NO01G05080, NO01G05080 (gene) Nannochloropsis oceanica

Overview
NameNO01G05080
Unique NameNO01G05080
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4184
Alignment locationchr1:1351947..1356130 +

Link to JBrowse

Properties
Property NameValue
DescriptionMynd domain protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1351947..1356130 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002893Znf_MYND
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
Homology
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BLAST of NO01G05080 vs. NCBI_GenBank
Match: EWM29459.1 (mynd domain protein [Nannochloropsis gaditana])

HSP 1 Score: 1201.4 bits (3107), Expect = 0.000e+0
Identity = 707/1079 (65.52%), Postives = 783/1079 (72.57%), Query Frame = 0 
Query:    1 MPHRRLAAAIARMKARGPPALDPMEEDEQEPTPAGMLQDLSLCDPPSDATREDDVVEEENYVKAMLNRSMDIFRRIKASGTTTYREGWTLLEKELVLEMEYTNWAVLSDGTITALCAYLLDLLLCIEKDYV-------EXXXXXXXXXXXXXXXKVPGLG--------KLREGAPPESLDCAFAALDVLEKMMEARFINFEGEDLERPFDRDGSLYIYRALVSALRLIVAVINYEGYDPAPQKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKTFTRPASLSSSALVMHGTHPSLSSPRNALAPKTFTYDDAAGKEHVHTKAKTYEPLQYLLTVFYLLSHTSIQTDATAFWDSPDVVIEELWAPRNLQALLACIGIVLDKLHHSPDARDQALLTILVDRWVHTLHGLICTDSIGRQMSATVPEEDKARDFDNDKPGIECLTGVSTYLGRWMDVRCLPCSCMFCGVQRESMECMMSKWDRRLAHRLIQLGGVAVIGRVTFWLLESFRSIEVSGDCTGEDLYRTDVALATQVVHLSVLSDYQVATLAEAQTLRAQAVKQAIDSGFLNFLLAYFIPRKLCRLEDRQCETAEDQNKARRLARISCKNCIEFLLLSGDGWITDTCYNARGVVKIGRDINGRMAPAAQRLVELWAEDKRVCGTTEELLEHYAPFFLKLSEIIRLSARYGCMKDFWSQDLLDASVN----------------------------------------KALLCAMATFTDMCSPFFGGRDHYSSASRAVHDCEVLKRVLDTAKSSKAATSCIRALSYVSRVELVVSVSTMKNCTNRALHTHDGTTLHHHHLTGQLQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPLRQCGRCKRVFYCSVGCQRANWKEHEKGCVP---FGSQGGGE-----GGRGVKRGEDVIEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTTATRCSQCAVKAQGDRQLMTCGRCREACYCSKECQTKHWVLHRQQCGPDPLTV 1017
            MPHRRLA AIARMKA+GPPALD +EE  ++     +LQDL+L +PPSD  RE++VVEEE YVKAML RS++IF+R+K  G + YREGWTLLEKELVLEMEYTNWAVLSD TI+AL AYLLDLL+ +EK +V       E               +  G G        K R+GAPPE+LDCAFA LDV+EKMMEARF+   G++LERPFD  GSL++Y++LV+ALRL+VAV+ +EGY+PAP                        XXXXXXXXXXXXXXXX          G   +R  SLSSS+L +HGTHPSLSSPRNALAPKTFT+DDAAG+  VHTK+K  EPLQYL+TV YLLSHTS+QTD TAFW++PD ++EE W+ RN QALLACIGIVLDKLHHSPD  DQALLTILVDRWVHTLHGL+CTDSIGRQMSATVPEED ARD++NDKPGIECLTGVSTYLGRWMDVRCLPCSC+FCGVQR SMECM+SKWDRRLAHRLI+L GVAV+GR+ FWLLESFRSIEVSGD TGE+LYRTDVAL TQVVHL+VLSDYQVATLAE  TLRA+AVKQAIDSGFLNFLLAYFIPRKLCRLEDR+CET EDQNKARRLARISCKNCIEFLLLSGDGWITDTCYNARG VKI + IN RMAPAAQRLVELW ED+RVC T EELLEHYAPFFLKLSEIIRLSARYGCMK+ WSQDLLDA VN                                        KALLCAMATFTDMCSPFFGG DHYSSASRAVH C+VLKR+L+ AKS+ A TSCIRALSY+SRVELVV VS+ K C  R      G    H  L                                        RPLRQC RCKRVFYC V CQRANW+EHEK CVP    GS+GG       GG G+  G  V                        XXXXXXXX    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       C+ CA KA  DRQLMTCGRCREA YCSK+CQT+HWV+HR+QCGPDPL V
