NO01G05120, NO01G05120 (gene) Nannochloropsis oceanica

Overview
NameNO01G05120
Unique NameNO01G05120
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1845
Alignment locationchr1:1361357..1363201 +

Link to JBrowse

Properties
Property NameValue
DescriptionSmall ubiquitin-like modifier
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1361357..1363201 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR029071Ubiquitin-rel_dom
IPR022617Rad60/SUMO-like_dom
IPR000626Ubiquitin-like
Homology
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BLAST of NO01G05120 vs. NCBI_GenBank
Match: EWM29451.1 (small ubiquitin-like modifier [Nannochloropsis gaditana])

HSP 1 Score: 81.6 bits (200), Expect = 1.700e-12
Identity = 49/93 (52.69%), Postives = 53/93 (56.99%), Query Frame = 0 
Query:    7 MATVKTD----EPKGESIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKGINSNALRFLLDGLRIEKHQTPEELDLEDEDQIDVMLEQLGG 96
            MATVKTD    EPK ESI                               RKG+N ++LRFLLDG RIEKHQT  EL+LEDEDQIDVMLEQLGG
Sbjct:   22 MATVKTDTTATEPKSESITLRVKDQTGEETMFKVKKTTKMEKVFASYAGRKGVNVDSLRFLLDGQRIEKHQTSAELELEDEDQIDVMLEQLGG 114
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BLAST of NO01G05120 vs. NCBI_GenBank
Match: XP_002903234.1 (small ubiquitin-like modifier (SUMO), putative [Phytophthora infestans T30-4] >XP_002903269.1 conserved hypothetical protein [Phytophthora infestans T30-4] >EEY55658.1 small ubiquitin-like modifier (SUMO), putative [Phytophthora infestans T30-4] >EEY55693.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 63.2 bits (152), Expect = 6.100e-7
Identity = 31/46 (67.39%), Postives = 37/46 (80.43%), Query Frame = 0 
Query:   52 RKGINSNALRFLLDGLRIEKHQTPEELDLEDEDQIDVMLEQLGGHR 98
            RKG+ ++ALRFLLDG RI   QTP+ L+LEDEDQID  LEQ+GG R
Sbjct:   55 RKGVPASALRFLLDGTRISGDQTPKMLELEDEDQIDCALEQVGGFR 100
The following BLAST results are available for this feature:
BLAST of NO01G05120 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM29451.11.700e-1252.69small ubiquitin-like modifier [Nannochloropsis gad... [more]
XP_002903234.16.100e-767.39small ubiquitin-like modifier (SUMO), putative [Ph... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007747NSK007747Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G05120.1NO01G05120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100083g7gene1184Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G05120.1NO01G05120.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G05120 ID=NO01G05120|Name=NO01G05120|organism=Nannochloropsis oceanica|type=gene|length=1845bp
CTCCTTATGATCCCACCATTTTCATTTAAAACCGCATGTCCCACATTGCA
CACAAGGCCATCACCACCACGCGTCTTTCTGTATTGCCTTCTCTTTATGA
TTATGCGGTAGGCACGCTGCTTGGATCTTGCAAGCCTTGTCCGTCATATG
CAAGCACGGCTAGCACTTGGCTCATCATGCTTTTATGCCGTCACCTCCCT
CACCTTCCCCTCTTCTCTATGCACATCATCACGCACAGCGTAAGGCACAT
TTGGGTATCACCACCATCTCCAGCAATACTATCTCTACAATAACATACGG
CTATAGCAACGTGCGGACAGGGACGCAGCCAACAAATAAAATAACGACAA
AAACGTAGTCCTCAACCCTGACGAGGGTACATTACCGAGGCCGCGCGAAA
GAGTGAGAGCTCACGTTGGAAGTGAGAAGCAGGACGTGACGAAAGTAGTA
GAGCTGGACCGTGCAAAAGGCCGGCAACAATGCCTCGCTCTCTGCGCATG
TAATGCATGTTTCAAATACCTACATTGCGTCTTCGAAACGCCGCCTTTCC
CCTTCACGAGTAGGGGAAGAAAGGGCAAACAAATCATTCAGGCCGAGAGA
GATGAGAAGAGACTCGATCGAGGACTGAGAGACGAAAAAGCACGCATTTA
AAAGCAACTAGGCCTTGCTCAAATGCTTCTACAATCCTTCTCTTCATCCT
CTAACCCCTCCCTTCCTCCCTCCCCTTAACTCACATTCAACAGCCAGCCA
CCACACCACCACAAGGACAGCAGCAGCAGGAGCAGAAGCAGCAGCAGTAC
CAATGACATCACCAGCAGCAATGGCTACCGTAAAGACAGACGAGCCCAAG
GGAGAGAGTATCACTTTGCGAGTCAAGGACCAGACGGGAGAGGAGACAAT
GTTCAAGgtagaaacagagggagggagggagggagggagggaggaacaaa
gaaaggtatgttatgaatagaaaaatgtgatcggcgccaatgcacggtga
agtgaaataaaatttgtcgcgactcagatttctcgtcctcatccctctct
ccttccctccctcttctccccaaacagGTGAAGAAGACAACTAAGATGGA
GAAAGTCTTCAACACATATGCCACACGCAAGGGCATCAACTCCAATGCTC
TCCGTTTCCTCCTCGACGGGCTGgtaaggcgaggaagggaggaagggaag
gagggagggagggagggagggaggggaggtggggaaatgacgtcttcggc
agcgttgggcttgccgctaccattcacgctcttttctctttttcttctca
ctatcacatgtggagggaagaaggaagggagggaagaaaggaaggaggga
gggaggaatgatgaaccgaatgactcaggccgacgtttttatttcatttt
acagCGAATCGAGAAACATCAAACGCCTGAAGAGCTGGACCTGGAAGACG
AGGATCAGgtgaggagggagggagggagggagggagggaggggcggacga
agggggagacaagtgcgatgtaaagatgtttatatactcagatgtcggca
agtgagggaaatagggaaggaatgattgaagattctcatgttccttctct
tgctcttcacggcccatgtctagATCGACGTCATGCTGGAGCAGCTTGGG
GGGCATCGATTACGGTCACAAAACCATTTAGCTGTACAAGAAAAGAATGA
GAAATGAAGAAGAGACAGAAAGAGGGAGAGGGAGAGGGAGAAAGAGAAAA
AGAAGAGAGATAGGAGGGGGAGAGCGGCCTGGATTAGAAAACGAGGAAAG
ATGAAAGAGAAAATCAAAGCAAATCTCACTCTTGACCACCAAGAC
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protein sequence of NO01G05120.1

>NO01G05120.1-protein ID=NO01G05120.1-protein|Name=NO01G05120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=113bp
MTSPAAMATVKTDEPKGESITLRVKDQTGEETMFKVKKTTKMEKVFNTYA
TRKGINSNALRFLLDGLRIEKHQTPEELDLEDEDQIDVMLEQLGGHRLRS
QNHLAVQEKNEK*
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Synonyms
Publications