NO01G05110, NO01G05110 (gene) Nannochloropsis oceanica

Overview
NameNO01G05110
Unique NameNO01G05110
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1060
Alignment locationchr1:1360095..1361154 -

Link to JBrowse

Properties
Property NameValue
DescriptionOrigin recognition complex subunit 4
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1360095..1361154 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
Vocabulary: Biological Process
TermDefinition
GO:0006260DNA replication
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0000808origin recognition complex
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Homology
BLAST of NO01G05110 vs. NCBI_GenBank
Match: EWM29439.1 (origin recognition complex subunit 4 [Nannochloropsis gaditana])

HSP 1 Score: 233.8 bits (595), Expect = 5.500e-58
Identity = 128/220 (58.18%), Postives = 152/220 (69.09%), Query Frame = 0
Query:    1 MEPPADLSPSARKRP---------XXXXXXXXXNIDTLQDIHGMPSLQAAIIAARALLKRRLSPGYLPPPSDPAPLGLEAQSSQIQELLVKALDKRMHEPFLLVGSRGTGKSLCLEHAFARLRERYRVQGKLRPFRVVYVNGRMESTDVGAISEIAAQLEMSKTLDTSKRRSTXXXXXXXXXXXXXARNQ-LDFVVEGMRSGTFEETPLVFVIDNIEEFA 211
            M   A  SP  RKRP                  ++D+L+D+ G P+L + +  A+AL KRRLS  Y+PPPS PAPLGLE Q++QI ELLVKAL+ +MH+PFLLVGSRGTGKSLCLEHAFARLRERYR +   RPFRVVYV+G +ESTD  A++EIAAQLEMSK LDTSK++ T               NQ L F+VE MR GT EETPLVFVID+IE FA
Sbjct:   30 MGSSAASSPERRKRPRSGGDASLCPSSPTPSAPDLDSLEDLRGTPALMSVVSEAQALFKRRLSASYIPPPSLPAPLGLETQAAQIYELLVKALENKMHDPFLLVGSRGTGKSLCLEHAFARLRERYRARQVARPFRVVYVDGWLESTDATAMAEIAAQLEMSKALDTSKKKFTGGSAAGGQGGLGCGANQHLQFIVEAMRRGTSEETPLVFVIDHIEAFA 249          
BLAST of NO01G05110 vs. NCBI_GenBank
Match: XP_014772349.1 (PREDICTED: origin recognition complex subunit 4-like isoform X1 [Octopus bimaculoides] >XP_014772350.1 PREDICTED: origin recognition complex subunit 4-like isoform X1 [Octopus bimaculoides] >KOF88529.1 hypothetical protein OCBIM_22014718mg [Octopus bimaculoides])

HSP 1 Score: 65.5 bits (158), Expect = 2.600e-7
Identity = 45/162 (27.78%), Postives = 82/162 (50.62%), Query Frame = 0
Query:   49 LKRRLSPGYLPPPSDPAPLGLEAQSSQIQELLVKALDKRMHEPFLLVGSRGTGKSLCLEHAFARLRERYRVQGKLRPFRVVYVNGRMESTDVGAISEIAAQLEMSKTLDTSKRRSTXXXXXXXXXXXXXARNQLDFVVEGMRSGTFEETPLVFVIDNIEEFA 211
            L+ RL   ++P     AP+G + +  QI +L+ + ++       LL+G+RG GK++ L++A   +++   V   L     VY++G +++ D  A+ EIA QL +  T+      S              A N L F++E ++SG     P++F++D  + FA
Sbjct:   18 LRERLGQCWVP----EAPVGFKEEEQQIADLVKRTINFGESNSVLLIGTRGIGKTMLLKNALKEVKKDKNVHQNLLE---VYLSGLLQTNDKIALKEIARQLHLDNTVGDKVFGS-------------FAEN-LQFLLESLKSGGQHSKPILFILDEFDLFA 158          
BLAST of NO01G05110 vs. NCBI_GenBank
Match: XP_014772351.1 (PREDICTED: origin recognition complex subunit 4-like isoform X2 [Octopus bimaculoides])