Sbjct:    1 MPHRRLAQAIARMKAKGPPALDALEEPTED-----LLQDLTLAEPPSDKAREENVVEEEQYVKAMLARSLNIFKRLKDEG-SGYREGWTLLEKELVLEMEYTNWAVLSDRTISALAAYLLDLLVFVEKTFVADGEGGTEALTEGGAERGAAAASQGDGTGQGRPTVPDKCRDGAPPEALDCAFATLDVVEKMMEARFLKCMGDELERPFDPVGSLHLYQSLVTALRLLVAVMQFEGYEPAP------------PVEKEKVKAKEGXXXXXXXXXXXXXXXXRRPPPVPGSHGLALSRSESLSSSSLGLHGTHPSLSSPRNALAPKTFTFDDAAGESQVHTKSKANEPLQYLVTVLYLLSHTSVQTDVTAFWEAPDTIVEEQWSSRNFQALLACIGIVLDKLHHSPDTEDQALLTILVDRWVHTLHGLVCTDSIGRQMSATVPEEDLARDYENDKPGIECLTGVSTYLGRWMDVRCLPCSCVFCGVQRASMECMLSKWDRRLAHRLIELQGVAVLGRLAFWLLESFRSIEVSGDSTGENLYRTDVALVTQVVHLAVLSDYQVATLAEVPTLRARAVKQAIDSGFLNFLLAYFIPRKLCRLEDRRCETTEDQNKARRLARISCKNCIEFLLLSGDGWITDTCYNARGKVKIEKWINKRMAPAAQRLVELWVEDRRVCRTVEELLEHYAPFFLKLSEIIRLSARYGCMKEHWSQDLLDACVNVLSTYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPPKKALLCAMATFTDMCSPFFGGCDHYSSASRAVHGCQVLKRLLEVAKSAHAVTSCIRALSYISRVELVVRVSSTKPCAQRQAGDQSGGVPLHPPL-------------------HATAPAPVMVCHQCHRPPTLDRPLRQCSRCKRVFYCCVECQRANWREHEKACVPPAEPGSEGGASKSGTTGGGGIGMGHMV------------NGVRSDGLVSNGXXXXXXXXGLHPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAHCAAKADSDRQLMTCGRCREAFYCSKDCQTRHWVVHRRQCGPDPLLV 1030
The following BLAST results are available for this feature:
BLAST of NO01G05080 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29459.10.000e+065.52mynd domain protein [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007751NSK007751Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G05080.1NO01G05080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|244569gene_539Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100083g3gene1188Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G05080.1NO01G05080.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G05080 ID=NO01G05080|Name=NO01G05080|organism=Nannochloropsis oceanica|type=gene|length=4184bp
ATGCCTCATCGCAGGCTGGCCGCGGgtgagtagcctgtctcatgcggtgt
cacgcacaggggggcggaggcgcagggtagcatgcctcactcacggatgt
cccgcgtatgattagttatttggggggaagtatgaccatgtacgagagag
ccagggcgtggggcggctaatttgcgccccagtctctgttgtcttgcccg
cccgcgcccgtcgcgtcgttgcataccccaagccacaccggttgtgtgtt
gagcaggccaaccgcagccaccattccgcttaagaatagagggtgaccct
gatgctaagaaaatgtctgtataacgggagcaaaggcgatgccagcgact
tggtcgcagggggctggtgtggtggagggtgtgcgacgactcggcctggg
