NO01G05420, NO01G05420 (gene) Nannochloropsis oceanica

Overview
NameNO01G05420
Unique NameNO01G05420
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1088
Alignment locationchr1:1476877..1477964 +

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1476877..1477964 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006342FkbM_mtfrase
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO01G05420 vs. NCBI_GenBank
Match: XP_005854949.1 (hypothetical protein NGA_0359401 [Nannochloropsis gaditana CCMP526] >EKU21412.1 hypothetical protein NGA_0359401 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 256.1 bits (653), Expect = 1.000e-64
Identity = 115/205 (56.10%), Postives = 154/205 (75.12%), Query Frame = 0
Query:   29 LTEKIEAXXXXXXXXQRRFWLEPLEPVWQYRGKYYLGKTKDVEDKDQVTPFLLGNFIDASDKTLYRRRIYIDLGIKDFNSSLCWMMQNYPVKFDAMHGFECHTDM-TDVAALRDPINQCISGTAAENMGYTTEGTMDTLIVYHNFIGLDDDSETSPQTRGLSQFLKDINIQENDFVVLKMDVEGIEFSLLERMMADDTYKLIDEV 233
            L E+++         +RRFWL+PLEP++QYR K++LGKT DV+DKDQVTP+ L NF++ASDK +Y RRIYIDLG+ DF SS+CWMMQNYP KFD ++GFE    +  D+  L   I +C+ GT+AE  GY T   ++T   Y+NF+G +D++++SP TRGLSQF++DI I+ENDFVVLKMDVEG E+ +L R+M D TYK +DEV
Sbjct:   53 LKEEVQKLKAKVEIHERRFWLDPLEPIFQYRPKFWLGKTDDVDDKDQVTPYFLANFVNASDKNVYDRRIYIDLGLHDFKSSVCWMMQNYPTKFDLVYGFEADAKLHADIHTLASNITECVKGTSAEARGYKTHEVLNTFTFYYNFVGAEDNNKSSPPTRGLSQFVRDIGIKENDFVVLKMDVEGWEYDILSRIMDDGTYKFLDEV 257          
BLAST of NO01G05420 vs. NCBI_GenBank
Match: EWM20773.1 (Methyltransferase FkbM [Nannochloropsis gaditana])

HSP 1 Score: 255.8 bits (652), Expect = 1.400e-64
Identity = 116/209 (55.50%), Postives = 156/209 (74.64%), Query Frame = 0
Query:   25 SIPKLTEKIEAXXXXXXXXQRRFWLEPLEPVWQYRGKYYLGKTKDVEDKDQVTPFLLGNFIDASDKTLYRRRIYIDLGIKDFNSSLCWMMQNYPVKFDAMHGFECHTDM-TDVAALRDPINQCISGTAAENMGYTTEGTMDTLIVYHNFIGLDDDSETSPQTRGLSQFLKDINIQENDFVVLKMDVEGIEFSLLERMMADDTYKLIDEV 233
            +I  L E+++         +RRFWL+PLEP++QYR K++LGKT DV+DKDQVTP+ L NF++ASDK +Y RRIYIDLG+ DF SS+CWMMQNYP KFD ++GFE    +  D+  L   I +C+ GT+AE  GY T   ++T   Y+NF+G +D++++SP TRGLSQF++DI I+ENDFVVLKMDVEG E+ +L R+M D TYK +DEV
Sbjct:   57 TIRDLKEEVQKLKAKVEIHERRFWLDPLEPIFQYRPKFWLGKTDDVDDKDQVTPYFLANFVNASDKNVYDRRIYIDLGLHDFKSSVCWMMQNYPTKFDLVYGFEADGALHADIHTLASNITECVKGTSAEARGYKTHEVLNTFTFYYNFVGAEDNNKSSPPTRGLSQFVRDIGIKENDFVVLKMDVEGWEYDILSRVMDDGTYKFLDEV 265          
BLAST of NO01G05420 vs. NCBI_GenBank
Match: XP_005853913.1 (hypothetical protein NGA_0460801 [Nannochloropsis gaditana CCMP526] >EKU22448.1 hypothetical protein NGA_0460801 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 246.5 bits (628), Expect = 8.200e-62
Identity = 111/185 (60.00%), Postives = 144/185 (77.84%), Query Frame = 0
Query:   22 SSDSIPKLTEKIEAXXXXXXXXQRRFWLEPLEPVWQYRGKYYLGKTKDVEDKDQVTPFLLGNFIDASDKTLYRRRIYIDLGIKDFNSSLCWMMQNYPVKFDAMHGFECHTDMTDVAALRDPINQCISGTAAE-NMGYTTEGTMDTLIVYHNFIGLDDDSETSPQTRGLSQFLKDINIQENDFVVL 206
            S  S   L E+++A        Q+RFW EPLEP+WQYRGKYYLGKT D+EDKDQVTPF L NF++ASD  +Y+R+IYIDLGIKDF SSLCW+MQNYPVKFDA+HGFEC +D+++VAAL   I+ C+ GTAA+   GYT EG  + L +Y+N+IG D++  T P TRGLSQ +KD+NI+++D+VV+
Sbjct:   52 SVKSSQSLYERMQAVEENMKVLQKRFWQEPLEPIWQYRGKYYLGKTNDIEDKDQVTPFFLANFVNASDPAVYKRKIYIDLGIKDFYSSLCWIMQNYPVKFDAIHGFECASDLSNVAALSSQIDACVRGTAADLKQGYTPEGVKEILHIYYNYIGTDENPATQPPTRGLSQVMKDLNIEKDDYVVV 236          
BLAST of NO01G05420 vs. NCBI_GenBank
Match: EWM22800.1 (hypothetical protein Naga_100178g4 [Nannochloropsis gaditana])

