NO01G05290, NO01G05290 (gene) Nannochloropsis oceanica

Overview
NameNO01G05290
Unique NameNO01G05290
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1245
Alignment locationchr1:1412060..1413304 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1412060..1413304 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO01G05290 vs. NCBI_GenBank
Match: EWM22751.1 (hypothetical protein Naga_100143g4 [Nannochloropsis gaditana])

HSP 1 Score: 87.0 bits (214), Expect = 1.500e-13
Identity = 107/419 (25.54%), Postives = 168/419 (40.10%), Query Frame = 0 
Query:    4 SRFANSFGNSICHEPVQDHVQAFLARYKLVVCMNFFVLFALCICSGFXXXXXXXXXXXMGNYKGPVGNSKSYQPYMDYQTKTTTMRPSSSSPAAARGRLRGLSRRDKG----ETLHKASSLHTYSSSSSPGAATHVPQSPPRRFVPGTLPQAEDKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSSTKPNADLLMTIAEDEREDIPAAPASAAVVDTLKDTFDARFMSIHTVGNAAPVQCTFSEALEGEKAMPSVHADLGLGVEEGGDQNVRAAFTNSEEK----REIA-ETWNAFKEADGINVDHSVASLCPLTPSRSEAQEEPAVEVEEVGVS---PNSQVMETEQSGHTVMAMEATEKELKGEPSQQMEEKVIMQLLHRRHPLDFIPPFVRDDIVCMN 411
            SR A+S  +   +    DH + F AR K V+CMNF +   LCICSG               ++  + +S S + +  Y    +    S+S   ++  RLR LS  + G    +  +K+SS    SSS  P ++THVPQ PP RF+PGTLPQ++D                                               ++S   + D        E     A   SA     +K+        + T  +  P+QCT  E         S   D  +   E GD N   A T+SEE      ++A +  + +   + +   HS +SLCPL  S   +   P  E + V  S   P+  + +   +G  +  +E+T +  + +  +     V       R PLD+IPPF  ++I C++
Sbjct:   17 SRPASSLLDERVNLQSYDHSKTFSARCKHVICMNFLIFLVLCICSGIF------------TFQANI-SSTSRRVHKQYTEDRSNKVSSTSLFRSSNWRLRRLSPEETGKRRRQKSYKSSSTSEPSSSQLPVSSTHVPQRPPPRFIPGTLPQSKDISTAPLAAKFAALDDASASAERSEGVRTAPMTKSNRDIKKVSGRKKLLNSLTSSIDARSETDASEVHTGEAQMTSAPPPVEMKEE-----EPLFTHEDVVPIQCTSHEM--------SRTMDFAISQVEDGDVNCVDA-TDSEEHLLSVEDVAMQAPDEYTSGEALASPHSPSSLCPLASSWIGSGNGPQREDKHVSESFELPSEAIRDAVTAGEILEILESTTELEEVDIPESGSASV-------RDPLDYIPPFALEEIACVD 401
The following BLAST results are available for this feature:
BLAST of NO01G05290 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22751.11.500e-1325.54hypothetical protein Naga_100143g4 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL000nonsL000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR059ngnoR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006288NSK006288Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G05290.1NO01G05290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577718gene_562Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100143g4gene7693Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G05290.1NO01G05290.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G05290 ID=NO01G05290|Name=NO01G05290|organism=Nannochloropsis oceanica|type=gene|length=1245bp
ATGCCCGCATCCCGGTTCGCGAACTCCTTTGGGAACAGCATCTGTCATGA
GCCCGTGCAAGATCATGTCCAGGCCTTCCTCGCCCGCTACAAGTTGGTGG
TCTGCATGAATTTCTTCGTACTTTTTGCACTGTGCATCTGCAGTGGCTTC
TTCAGCAGCAGTAGCAGCAGCAGCAGCAGTCAGATGGGCAATTATAAAGG
TCCTGTCGGCAACAGCAAATCTTACCAGCCGTACATGGACTACCAAACAA
AAACTACCACTATGCGACCTTCTTCCTCGTCACCCGCGGCAGCACGGGGG
CGGCTTCGTGGCCTGTCTCGTAGGGATAAGGGGGAGACACTGCACAAAGC
GTCAAGTTTGCACACTTATTCCTCATCGTCCTCACCGGGGGCAGCCACAC
ATGTGCCACAGAGCCCTCCGCGTCGTTTTGTTCCGGGTACGCTGCCACAG
GCTGAGGACAAGCCGGTTGTGGTCGCAACGAGTGCTGCAGCATCACCCCC
GCCGGCAGAGACAACCAGCATGCCCACGAAATCAACAACAGCAAGCAAGA
CAGGAACCAGCAACGGTTCGAGCAAGAAAAAGGCCTTGCTAAGCAATCTG
GTGTCCTCGACAAAACCTAACGCAGACTTGTTAATGACCATTGCGGAGGA
TGAAAGGGAAGACATACCTGCAGCCCCGGCCTCAGCGGCAGTGGTAGACA
CCTTGAAAGATACTTTCGATGCACGCTTCATGTCGATCCACACCGTAGGG
AACGCAGCCCCTGTGCAGTGTACATTCAGTGAGGCTCTTGAGGGAGAGAA
AGCCATGCCTTCCGTTCATGCCGACCTCGGACTTGGTGTCGAAGAGGGTG
GTGACCAGAACGTCAGGGCAGCATTTACAAACTCTGAAGAGAAGAGAGAG
ATAGCTGAAACCTGGAATGCATTTAAAGAAGCTGATGGAATCAACGTCGA
TCATTCTGTCGCCTCTTTATGCCCCCTCACGCCATCACGGTCAGAAGCTC
AGGAAGAGCCTGCTGTTGAGGTGGAGGAAGTGGGTGTGTCACCAAACTCT
CAAGTCATGGAAACTGAACAGTCGGGGCATACGGTAATGGCAATGGAGGC
AACAGAGAAGGAGTTAAAAGGGGAGCCAAGCCAGCAGATGGAAGAAAAGG
TGATTATGCAATTGCTGCACCGGCGCCATCCGCTTGACTTCATTCCCCCC
TTTGTCCGTGATGACATCGTTTGCATGAATACGCAGGGGGCTTAA
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protein sequence of NO01G05290.1

>NO01G05290.1-protein ID=NO01G05290.1-protein|Name=NO01G05290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=415bp
MPASRFANSFGNSICHEPVQDHVQAFLARYKLVVCMNFFVLFALCICSGF
FSSSSSSSSSQMGNYKGPVGNSKSYQPYMDYQTKTTTMRPSSSSPAAARG
RLRGLSRRDKGETLHKASSLHTYSSSSSPGAATHVPQSPPRRFVPGTLPQ
AEDKPVVVATSAAASPPPAETTSMPTKSTTASKTGTSNGSSKKKALLSNL
VSSTKPNADLLMTIAEDEREDIPAAPASAAVVDTLKDTFDARFMSIHTVG
NAAPVQCTFSEALEGEKAMPSVHADLGLGVEEGGDQNVRAAFTNSEEKRE
IAETWNAFKEADGINVDHSVASLCPLTPSRSEAQEEPAVEVEEVGVSPNS
QVMETEQSGHTVMAMEATEKELKGEPSQQMEEKVIMQLLHRRHPLDFIPP
FVRDDIVCMNTQGA*
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Synonyms
Publications