NO01G05260, NO01G05260 (gene) Nannochloropsis oceanica

Overview
NameNO01G05260
Unique NameNO01G05260
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1760
Alignment locationchr1:1403408..1405167 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1403408..1405167 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO01G05260 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G05260.1NO01G05260.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577694gene_559Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G05260.1NO01G05260.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G05260 ID=NO01G05260|Name=NO01G05260|organism=Nannochloropsis oceanica|type=gene|length=1760bp
CACCCTACAGCACAGAATTTATGCCCTCTGTCGGCTGCCGTTCCAGCGCT
GCGGCCATTTTGGATGTCGTCCCTCAAGCGTCCAAGCTTTGTAGTGACCA
CATGCAGACACCTCTCTCCTCCCATACGTCACCGCTAGCATCGCATGTGG
CTGCCAAGTTTACGACTTGGCTGCAGGAGGATAACCACCCTTACCGTGCC
CTTTGCCAAGAAGATAGCGAGgcaagtcgatagcccattaagaaatattc
catgccatccttaacaatcgccacactttcacattattcgtcgctcatca
atcaaatttgcttttaactcaatatccctcttcgatagGCCCGTGTCCAC
GTCATTGTAAGGTTGCTTCACAAGTTCTTGATGCTTTGCAAGGCTAGGCC
TTCTCACCCTTTGGAGAGCCAGGAGGTACTTGAGCTCTGGGAGAACAACA
AGGAGCTGTTTGAATCCATAGTCAATTATACTGCCACAACGCTGCACTGT
TGgtaagaatgaagggcaatggaggaccggggcagctttgtaaaaagacc
aatgtagtgatattttgagcatctaatcagctcttcttcttttttcttgc
acatccccgcaccgaaatttctcatgacagGCGGTCATTCGTCTGTTTTT
TGAAGCAAAAGGTAGAAATGAGTGAGAGCATCAGCACTGCCATTGCCACC
CCTGCCACCACTACTAGGTGCGGCAAAGGTCAGACCGTAGAGAAGGTCAT
GTCATCTGAGAACTTTGTCATTCTACCCGCAGTCGCTCCAACCATTACAA
ATCACTCCAGCCCCGTTATTGCCGGCACTGATCTCCTCAAAGATCTATCG
TGGGCCGTCGTCCGTCATAAATCGGGCTCAATGGCCAAGCTCCGACCGGT
CTACCAGCCCAAGACTGGTGAGGCAATGATCGAGGAGGCGTTGAATACAC
GAGAGCAGGCACACTTGCCGCCACAGACGTACCACCAAACAAAGGTCTAT
CCGCCACCTAACCGCCCTGGAGCCACTGCCATACCAATCATGTGGCCACC
ATCGCCCAGCTTTGAATCCATGGGGAGGGTAATTTCACGATCACATTTAC
CCCCCATCTCCTCTTCCTCCATGCGCATCAAGCTCACCAAGAGGAAACGC
ACGCTGGCCCAACACTTGCAACAGTCCGGCAAAAGGAGGAAAACAAATCT
TTTAGTACTTGATCGACGTGAGCAGCAGTTGCTGCGGAAATCGCTATCTC
TACCACCTACTTCCTCCTCCATCATATTACAAGCGGACAATACAACCTCA
CCTGCGGGAGCCAAAATGGACGAAGGCATTGCGGATGATGAGAAAGTTGT
GATCACCACTGCTGACACAGCTTGTGGCTGTTCTGGAGGTTCTATCTTGT
CGGCAGTAGAGGGATATGAATCTTACTATTGCAAAGAAACCACTGTGGCT
CAGACCTTACTCTCTTTAGCATCGGCATCCTGGAAGAAGAGTACTTCTAC
TATTGCCCGCAAGCCAGAAGCACAAGGCAAGAATAGCATCACAAGTACCA
ATAGCTGTCACCCTCCGAGCCATGATTCTATTCAAATTTAGTTTCACAAA
CGAAATGAGCATTGTGACGGATGTTTAAAGAGACTTCGCGCACGGGAATG
TAGTTATGAGAGGTCATCAGGCCCGGAAGTATGAGATGTGACTTTTCCCC
CAACAAAAATTATCCAATTACCTTGACGACAGAAAGGTCGAAGTGTGATA
AAATTAGAGG
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protein sequence of NO01G05260.1

>NO01G05260.1-protein ID=NO01G05260.1-protein|Name=NO01G05260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=442bp
MPSVGCRSSAAAILDVVPQASKLCSDHMQTPLSSHTSPLASHVAAKFTTW
LQEDNHPYRALCQEDSEARVHVIVRLLHKFLMLCKARPSHPLESQEVLEL
WENNKELFESIVNYTATTLHCWRSFVCFLKQKVEMSESISTAIATPATTT
RCGKGQTVEKVMSSENFVILPAVAPTITNHSSPVIAGTDLLKDLSWAVVR
HKSGSMAKLRPVYQPKTGEAMIEEALNTREQAHLPPQTYHQTKVYPPPNR
PGATAIPIMWPPSPSFESMGRVISRSHLPPISSSSMRIKLTKRKRTLAQH
LQQSGKRRKTNLLVLDRREQQLLRKSLSLPPTSSSIILQADNTTSPAGAK
MDEGIADDEKVVITTADTACGCSGGSILSAVEGYESYYCKETTVAQTLLS
LASASWKKSTSTIARKPEAQGKNSITSTNSCHPPSHDSIQI*
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Synonyms
Publications