HSP 1 Score: 238.0 bits (606), Expect = 2.900e-59
Identity = 105/162 (64.81%), Postives = 134/162 (82.72%), Query Frame = 0
Query:   44 QRRFWLEPLEPVWQYRGKYYLGKTKDVEDKDQVTPFLLGNFIDASDKTLYRRRIYIDLGIKDFNSSLCWMMQNYPVKFDAMHGFECHTDMTDVAALRDPINQCISGTAAE-NMGYTTEGTMDTLIVYHNFIGLDDDSETSPQTRGLSQFLKDINIQENDFVV 205
            Q+RFW EPLEP+WQYRGKYYLGKT DVEDKDQVTPF L NF++ASD  +Y+R+IYIDLGIKDF SSLCW+MQNYPVKFDA+HGFEC +D+++VAAL   I+ C+  +AA+   GYT EG  D L +Y+++IG D++  T P TRGLSQ +KD+NI+++D+VV
Sbjct:    5 QKRFWQEPLEPIWQYRGKYYLGKTNDVEDKDQVTPFFLANFVNASDPAVYKRKIYIDLGIKDFYSSLCWIMQNYPVKFDAIHGFECASDLSNVAALSSQIDACVRESAADLKQGYTPEGVKDILHIYYDYIGTDENPATQPPTRGLSQVMKDLNIEKDDYVV 166          
BLAST of NO01G05420 vs. NCBI_GenBank
Match: GAQ87076.1 (hypothetical protein KFL_003290130 [Klebsormidium nitens])

HSP 1 Score: 99.4 bits (246), Expect = 1.600e-17
Identity = 62/192 (32.29%), Postives = 98/192 (51.04%), Query Frame = 0
Query:   49 LEPLEPVWQYRGKYYLGKTKDVEDKDQVTPFLLGNFIDASDKTLYRRRIYIDLGIKDFNSSLCWMMQNYPVKFDAMHGFECHT----DMTDVAALRDPINQCISGTAAENMGYTTEGTMDTLIVYHNFIGLDDDSETSPQTRGLS--QFLK-DINIQENDFVVLKMDVEGIEFSLLERMMAD-DTYKLIDEV 233
            +E L P  Q+R +Y  G+  DVE    + P+LLGN +D +     RRR+++DLG   F +S  W M+ YPV+FD +H FE  T     +  +A L +P N                     +  Y   +G+ D   ++    G+   +F+K D+ I+E D  +LKMD+EG E+ +L  ++ D +   LIDE+
Sbjct:  133 IEELLPKLQFRPEYSYGQIHDVEGLGHIVPWLLGNQVDLNSA---RRRVFMDLGANRFETSTAWFMRTYPVEFDEIHAFEMTTVFIPPIEKLARLPNPPN---------------------ITAYRALVGIRDLPPSASGVPGIDILRFIKNDLRIKEEDTFILKMDIEGAEWDVLPLLLRDSEALALIDEL 300          
BLAST of NO01G05420 vs. NCBI_GenBank
Match: GAQ79019.1 (hypothetical protein KFL_000220530 [Klebsormidium nitens])

