NO01G05110, NO01G05110 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO01G05110 vs. NCBI_GenBank
Match: EWM29439.1 (origin recognition complex subunit 4 [Nannochloropsis gaditana]) HSP 1 Score: 233.8 bits (595), Expect = 5.500e-58 Identity = 128/220 (58.18%), Postives = 152/220 (69.09%), Query Frame = 0 Query: 1 MEPPADLSPSARKRP---------XXXXXXXXXNIDTLQDIHGMPSLQAAIIAARALLKRRLSPGYLPPPSDPAPLGLEAQSSQIQELLVKALDKRMHEPFLLVGSRGTGKSLCLEHAFARLRERYRVQGKLRPFRVVYVNGRMESTDVGAISEIAAQLEMSKTLDTSKRRSTXXXXXXXXXXXXXARNQ-LDFVVEGMRSGTFEETPLVFVIDNIEEFA 211 M A SP RKRP ++D+L+D+ G P+L + + A+AL KRRLS Y+PPPS PAPLGLE Q++QI ELLVKAL+ +MH+PFLLVGSRGTGKSLCLEHAFARLRERYR + RPFRVVYV+G +ESTD A++EIAAQLEMSK LDTSK++ T NQ L F+VE MR GT EETPLVFVID+IE FA Sbjct: 30 MGSSAASSPERRKRPRSGGDASLCPSSPTPSAPDLDSLEDLRGTPALMSVVSEAQALFKRRLSASYIPPPSLPAPLGLETQAAQIYELLVKALENKMHDPFLLVGSRGTGKSLCLEHAFARLRERYRARQVARPFRVVYVDGWLESTDATAMAEIAAQLEMSKALDTSKKKFTGGSAAGGQGGLGCGANQHLQFIVEAMRRGTSEETPLVFVIDHIEAFA 249
BLAST of NO01G05110 vs. NCBI_GenBank
Match: XP_014772349.1 (PREDICTED: origin recognition complex subunit 4-like isoform X1 [Octopus bimaculoides] >XP_014772350.1 PREDICTED: origin recognition complex subunit 4-like isoform X1 [Octopus bimaculoides] >KOF88529.1 hypothetical protein OCBIM_22014718mg [Octopus bimaculoides]) HSP 1 Score: 65.5 bits (158), Expect = 2.600e-7 Identity = 45/162 (27.78%), Postives = 82/162 (50.62%), Query Frame = 0 Query: 49 LKRRLSPGYLPPPSDPAPLGLEAQSSQIQELLVKALDKRMHEPFLLVGSRGTGKSLCLEHAFARLRERYRVQGKLRPFRVVYVNGRMESTDVGAISEIAAQLEMSKTLDTSKRRSTXXXXXXXXXXXXXARNQLDFVVEGMRSGTFEETPLVFVIDNIEEFA 211 L+ RL ++P AP+G + + QI +L+ + ++ LL+G+RG GK++ L++A +++ V L VY++G +++ D A+ EIA QL + T+ S A N L F++E ++SG P++F++D + FA Sbjct: 18 LRERLGQCWVP----EAPVGFKEEEQQIADLVKRTINFGESNSVLLIGTRGIGKTMLLKNALKEVKKDKNVHQNLLE---VYLSGLLQTNDKIALKEIARQLHLDNTVGDKVFGS-------------FAEN-LQFLLESLKSGGQHSKPILFILDEFDLFA 158
BLAST of NO01G05110 vs. NCBI_GenBank
Match: XP_014772351.1 (PREDICTED: origin recognition complex subunit 4-like isoform X2 [Octopus bimaculoides]) HSP 1 Score: 65.5 bits (158), Expect = 2.600e-7 Identity = 45/162 (27.78%), Postives = 82/162 (50.62%), Query Frame = 0 Query: 49 LKRRLSPGYLPPPSDPAPLGLEAQSSQIQELLVKALDKRMHEPFLLVGSRGTGKSLCLEHAFARLRERYRVQGKLRPFRVVYVNGRMESTDVGAISEIAAQLEMSKTLDTSKRRSTXXXXXXXXXXXXXARNQLDFVVEGMRSGTFEETPLVFVIDNIEEFA 211 L+ RL ++P AP+G + + QI +L+ + ++ LL+G+RG GK++ L++A +++ V L VY++G +++ D A+ EIA QL + T+ S A N L F++E ++SG P++F++D + FA Sbjct: 18 LRERLGQCWVP----EAPVGFKEEEQQIADLVKRTINFGESNSVLLIGTRGIGKTMLLKNALKEVKKDKNVHQNLLE---VYLSGLLQTNDKIALKEIARQLHLDNTVGDKVFGS-------------FAEN-LQFLLESLKSGGQHSKPILFILDEFDLFA 158
