NO01G05030, NO01G05030 (gene) Nannochloropsis oceanica

Overview
NameNO01G05030
Unique NameNO01G05030
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1992
Alignment locationchr1:1336418..1338409 +

Link to JBrowse

Properties
Property NameValue
DescriptionCell division topological specificity factor
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1336418..1338409 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0051301cell division
GO:0032955regulation of division septum assembly
GO:0016043cellular component organization
GO:0007049cell cycle
Vocabulary: INTERPRO
TermDefinition
IPR036707MinE_sf
IPR005527MinE
Homology
[Close]
BLAST of NO01G05030 vs. NCBI_GenBank
Match: EWM29430.1 (cell division topological specificity factor [Nannochloropsis gaditana])

HSP 1 Score: 172.2 bits (435), Expect = 1.000e-39
Identity = 87/107 (81.31%), Postives = 101/107 (94.39%), Query Frame = 0 
Query:   15 TEEDLFTMRDLALRFARAFEGFGLSTSMTSPRNMAKERLSIILAHQRLADVDIQQLQADVLACVQKYVKITPEQAVSIKVKQDGGVDVFEMQIALAGAASNMTAAKR 122
            ++E +  MRDLALRFARAFEGFGLSTS+ SPRN+AKERLSIILAHQRL+DV+IQQLQADVLACVQKYVK+ PE+AVSIKVKQDGG+DVFEMQIALAGAA+N++A K+
Sbjct:    8 SKEQIEAMRDLALRFARAFEGFGLSTSLQSPRNVAKERLSIILAHQRLSDVNIQQLQADVLACVQKYVKVRPEEAVSIKVKQDGGIDVFEMQIALAGAAANLSAGKQ 114
[Close]
BLAST of NO01G05030 vs. NCBI_GenBank
Match: CBJ28079.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 81.3 bits (199), Expect = 2.300e-12
Identity = 44/82 (53.66%), Postives = 60/82 (73.17%), Query Frame = 0 
Query:   37 GLSTSMTSPRNMAKERLSIILAHQR----LADVDIQQLQADVLACVQKYVKITPEQAVSIKVKQDGGVDVFEMQIALAGAAS 115
            G+ST+ TS R +A+ERLSIILAHQR    L  +D++ LQA+V  CV+KY+ +   + + + VKQDG VDVFEMQ+ LAG +S
Sbjct:   62 GVSTNATS-RGVARERLSIILAHQRGDVLLEGIDLKALQAEVYECVKKYISVDASKPIQLSVKQDGAVDVFEMQVHLAGESS 142
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BLAST of NO01G05030 vs. NCBI_GenBank
Match: CCA22113.1 (conserved hypothetical protein [Albugo laibachii Nc14] >CCA23395.1 conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 73.9 bits (180), Expect = 3.800e-10
Identity = 40/83 (48.19%), Postives = 55/83 (66.27%), Query Frame = 0 
Query:   38 LSTSMTSPRNMAKERLSIILAHQR----LADVDIQQLQADVLACVQKYVKITPEQAVSIKVKQDGGVDVFEMQIALAGAASNM 117
            LS+S     ++AKERL IILAHQR    LA VD+  LQ D+L CVQ+Y+ +T +  ++I VKQ+G  D+FEMQ+ + G    M
Sbjct:   54 LSSSKPMSASIAKERLQIILAHQRGSQILAGVDLAALQKDLLECVQRYIGVTHDANINIAVKQEGSFDIFEMQVPVDGKQRKM 136
[Close]
BLAST of NO01G05030 vs. NCBI_GenBank
Match: OQS00572.1 (hypothetical protein ACHHYP_03420 [Achlya hypogyna])

HSP 1 Score: 72.4 bits (176), Expect = 1.100e-9
Identity = 37/80 (46.25%), Postives = 57/80 (71.25%), Query Frame = 0 
Query:   37 GLSTSMTSPRNMAKERLSIILAHQR----LADVDIQQLQADVLACVQKYVKITPEQAVSIKVKQDGGVDVFEMQIALAGA 113
            G + + +S + +AKERL IILAHQR    LA VD+  LQ ++LACVQ+++ +   + V+I VKQ+G +D+FEMQ+ ++ A
Sbjct:   12 GATVAPSSTKTIAKERLQIILAHQRGSQALAGVDLGALQEELLACVQRHIAVAQGEKVNIAVKQEGSMDIFEMQVPVSAA 91
[Close]
BLAST of NO01G05030 vs. NCBI_GenBank
Match: XP_008607757.1 (cell division topological specificity factor MinE [Saprolegnia diclina VS20] >EQC38933.1 cell division topological specificity factor MinE [Saprolegnia diclina VS20])