HSP 1 Score: 98.2 bits (243), Expect = 3.600e-17
Identity = 62/190 (32.63%), Postives = 98/190 (51.58%), Query Frame = 0
Query:   52 LEPVWQYRGKYYLGKTKDVEDKDQVTPFLLGNFIDASDKTLYRRRIYIDLGIKDFNSSLCWMMQNYPVKFDAMHGFECHTDMTD-----VAALRDPINQCISGTAAENMGYTTEGTMDTLIVYHNFIGLDDDSETSPQTRGLS--QFLK-DINIQENDFVVLKMDVEGIEFSLLERMM-ADDTYKLIDEV 233
            L P  Q+R  Y  G+T D ED   + P+LLGN +D +  +   RR+++DLG   FNSS  W M+NYPV FD +H FE   D+ +     + AL  P                       +  Y   +G+ D++ TS    G+   +F+  ++ I+E D +++KMD+EG E+ +L  ++ A    +LIDE+
Sbjct:  116 LHPELQFRPGYAHGQTDDCEDPSYLIPWLLGNQVDLNSAS---RRVFLDLGAAAFNSSTGWFMRNYPVDFDEIHAFEVVPDLFEPPYDVIGALPHP---------------------PVVTQYEMMVGVSDEANTSLGVPGVDILRFITGELRIREEDTLIVKMDIEGGEWEVLPALLEAPAVLRLIDEL 281          
BLAST of NO01G05420 vs. NCBI_GenBank
Match: XP_024367822.1 (uncharacterized protein LOC112278488 [Physcomitrella patens] >PNR26386.1 hypothetical protein PHYPA_030961 [Physcomitrella patens])

HSP 1 Score: 95.1 bits (235), Expect = 3.100e-16
Identity = 58/191 (30.37%), Postives = 99/191 (51.83%), Query Frame = 0
Query:   49 LEPLEPVWQYRGKYYLGKTKDVEDKDQVTPFLLGNFIDASDKTLYRRRIYIDLGIKDFNSSLCWMMQNYPVKFDAMHGFECHTDMTDV--AALRDPINQCISGTAAENMGYTTEGT----MDTLIVYHNFIGLDDDSETSPQTRGLSQFLKDINIQENDFVVLKMDVEGIEFSLLERMMAD-DTYKLIDEV 233
            +E L+P   +R  + L  T DVEDK  + P+L G  +D + +    RR+Y+DLG   F +S+ W  Q YP  F  +H FE    +  +  +   +  N     + A  +  T  G     +D +  Y+ F+   DD +++  TR + +   D+ +  +D VV+KMD+EG E+ +L+R + D +   +IDE+
Sbjct:  110 IEALDPRNNFRRGFSLKFTSDVEDKTAILPWLYGAKVDLNKRA---RRVYLDLGANSFRTSVTWFSQMYPCDFTEIHAFEVSPQLFKIPSSGFNEETNWVPENSHATRV-KTAPGVPNWMLDRIKTYNTFVSDGDDEKSTNITRFIKE---DLQLTADDAVVVKMDIEGAEWPILKRWLLDLEMANIIDEL 293          
BLAST of NO01G05420 vs. NCBI_GenBank
Match: ABK20978.1 (unknown [Picea sitchensis])