catgaattgccccgtgcataggccggctggccagcctcttttcttgttct
gaaatcgtttcgactcgtttatcgtgtccatagtactgaaatgcgtattc
gtctgtctcccttcccccctttccttcccgtctacacagCCATCGCGCGA
ATGAAAGCTCGAGGACCCCCGGCCTTGGACCCGATGGAGGAGGATGAGCA
GGAGCCAACGCCGGCGGGAATGCTGCAGGATCTGTCGTTGTGTGACCCTC
CAAGTGACGCCACCCGGGAGGACGATGTGGTTGAGGAGGAGAACTATGTC
AAGgtacgtgtgaagaaggagggacgaatggatggatgaagggagggaga
gtggtcacaattatactgtgattgtttacaggggaggaagaaatggatct
gcaggcaagcgacctagtgacctttgtcattttttgcaagcatgtgacat
aatttaagcaacccacactcccacactcgctcctaccatccctgtcctcc
tttccatccatctgggttgatgtttgctcgcttctcacaactgaccgcct
tttccctccctccatccctccatcccttcaagGCCATGCTAAACCGATCT
ATGGACATTTTTAGACGGATCAAGGCCAGTGGCACCACCACCTACAGGGA
GGGCTGGACGCTCCTCGAGAAGGAACTAGTGCTTGAGATGGAGTACACCA
ACTGGGCCGTTTTGTCCGATGGAACAATCACGGCGCTGTGTGCGTATTTA
TTGGATCTGCTTTTATGTATCGAAAAGGACTATGTAGAAGAGGAGGCCGG
ACCAGCGGGGGGAGGAGCAGCGGCAGCAGCAGCGAAGGTCCCGGGGCTGG
GGAAGCTCAGGGAGGGAGCGCCGCCTGAGTCGTTGGATTGTGCGTTTGCG
GCGTTGGATGTGCTGGAGAAGATGATGGAGGCGCGATTCATTAATTTCGA
AGGGGAGGATCTAGAGAGGCCTTTTGACAGGGATGGTTCGTTGTACATCT
ACCGGGCACTGGTGTCCGCATTAAGGTTAATAGTGGCGGTGATAAATTAC
GAAGGATATGACCCGGCACCTCAGAAGCTACACAAGGAAGAGAAGGAGAA
AGAAGTGGAGGAGGAAAAAAGTATTAAAAAGAGCAATGGCAGCAGCAGCA
ACGGCAACAGCAACAGCAGGCGGCCACCAACTGTGCCGACCGCCAACGGG
AGTAACGGTAGTAACGGTCTTGGCAAGACGTTCACGCGCCCTGCCTCCCT
TTCCTCCTCCGCCCTGGTCATGCACGGGACACACCCCTCCCTGTCCTCCC
CCCGCAATGCTCTTGCCCCCAAAACCTTTACTTACGACGACGCCGCGGGC
AAGGAGCACGTCCACACCAAAGCCAAGACGTACGAGCCTCTGCAGTACCT
CCTTACGGTCTTCTATCTACTCTCTCACACCTCCATCCAAACGGACGCGA
CCGCCTTTTGGGACTCGCCGGATGTGGTGATTGAGGAACTGTGGGCCCCC
CGCAACCTGCAGGCGCTGCTGGCGTGCATCGGCATTGTGCTCGgtaagtc
tccttccctctctccctccctccctccctccctcacgtttgtgtttggaa
gtgttcctggacctgtggacctgtgggactcacgcgttttttccgtgtcc
ggaccgacgcaaaatccattctcacctccctccctccatcccacccgccc
tcccttcgcccagACAAACTCCACCACTCCCCCGATGCCCGTGACCAGGC
CCTCCTGACCATCCTGGTCGACCGCTGGGTCCACACGTTACACGGCCTTA
TCTGCACGGATAGCATTGGGCGGCAGATGTCCGCAACGGTACCAGAGGAG
GACAAGGCACGGGATTTCGATAATGACAAACCGGGGATAGAATGCTTGAC
GGGCGTGAGCACGTACTTGGGCAGGTGGATGGACGTAAGGTGCCTGCCGT
GTTCGTGCATGTTCTGCGGCGTGCAACGGGAGAGCATGGAGTGCATGATG
AGCAAGTGGGACCGGCGGCTGGCTCATCGATTGATTCAACTGGGGGGCGT
GGCGGTGATTGGACGGGTTACATTTTGGCTGCTTGAGAGCTTCCGGTCGA
TTGAGGTGTCAGGGGACTGCACGGGCGAGGATTTGTACCGAACAGACGTG
GCCTTGGCTACGCAGGTGGTGCACTTAAGCGTGCTGTCCGACTACCAGGT
GGCCACTTTGGCGGAGGCACAGACGTTGAGAGCACAAGCAGTGAAGCAGG
CGATCGATTCGGGATTTTTGAATTTTTTGCTGGCATATTTTATCCCTAGG
AAGCTGTGTCGGTTGGAGGACCGACAATGTGAAACGGCAGAAGATCAGAA
CAAGGCTCGGAGGCTCGCGAGGATTAGCTGCAAGAACTGTATCGAGTTCC
TGTTGCTATCGGGGGATGGGTGGATAACGGACACCTGCTACAACGCCCGC
GGGGTGGTTAAAATCGGGCGCGACATTAACGGTCGCATGGCGCCGGCGGC
ACAACGACTGGTAGAACTGTGGGCGGAGGACAAGAGAGTGTGTGGAACGA