HSP 1 Score: 70.1 bits (170), Expect = 5.400e-9
Identity = 36/75 (48.00%), Postives = 54/75 (72.00%), Query Frame = 0 
Query:   40 TSMTSPRNMAKERLSIILAHQR----LADVDIQQLQADVLACVQKYVKITPEQAVSIKVKQDGGVDVFEMQIALA 111
            +S  S + +AKERL IILAHQR    LA VD+  LQ ++LACVQ+++ +   + V+I VKQ+G +D+FEMQ+ ++
Sbjct:   18 SSAASTKTIAKERLQIILAHQRGSQALAGVDLGALQEELLACVQRHIAVAQGEKVNIAVKQEGSMDIFEMQVPVS 92
[Close]
BLAST of NO01G05030 vs. NCBI_GenBank
Match: XP_009834467.1 (cell division topological specificity factor MinE [Aphanomyces astaci] >ETV76342.1 cell division topological specificity factor MinE [Aphanomyces astaci])

HSP 1 Score: 70.1 bits (170), Expect = 5.400e-9
Identity = 36/87 (41.38%), Postives = 59/87 (67.82%), Query Frame = 0 
Query:   39 STSMTSPRNMAKERLSIILAHQR----LADVDIQQLQADVLACVQKYVKITPEQAVSIKVKQDGGVDVFEMQIALAGAASNMTAAKR 122
            S+  ++ +N+AKERL IILAHQR    L+ V++  LQA++LACVQ+++ +   + V+I VK +G +D+FEMQ+ +   A+    + R
Sbjct:   21 SSGASASKNIAKERLQIILAHQRGSVALSGVNLNALQAELLACVQRHIAVADGEKVNIAVKHEGNLDIFEMQVPVQPLAAAAATSPR 107
[Close]
BLAST of NO01G05030 vs. NCBI_GenBank
Match: XP_008878525.1 (cell division topological specificity factor MinE [Aphanomyces invadans] >ETV92755.1 cell division topological specificity factor MinE [Aphanomyces invadans])

HSP 1 Score: 70.1 bits (170), Expect = 5.400e-9
Identity = 34/72 (47.22%), Postives = 54/72 (75.00%), Query Frame = 0 
Query:   40 TSMTSPRNMAKERLSIILAHQR----LADVDIQQLQADVLACVQKYVKITPEQAVSIKVKQDGGVDVFEMQI 108
            ++ ++ +N+AKERL IILAHQR    L+ VD+  LQA++LACVQ+++ +   + V+I VK +G +D+FEMQ+
Sbjct:   23 STASASKNIAKERLQIILAHQRGSQALSGVDLNALQAELLACVQRHIAVADGERVNIAVKHEGSLDIFEMQV 94
[Close]
BLAST of NO01G05030 vs. NCBI_GenBank
Match: XP_012203520.1 (hypothetical protein SPRG_09009 [Saprolegnia parasitica CBS 223.65] >KDO25710.1 hypothetical protein SPRG_09009 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 70.1 bits (170), Expect = 5.400e-9
Identity = 36/75 (48.00%), Postives = 54/75 (72.00%), Query Frame = 0 
Query:   40 TSMTSPRNMAKERLSIILAHQR----LADVDIQQLQADVLACVQKYVKITPEQAVSIKVKQDGGVDVFEMQIALA 111
            +S  S + +AKERL IILAHQR    LA VD+  LQ ++LACVQ+++ +   + V+I VKQ+G +D+FEMQ+ ++
Sbjct:   18 SSAASTKTIAKERLQIILAHQRGSQALAGVDLGALQEELLACVQRHIAVAQGEKVNIAVKQEGSMDIFEMQVPVS 92
[Close]
BLAST of NO01G05030 vs. NCBI_GenBank
Match: OQS05154.1 (hypothetical protein THRCLA_20704 [Thraustotheca clavata])