HSP 1 Score: 65.5 bits (158), Expect = 2.600e-7
Identity = 45/162 (27.78%), Postives = 82/162 (50.62%), Query Frame = 0
Query:   49 LKRRLSPGYLPPPSDPAPLGLEAQSSQIQELLVKALDKRMHEPFLLVGSRGTGKSLCLEHAFARLRERYRVQGKLRPFRVVYVNGRMESTDVGAISEIAAQLEMSKTLDTSKRRSTXXXXXXXXXXXXXARNQLDFVVEGMRSGTFEETPLVFVIDNIEEFA 211
            L+ RL   ++P     AP+G + +  QI +L+ + ++       LL+G+RG GK++ L++A   +++   V   L     VY++G +++ D  A+ EIA QL +  T+      S              A N L F++E ++SG     P++F++D  + FA
Sbjct:   18 LRERLGQCWVP----EAPVGFKEEEQQIADLVKRTINFGESNSVLLIGTRGIGKTMLLKNALKEVKKDKNVHQNLLE---VYLSGLLQTNDKIALKEIARQLHLDNTVGDKVFGS-------------FAEN-LQFLLESLKSGGQHSKPILFILDEFDLFA 158          
BLAST of NO01G05110 vs. NCBI_GenBank
Match: ORX90963.1 (origin recognition complex, subunit 4 [Basidiobolus meristosporus CBS 931.73])

HSP 1 Score: 65.5 bits (158), Expect = 2.600e-7
Identity = 39/144 (27.08%), Postives = 73/144 (50.69%), Query Frame = 0
Query:   67 LGLEAQSSQIQELLVKALDKRMHEPFLLVGSRGTGKSLCLEHAFARLRERYRVQGKLRPFRVVYVNGRMESTDVGAISEIAAQLEMSKTLDTSKRRSTXXXXXXXXXXXXXARNQLDFVVEGMRSGTFEETPLVFVIDNIEEFA 211
            +GLE Q ++I +LL + + +      LL+G RG+GKS+ +      L ++Y V  K + F  V++NG +++ D  A+ EI  QL + +  D++   S                  L F++  ++ G+ +   +VF++D  + FA
Sbjct:   32 VGLEEQEAKIYDLLERTVSQGESNSALLIGQRGSGKSMLVNRVLQNLTQKYHVDNK-KDFYQVHLNGLVQTDDRIALKEIIRQLSLEEEFDSTLSSS--------------FAETLAFLLNLLKQGSKDNVSIVFILDEFDLFA 160          
BLAST of NO01G05110 vs. NCBI_GenBank
Match: CDS05825.1 (hypothetical protein LRAMOSA08353 [Lichtheimia ramosa])