HSP 1 Score: 94.7 bits (234), Expect = 4.000e-16
Identity = 56/191 (29.32%), Postives = 102/191 (53.40%), Query Frame = 0
Query:   49 LEPLEPVWQYRGKYYLGKTKDVEDKDQVTPFLLGNFIDASDKTLYRRRIYIDLGIKDFNSSLCWMMQNYPVKFDAMHGFECHTDMTDVAALR-DPINQCISGTAAENMGYTT----EGTMDTLIVYHNFIGLDDDSETSPQTRGLSQFLK-DINIQENDFVVLKMDVEGIEFSLLERMMAD-DTYKLIDEV 233
            ++ L+    +R  + LG T DVED+  + P++L + ID + +    RR++ID+G   FN+S+ W M+ YP  F  +H FE +  +    +   D     + G     M   T    +  +D + +YH  +G  D+ + +     +++F+K ++ ++  D VV+K+D+EG E+  L R + D D  K+IDE+
Sbjct:  105 IDKLDDWRNFRRGFTLGFTPDVEDRTHILPWILASKIDLNQR---ERRVFIDVGANYFNTSVTWFMRMYPCDFTEIHAFESNAQLLQKPSRGFDEEANSVEGNPWSYMTKVTPEAPQWMLDRINIYHKMVG--DEDDIANNAINITRFIKEELQLKPTDTVVVKIDIEGGEWPTLRRWINDPDMPKIIDEL 290          
BLAST of NO01G05420 vs. NCBI_GenBank
Match: XP_024359293.1 (uncharacterized protein LOC112274233 [Physcomitrella patens] >PNR59386.1 hypothetical protein PHYPA_002177 [Physcomitrella patens])

HSP 1 Score: 94.7 bits (234), Expect = 4.000e-16
Identity = 60/191 (31.41%), Postives = 104/191 (54.45%), Query Frame = 0
Query:   49 LEPLEPVWQYRGKYYLGKTKDVEDKDQVTPFLLGNFIDASDKTLYRRRIYIDLGIKDFNSSLCWMMQNYPVKFDAMHGFECHTDM-----TDVAALRDPINQCISGTAAENMGYTTEGTMDTLIVYHNFIGLDDDSETSPQTRGLSQFLKD-INIQENDFVVLKMDVEGIEFSLLERMMAD-DTYKLIDEV 233
            +E L+ V+ +R  Y L    DVEDK  + P+LLGN +D +   L RRR+ +DLG   F++S+ W  + YP  F  +H FE   ++      D      P     S     N     +  +D + +Y+ F+   DD  T+     +++F+ + ++++  D VV+KMD+EG E+S+L+R MA+ +  +++DE+
Sbjct:  170 IEALDDVYNFRRGYALKYVADVEDKTHILPWLLGNRVDLN---LPRRRVLMDLGGNRFDTSVTWFNRMYPCDFTEVHVFEIDRNLFKFPKEDHEEFNGPFQNSAS-IMVRNAPPIPKWMIDRMKLYNVFVSDGDDPSTN--ALNITRFMTETLDLKAADTVVVKMDIEGSEWSILKRWMANPEIPRIVDEL 354          
BLAST of NO01G05420 vs. NCBI_GenBank
Match: OAE21832.1 (hypothetical protein AXG93_138s1030 [Marchantia polymorpha subsp. ruderalis])

