYAAIAELLHKSQIEDLLSKQFLYVDGRWWDLLRTEIFATGLITM
DNGDGPLCTTSDEIVSRWQQTLGSLDAVLHQVGHYVITILNNNMAHAVTY
GTATHYKASATQGHTRVFAGNYEFNLVFSYELGWRIKGLKFTLMFMDGNL
SLT*
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Synonyms
Publications