HSP 1 Score: 69.7 bits (169), Expect = 7.100e-9
Identity = 35/68 (51.47%), Postives = 51/68 (75.00%), Query Frame = 0 
Query:   44 SPRNMAKERLSIILAHQR----LADVDIQQLQADVLACVQKYVKITPEQAVSIKVKQDGGVDVFEMQI 108
            S + +AKERL IILAHQR    LA VD+ +LQ ++LACVQ+++ +   + V+I VKQ+G +D+FEMQ+
Sbjct:   18 SAKTIAKERLQIILAHQRGSQALAGVDLAKLQEELLACVQRHIAVAKGEKVNIAVKQEGSMDIFEMQV 85
[Close]
BLAST of NO01G05030 vs. NCBI_GenBank
Match: XP_008913598.1 (cell division topological specificity factor MinE [Phytophthora parasitica INRA-310] >ETK74105.1 cell division topological specificity factor MinE [Phytophthora parasitica] >ETL27530.1 cell division topological specificity factor MinE [Phytophthora parasitica] >ETN01043.1 cell division topological specificity factor MinE [Phytophthora parasitica INRA-310] >ETO62536.1 cell division topological specificity factor MinE [Phytophthora parasitica P1976] >ETP03610.1 cell division topological specificity factor MinE [Phytophthora parasitica CJ01A1] >ETP31774.1 cell division topological specificity factor MinE [Phytophthora parasitica P10297] >KUG00764.1 Cell division topological specificity factor [Phytophthora nicotianae])