HSP 1 Score: 92.4 bits (228), Expect = 2.000e-15
Identity = 56/189 (29.63%), Postives = 93/189 (49.21%), Query Frame = 0
Query:   49 LEPLEPVWQYRGKYYLGKTKDVEDKDQVTPFLLGNFIDASDKTLYRRRIYIDLGIKDFNSSLCWMMQNYPVKFDAMHGFECHTDMTDVAALRDPINQCIS----GTAAENMGYTTEGTMDTLIVYHNFIGLDDDSETSPQTRGLSQFLKDINIQENDFVVLKMDVEGIEFSLLERMMAD-DTYKLIDEV 233
            +E L+P+  YR    LG T D++DK Q+  + LG      D    +RR++IDLG  +F +S  W MQ YP  F  +H FE   ++       D     I     G      G+     ++ +  Y+ + G+ D+      TR + + LK   +   D V++KMD+EG E+++L   + D +  ++IDE+
Sbjct:  233 IERLDPLNNYRRGVALGFTTDLDDKTQIEQWFLGT---KEDLNKAKRRVFIDLGANEFTTSFLWFMQRYPCDFTEIHAFEADPNLFKFPTGWDEEANWIQEPGWGKVKSRAGFVPSWLLERIHYYNKYAGVVDNVSAVNITRFMKEELK---LTPEDTVIVKMDIEGAEWNILYDWVKDPEMPQIIDEL 415          
The following BLAST results are available for this feature:
BLAST of NO01G05420 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005854949.11.000e-6456.10hypothetical protein NGA_0359401 [Nannochloropsis ... [more]
EWM20773.11.400e-6455.50Methyltransferase FkbM [Nannochloropsis gaditana][more]
XP_005853913.18.200e-6260.00hypothetical protein NGA_0460801 [Nannochloropsis ... [more]
EWM22800.12.900e-5964.81hypothetical protein Naga_100178g4 [Nannochloropsi... [more]
GAQ87076.11.600e-1732.29hypothetical protein KFL_003290130 [Klebsormidium ... [more]
GAQ79019.13.600e-1732.63hypothetical protein KFL_000220530 [Klebsormidium ... [more]
XP_024367822.13.100e-1630.37uncharacterized protein LOC112278488 [Physcomitrel... [more]
ABK20978.14.000e-1629.32unknown [Picea sitchensis][more]
XP_024359293.14.000e-1631.41uncharacterized protein LOC112274233 [Physcomitrel... [more]
OAE21832.12.000e-1529.63hypothetical protein AXG93_138s1030 [Marchantia po... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL000nonsL000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR059ngnoR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G05420.1NO01G05420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G05420.1NO01G05420.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G05420 ID=NO01G05420|Name=NO01G05420|organism=Nannochloropsis oceanica|type=gene|length=1088bp
ATGAAAAATAGGTACATTTTCCATAGCAACGTAAACCTTAATGAGTCGAT
ATCTGCATTTCCGTCAAGCGACTCAATACCGAAGCTTACAGAAAAGATTG
AAGCACTTCAAGAGAAGTTAGATATTCTCCAAAGGAGgtatgtgcggttt
gaattcatctctgttatgtcaggatctgttctacgcgcgaaggaaatagt
tcgcttcatccgcgttatcaaccctcatctagGTTTTGGCTGGAACCCCT
CGAGCCTGTTTGGCAGTATCGCGGGAAGTATTACCTGGGCAAGACAAAGG
ATGTCGAAGACAAGGACCAGgtgagcagatacctctccacttttaaacct
tcccaactatgaaaacctccccattgtaagcaaggtcatgagcccttccc
gctagaaattctcttcaagccctccatcattcgataaatctcttcattat
gttacctctcgactatatctcatccccacaacgaactctctgagaatatc
ttgacctctacaaggtaacatggcagcacatgggatacttttccccccaa
ttccttgaccccttttttcaaccaacaatgtttgcgcttcccacttcagG
TGACACCGTTTTTGCTGGGCAATTTCATCGACGCTTCGGACAAAACATTA
TACAGGCGTAGAATCTACATCGACTTAGGTATTAAGGATTTTAATTCGAG
TCTATGCTGGATGATGCAGAACTACCCGGTTAAGTTCGATGCGATGCATG
GGTTTGAATGTCACACAGATATGACCGACGTGGCAGCCTTACGGGACCCT
ATAAATCAGTGCATCAGTGGGACTGCGGCAGAAAATATGGGCTACACCAC
AGAAGGGACGATGGATACTCTCATAGTGTACCACAATTTTATCGGTCTGG
ACGATGACTCGGAGACATCACCGCAAACGCGTGGCCTTAGCCAATTTCTA
AAAGATATTAACATACAAGAAAACGACTTTGTTGTGCTCAAGATGGACGT
TGAGGGAATCGAGTTCAGTCTATTGGAGCGTATGATGGCTGATGACACGT
ATAAGCTCATTGATGAGGTACGCACATTTGCAAAATAG
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protein sequence of NO01G05420.1

>NO01G05420.1-protein ID=NO01G05420.1-protein|Name=NO01G05420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=238bp
MKNRYIFHSNVNLNESISAFPSSDSIPKLTEKIEALQEKLDILQRRFWLE
PLEPVWQYRGKYYLGKTKDVEDKDQVTPFLLGNFIDASDKTLYRRRIYID
LGIKDFNSSLCWMMQNYPVKFDAMHGFECHTDMTDVAALRDPINQCISGT
AAENMGYTTEGTMDTLIVYHNFIGLDDDSETSPQTRGLSQFLKDINIQEN
DFVVLKMDVEGIEFSLLERMMADDTYKLIDEVRTFAK*
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Synonyms
Publications