CGGAGGAGCTGCTCGAGCACTATGCGCCATTCTTCCTCAAGCTCTCGGAG
ATTATTCGGCTGTCGGCCCGGTACGGCTGCATGAAGGACTTTTGGTCACA
AGACCTCCTCGATGCCTCCGTCAACgtcttggcgacttacacccaccttt
ccatctcccactacgcctcctccccgtcctccccttcctcgtgcgacacc
tcctcctttctctccccccctcctccccctcctccaccgtcaccctctcc
ctccccccgaagAAGGCACTCCTGTGCGCCATGGCCACGTTCACTGACAT
GTGCTCTCCTTTCTTCGGCGGACGCGACCACTACTCCTCTGCCTCTCGGG
CAGTCCACGACTGCGAGGTCCTTAAACGTGTTCTCGACACTGCCAAGTCG
TCTAAAGCCGCCACCAGCTGTATCCGGGCATTGTCCTACGTCTCGCGGGT
GGAGCTCGTTGTCAGCGTGTCGACCATGAAAAATTGCACCAACCGCGCCC
TCCACACCCACGACGGCACCACCCTCCACCACCACCACCTCACCGGGCAG
CTCCAGCAGTGCCAGTTCCAAATGCTGCAGCAGCAGCAGCAGCGGCAGCA
GTCACAGCAGCAGATGCTGACTAGGGGGTGTCACCAGTGCCACCAACTCC
CCACCTTGCACCGGCCCCTCCGGCAATGCGGGCGGTGCAAGCGGGTATTT
TATTGTAGTGTGGGGTGCCAACGGGCTAATTGGAAGGAACACGAGAAGGG
CTGTGTACCCTTTGGGAGCCAGGGAGGGGGAGAGGGAGGGAGGGGGGTCA
AGAGGGGGGAAGATGTGATAGAGAGGGGAGGAGGAGAGGGAGGAGGTGGT
GCAGGAGCAACTGCACATGAAGGAGGGAGTGGAGGGAGCAGTGCGACTGA
TACAGCGGGGATGATGGCTGGCAGAGGAGGAGGAGAGGGAGGAGGAGGAG
AGGGAGGGGGAGGAAGAGCGACGGGAGGAGGAACAGGAGAGCAGGCGGGG
ACAGGAACAAAAGCACTCGCAGGAGTAGGAGCAGGGACGACTGCGACGCG
TTGCTCGCAGTGTGCGGTCAAGGCGCAGGGAGACCGGCAATTGATGACGT
GTGGTCGTTGTCGGGAGGCGTGTTACTGCTCGAAGGAATGTCAGACGAAG
CATTGGGTGCTTCACAGACAGCAGTGCGGTCCGGATCCTTTGACAGTGGC
GGTGGAGAGCGGGGGAGAGGAGAGAGGGCGTTAG
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protein sequence of NO01G05080.1

>NO01G05080.1-protein ID=NO01G05080.1-protein|Name=NO01G05080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1028bp
MPHRRLAAAIARMKARGPPALDPMEEDEQEPTPAGMLQDLSLCDPPSDAT
REDDVVEEENYVKAMLNRSMDIFRRIKASGTTTYREGWTLLEKELVLEME
YTNWAVLSDGTITALCAYLLDLLLCIEKDYVEEEAGPAGGGAAAAAAKVP
GLGKLREGAPPESLDCAFAALDVLEKMMEARFINFEGEDLERPFDRDGSL
YIYRALVSALRLIVAVINYEGYDPAPQKLHKEEKEKEVEEEKSIKKSNGS
SSNGNSNSRRPPTVPTANGSNGSNGLGKTFTRPASLSSSALVMHGTHPSL
SSPRNALAPKTFTYDDAAGKEHVHTKAKTYEPLQYLLTVFYLLSHTSIQT
DATAFWDSPDVVIEELWAPRNLQALLACIGIVLDKLHHSPDARDQALLTI
LVDRWVHTLHGLICTDSIGRQMSATVPEEDKARDFDNDKPGIECLTGVST
YLGRWMDVRCLPCSCMFCGVQRESMECMMSKWDRRLAHRLIQLGGVAVIG
RVTFWLLESFRSIEVSGDCTGEDLYRTDVALATQVVHLSVLSDYQVATLA
EAQTLRAQAVKQAIDSGFLNFLLAYFIPRKLCRLEDRQCETAEDQNKARR
LARISCKNCIEFLLLSGDGWITDTCYNARGVVKIGRDINGRMAPAAQRLV
ELWAEDKRVCGTTEELLEHYAPFFLKLSEIIRLSARYGCMKDFWSQDLLD
ASVNKALLCAMATFTDMCSPFFGGRDHYSSASRAVHDCEVLKRVLDTAKS
SKAATSCIRALSYVSRVELVVSVSTMKNCTNRALHTHDGTTLHHHHLTGQ
LQQCQFQMLQQQQQRQQSQQQMLTRGCHQCHQLPTLHRPLRQCGRCKRVF
YCSVGCQRANWKEHEKGCVPFGSQGGGEGGRGVKRGEDVIERGGGEGGGG
AGATAHEGGSGGSSATDTAGMMAGRGGGEGGGGEGGGGRATGGGTGEQAG
TGTKALAGVGAGTTATRCSQCAVKAQGDRQLMTCGRCREACYCSKECQTK
HWVLHRQQCGPDPLTVAVESGGEERGR*
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Synonyms
Publications