BLAST of NO01G05110 vs. NCBI_GenBank
Match: ORX90963.1 (origin recognition complex, subunit 4 [Basidiobolus meristosporus CBS 931.73]) HSP 1 Score: 65.5 bits (158), Expect = 2.600e-7 Identity = 39/144 (27.08%), Postives = 73/144 (50.69%), Query Frame = 0 Query: 67 LGLEAQSSQIQELLVKALDKRMHEPFLLVGSRGTGKSLCLEHAFARLRERYRVQGKLRPFRVVYVNGRMESTDVGAISEIAAQLEMSKTLDTSKRRSTXXXXXXXXXXXXXARNQLDFVVEGMRSGTFEETPLVFVIDNIEEFA 211 +GLE Q ++I +LL + + + LL+G RG+GKS+ + L ++Y V K + F V++NG +++ D A+ EI QL + + D++ S L F++ ++ G+ + +VF++D + FA Sbjct: 32 VGLEEQEAKIYDLLERTVSQGESNSALLIGQRGSGKSMLVNRVLQNLTQKYHVDNK-KDFYQVHLNGLVQTDDRIALKEIIRQLSLEEEFDSTLSSS--------------FAETLAFLLNLLKQGSKDNVSIVFILDEFDLFA 160
BLAST of NO01G05110 vs. NCBI_GenBank
Match: CDS05825.1 (hypothetical protein LRAMOSA08353 [Lichtheimia ramosa]) HSP 1 Score: 65.1 bits (157), Expect = 3.400e-7 Identity = 46/173 (26.59%), Postives = 82/173 (47.40%), Query Frame = 0 Query: 38 LQAAIIAARALLKRRLSPGYLPPPSDPAPLGLEAQSSQIQELLVKALDKRMHEPFLLVGSRGTGKSLCLEHAFARLRERYRVQGKLRPFRVVYVNGRMESTDVGAISEIAAQLEMSKTLDTSKRRSTXXXXXXXXXXXXXARNQLDFVVEGMRSGTFEETPLVFVIDNIEEFA 211 LQ + AR+ L RLS PP L+ Q + + +LL + + K LL+G+RG GK++ + A L ++Y + F V+ +NG+ E+TD A+SEIA QL + + ++ D+++ +++G P++F++D + FA Sbjct: 71 LQHQVACARSRLLERLSEKSSPPQM----YCLQDQYATLYDLLDQTVSKGESNSCLLIGNRGVGKTMLVRRALEDLDKQYNRTSEASNFCVIRLNGQTETTDRLALSEIARQLFLQQKQPQQQQSRQFASF----------AESFDYLLSLIKAGDKSTLPIIFILDEFDLFA 229 The following BLAST results are available for this feature:
BLAST of NO01G05110 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 5
Relationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO01G05110 ID=NO01G05110|Name=NO01G05110|organism=Nannochloropsis oceanica|type=gene|length=1060bpback to top protein sequence of NO01G05110.1 >NO01G05110.1-protein ID=NO01G05110.1-protein|Name=NO01G05110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=235bpback to top Synonyms
Publications
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