HSP 1 Score: 65.1 bits (157), Expect = 3.400e-7
Identity = 46/173 (26.59%), Postives = 82/173 (47.40%), Query Frame = 0
Query:   38 LQAAIIAARALLKRRLSPGYLPPPSDPAPLGLEAQSSQIQELLVKALDKRMHEPFLLVGSRGTGKSLCLEHAFARLRERYRVQGKLRPFRVVYVNGRMESTDVGAISEIAAQLEMSKTLDTSKRRSTXXXXXXXXXXXXXARNQLDFVVEGMRSGTFEETPLVFVIDNIEEFA 211
            LQ  +  AR+ L  RLS    PP        L+ Q + + +LL + + K      LL+G+RG GK++ +  A   L ++Y    +   F V+ +NG+ E+TD  A+SEIA QL + +     ++                     D+++  +++G     P++F++D  + FA
Sbjct:   71 LQHQVACARSRLLERLSEKSSPPQM----YCLQDQYATLYDLLDQTVSKGESNSCLLIGNRGVGKTMLVRRALEDLDKQYNRTSEASNFCVIRLNGQTETTDRLALSEIARQLFLQQKQPQQQQSRQFASF----------AESFDYLLSLIKAGDKSTLPIIFILDEFDLFA 229          
The following BLAST results are available for this feature:
BLAST of NO01G05110 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 5
Match NameE-valueIdentityDescription
EWM29439.15.500e-5858.18origin recognition complex subunit 4 [Nannochlorop... [more]
XP_014772349.12.600e-727.78PREDICTED: origin recognition complex subunit 4-li... [more]
XP_014772351.12.600e-727.78PREDICTED: origin recognition complex subunit 4-li... [more]
ORX90963.12.600e-727.08origin recognition complex, subunit 4 [Basidiobolu... [more]
CDS05825.13.400e-726.59hypothetical protein LRAMOSA08353 [Lichtheimia ram... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G05110.1NO01G05110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G05110.1NO01G05110.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G05110 ID=NO01G05110|Name=NO01G05110|organism=Nannochloropsis oceanica|type=gene|length=1060bp
ATGGAGCCTCCCGCTGACCTCTCTCCATCGGCTCGGAAGCGACCACGGAC
ATgtacgtcctgctgctgccttctgcctcgtctaccagtctatttcccta
tcatcattccctccctacgtctgtggtcagctcttttaattgtccctaag
atgttttagatgccgaaacccttcgttccctccccccctccctatttccc
tcttgctctccttccctcccatcccactcctgctcctccaacaccccaac
catactctcctccttcctttcttctcttcccaactttctagatgcaaaga
tccaatctgcatgagtgtgcctgacctgattgacacgatgctgacaccct
tcctcccttcttcctctcccccaccccaccattgttaccacctatcgtac
tacgaagCCACTTCCTCATCCTCGTCCAACATTGACACCTTACAAGATAT
CCACGGCATGCCCTCTCTTCAAGCTGCCATAATCGCCGCCCGTGCCCTGC
TCAAACGTCGTCTCTCTCCCGGCTACCTCCCCCCTCCCTCCGACCCCGCC
CCCCTCGGTCTCGAAGCTCAGTCCTCCCAAATCCAAGAGTTATTAGTCAA
AGCCTTGGACAAACGAATGCACGAGCCTTTCTTATTGGTAGGATCGCGGG
GAACGGGGAAGAGTCTGTGTCTGGAGCACGCATTCGCGAGATTGAGAGAG
CGGTATCGCGTGCAGGGGAAACTACGGCCTTTTAGGGTGGTATATGTTAA
TGGTCGAATGGAGAGTACGGATGTGGGGGCAATCAGTGAAATTGCGGCGC
AGCTGGAGATGAGCAAGACGTTGGATACCTCGAAAAGGAGATCGACAGGG
GGCAGCGCGGCAGGAGGGAGGGGGGGAGGGAGGGGGGCGAGGAATCAGCT
GGATTTTGTGGTGGAGGGGATGAGGAGTGGCACGTTTGAGGAGACGCCGT
TGGTGTTTGTTATCGACAATATTGAGGAATTTGCGCGGCGAGGGGGAAGA
GGAGGGGGAGGAGGAGGAGGAGCAGGAGGGGGGGAAAGCAGTTGTTGTTG
TATTCGTTAA
back to top

protein sequence of NO01G05110.1

>NO01G05110.1-protein ID=NO01G05110.1-protein|Name=NO01G05110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=235bp
MEPPADLSPSARKRPRTSTSSSSSNIDTLQDIHGMPSLQAAIIAARALLK
RRLSPGYLPPPSDPAPLGLEAQSSQIQELLVKALDKRMHEPFLLVGSRGT
GKSLCLEHAFARLRERYRVQGKLRPFRVVYVNGRMESTDVGAISEIAAQL
EMSKTLDTSKRRSTGGSAAGGRGGGRGARNQLDFVVEGMRSGTFEETPLV
FVIDNIEEFARRGGRGGGGGGGAGGGESSCCCIR*
back to top
Synonyms
Publications