HSP 1 Score: 69.3 bits (168), Expect = 9.200e-9
Identity = 36/80 (45.00%), Postives = 55/80 (68.75%), Query Frame = 0 
Query:   36 FGLSTSMTSPRNMAKERLSIILAHQR----LADVDIQQLQADVLACVQKYVKITPEQAVSIKVKQDGGVDVFEMQIALAG 112
            FG +   +S +++AKERL IILAHQR    LA VD+  LQ ++L CVQ+++K+     ++I VK +G +D+FEMQ+ + G
Sbjct:   21 FGEAEQASSSKSVAKERLQIILAHQRGSQVLAGVDLAALQKELLECVQRHIKVANGANINIAVKNEGHLDIFEMQVPVDG 100
The following BLAST results are available for this feature:
BLAST of NO01G05030 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 18
Match NameE-valueIdentityDescription
EWM29430.11.000e-3981.31cell division topological specificity factor [Nann... [more]
CBJ28079.12.300e-1253.66conserved unknown protein [Ectocarpus siliculosus][more]
CCA22113.13.800e-1048.19conserved hypothetical protein [Albugo laibachii N... [more]
OQS00572.11.100e-946.25hypothetical protein ACHHYP_03420 [Achlya hypogyna... [more]
XP_008607757.15.400e-948.00cell division topological specificity factor MinE ... [more]
XP_009834467.15.400e-941.38cell division topological specificity factor MinE ... [more]
XP_008878525.15.400e-947.22cell division topological specificity factor MinE ... [more]
XP_012203520.15.400e-948.00hypothetical protein SPRG_09009 [Saprolegnia paras... [more]
OQS05154.17.100e-951.47hypothetical protein THRCLA_20704 [Thraustotheca c... [more]
XP_008913598.19.200e-945.00cell division topological specificity factor MinE ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007757NSK007757Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G05030.1NO01G05030.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577611gene_532Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100305g2gene1195Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G05030.1NO01G05030.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G05030 ID=NO01G05030|Name=NO01G05030|organism=Nannochloropsis oceanica|type=gene|length=1992bp
GCGCAGCATGCTGCTCTTTTCTGTGGTGAGTCAGGGGAGGGAGTATTGTC
GTGTGAATGTTGTGCTTGAGTTGAGGGCCCAAACTACCGCAACCAGGAGC
GAGGGTGCCGCGGCCTCGATTACGCAGAGGCATGAGATGCTAAGGCATCC
ACGAGAGAATGCCATCCGCCGCTTCATCGTTGTACTTGCAGTGGAAATGC
TGGTATTTGTATCTCGCGTTATGATGCGAGTGGGTGCATGAGTCTAAAGG
AACATGCAAGAAGAACTGACGTGGGAGTTGAGGAAGCAAGGACGTTAAGA
GAAGGAGGAGGCTTGCCCAGAAACTGATGATGACGATGATGGCATTGCCT
CACAATGGCATGAAAATGCCGTGTGTCCTCGCAGGCAGGCATTACATCTT
AGCCTCGCCGCACGATAACATGCGTTAAGGCTTCAGAAAAGTCAAAGCGC
ACAGGGGGCGGGGCGGTCATTCAAAGGCGGCTGGGTCATCGCCAACTCTT
GCTTCGCGCAGCGAAGCATGAGCATTCTCTATCTGGTCTCACACGACGAA
CTACACCTTACAGAAGAGGACCTATTCACCATGAGAGACTTGGCCCTGCG
GTTTGCCCGGGCCTTCGAGGGCTTTGGCTTGTCCACTAGCATGACCTCGC
CGCGgtaagtggaagaagcaagagaatagagaggacaggaggagagggaa
agagaaatgaggcggccatgccagtccgagcatcgcatcctcgcatatgc
accctctaaacccactcaaccacacagCAACATGGCCAAGGAGCGCCTGT
CTATCATTCTTGCCCATCAACGTCTGGCAGACGTAGATATTCAGCAGCTT
CAGgtacgtgcaggctgccgcatcaacgttatcgtcataaggtgtcgcag
gatggtaatagctgcattcacatgtcatctcacaaaaaaaacagGCTGAT
GTCCTAGCGTGCGTACAGAAATATGTCAAGATCACACCTGAGCAAGCTGT
CTCCATAAAAGgtgcgtgtgtgtgtgagcggaaggaggcactttgtggga
gagcccagcgacgagagttgaactgagggagcagcgttttcgtgcaggcg
taccatccagacctgctttctcttgcgaatttgctttttcgtgttgcttt
gctgtatgtcggtcatgcctatttgacggcatcgtcgtgtaatggacttt
ctagctgcacctccctgttttccctcgtccaccctactagcagtacccac
tcatctctcatctcttatctctcatctctaattctacccgcctccccacc
cccaaacccacccacagTGAAGCAAGACGGGGGTGTCGATGTGTTCGAGA
TGCAGATTGCCTTGGCAGGGGCCGCTAGCAACATGACGGCTGCCAAGCGG
TAAAAAGAAAAGTCCGTTGTATGCCGACATGTATGTGTATGAGGGAGAGA
AAAAGAAAAGGACGGACAGTAGGGAGATGTGGTAGAGGGAGGGGAGATGT
AGGAAAGAGGTAATTTTTTCGTCGATCGACCCAATAGCAGGACATCCTGT
AGCCGTGCTCCGATGTATCGAGTGTGCTGTATGCTTTTGGAAGCCGCTAC
TGTTCGAGCGCCAAGAGTAGAAGGCCATACCGAGGAGGGCAACAATGCGG
GGAGAGGTAGGAAAATCAAAAAAGTGGGAGGGATGACTCACGTAGGGGGT
ATGCATATCGATTTTGTGTCTCATCAACCCTACCGTCCGGAGGTTCCGGG
AGGAATGGGACCCACAACTACCCAAAGATTTGGGTTGTCTGTTGGAGAGG
AAAATTGGGCTCTCAGCGCGTGGAATGAGTTTTACAAGTAATCTTGGCGT
GTGTGGAATCGATTACTTCGATATTTGAAATCGTTTGCCCACTTAAAACG
AATAGATCCAGGGAGATGAGCGAGAGACGGGGAACATAAGCGCTGGGGCA
GGTCTGCTACATAACAAAAACAAACGATGAAGGCGCAAGCCA
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protein sequence of NO01G05030.1

>NO01G05030.1-protein ID=NO01G05030.1-protein|Name=NO01G05030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=122bp
MSILYLVSHDELHLTEEDLFTMRDLALRFARAFEGFGLSTSMTSPRNMAK
ERLSIILAHQRLADVDIQQLQADVLACVQKYVKITPEQAVSIKVKQDGGV
DVFEMQIALAGAASNMTAAKR*
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Synonyms
Publications