NO01G05020, NO01G05020 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO01G05020 vs. NCBI_GenBank
Match: EWM29428.1 (succinate dehydrogenase iron sulfur protein [Nannochloropsis gaditana]) HSP 1 Score: 553.1 bits (1424), Expect = 4.900e-154 Identity = 261/282 (92.55%), Postives = 268/282 (95.04%), Query Frame = 0 Query: 1 MLRLHQQAGRRLVAAATGSTATRAVSSSAATPAPQQDLKLKASPKGNIKFFKVYRWDPEQNQKPYLSTYPVDLDDCGPMVLDALFKIKNEQDPSLTFRRSCREGICGSCAMNIDGTNTLACLSYINKGPEPCKIYPLPHMYVLKDLVPDMTNFYAQYKSIEPWLKVKAPESKDPNKEHLQSKEDRKKLDGMYECILCACCSTACPSYWWAADKYLGPAVLMQAYRWIEDSRDEFTRERLEALDDSFKLYRCHTIMNCTKVCPKHLNPGRAIAHIKKRLAAVH 283 MLRL Q AGRR+ AA GS A RAVSSSA TPAPQQDLKLK+S KGNIKFFKVYRWDPEQNQKPYLSTYPVDLDDCGPMVLDALFKIKNEQDP+LTFRRSCREGICGSCAMNIDGTNTLACLSYINKGPEP KIYPLPHMYVLKDLVPDMTNFY QYKSIEPWL+ KA E+KDPNKEHLQSKEDRKKLDGMYECILCACCSTACPSYWWAADKYLGPAVLMQAYRWIEDSRDE+T+ERLEALDDSFKLYRCHTIMNCTKVCPKHLNPGRAIAHIKKRLAA H Sbjct: 1 MLRLQQHAGRRIAAAVVGSPAFRAVSSSATTPAPQQDLKLKSSAKGNIKFFKVYRWDPEQNQKPYLSTYPVDLDDCGPMVLDALFKIKNEQDPTLTFRRSCREGICGSCAMNIDGTNTLACLSYINKGPEPTKIYPLPHMYVLKDLVPDMTNFYDQYKSIEPWLQTKAVEAKDPNKEHLQSKEDRKKLDGMYECILCACCSTACPSYWWAADKYLGPAVLMQAYRWIEDSRDEYTKERLEALDDSFKLYRCHTIMNCTKVCPKHLNPGRAIAHIKKRLAATH 282
BLAST of NO01G05020 vs. NCBI_GenBank
Match: XP_008870586.1 (succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [Aphanomyces invadans] >ETW00451.1 succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [Aphanomyces invadans]) HSP 1 Score: 415.6 bits (1067), Expect = 1.200e-112 Identity = 196/268 (73.13%), Postives = 222/268 (82.84%), Query Frame = 0 Query: 20 TATRAVSSSA-----ATPAPQQDLKLKASPKGNIKFFKVYRWDPEQNQKPYLSTYPVDLDDCGPMVLDALFKIKNEQDPSLTFRRSCREGICGSCAMNIDGTNTLACLSYINKGPEPCKIYPLPHMYVLKDLVPDMTNFYAQYKSIEPWLKVKAPESKDPNKEHLQSKEDRKKLDGMYECILCACCSTACPSYWWAADKYLGPAVLMQAYRWIEDSRDEFTRERLEALDDSFKLYRCHTIMNCTKVCPKHLNPGRAIAHIKKRLAAVH 283 TA RAV ++A A DLKL+AS N+K+FK+YRWDPE KPYL TYPVDL++CGPMVLDAL KIKNEQDP+LTFRRSCREGICGSCAMNIDG NTLACLS I+K + KIYPLPHMYV++DLVPDM NFYAQYKSI+PWL ++ K N E+LQSKEDRKKLDGMYECILCACCST+CPSYWW DKYLGPAVLMQA+RWIEDSRD T ERLE+L+D++KLYRCHTIMNCTK CPKHLNP +AI IKK+LA +H Sbjct: 5 TAARAVRAAAPSGLRALSTAPSDLKLQASTTKNVKYFKIYRWDPESKDKPYLCTYPVDLNECGPMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNIDGGNTLACLSPIDKKKDTTKIYPLPHMYVIRDLVPDMNNFYAQYKSIKPWL--QSDVVKSDNAEYLQSKEDRKKLDGMYECILCACCSTSCPSYWWNPDKYLGPAVLMQAFRWIEDSRDTKTLERLESLNDAYKLYRCHTIMNCTKTCPKHLNPAKAIGKIKKKLAVLH 270
BLAST of NO01G05020 vs. NCBI_GenBank
Match: GAX17289.1 (succinate dehydrogenase (ubiquinone) iron-sulfur subunit [Fistulifera solaris]) HSP 1 Score: 415.6 bits (1067), Expect = 1.200e-112 Identity = 198/245 (80.82%), Postives = 212/245 (86.53%), Query Frame = 0 Query: 37 DLKLKASPKG-NIKFFKVYRWDPEQNQKPYLSTYPVDLDDCGPMVLDALFKIKNEQDPSLTFRRSCREGICGSCAMNIDGTNTLACLSYINKG-PEPCKIYPLPHMYVLKDLVPDMTNFYAQYKSIEPWLKVKAPESKDPNKEHLQSKEDRKKLDGMYECILCACCSTACPSYWWAADKYLGPAVLMQAYRWIEDSRDEFTRERLEALDDSFKLYRCHTIMNCTKVCPKHLNPGRAIAHIKKRLA 280 +LK SPK NIK+FKVYRWDPEQ+QKPYLSTYPVDL+DCGPMVLDAL KIKNEQDPSLTFRRSCREGICGSCAMNIDG N LACLSYI K + KIYPLPHMYV+KDLVPDM NFY QY+SIEPWL+ E K E+LQS++DR KLDGMYECILCACCSTACPSYWW ADKYLGPAVLMQAYRWIEDSRD T +RL LDD+FKLYRCHTIMNCTKVCPKHLNPG+AIA IKKRLA Sbjct: 26 ELKKTISPKSENIKYFKVYRWDPEQSQKPYLSTYPVDLNDCGPMVLDALIKIKNEQDPSLTFRRSCREGICGSCAMNIDGVNNLACLSYIEKDTSKATKIYPLPHMYVIKDLVPDMGNFYEQYRSIEPWLQ-PGQEKKPGQGEYLQSEQDRAKLDGMYECILCACCSTACPSYWWNADKYLGPAVLMQAYRWIEDSRDGSTAKRLADLDDAFKLYRCHTIMNCTKVCPKHLNPGKAIASIKKRLA 269
BLAST of NO01G05020 vs. NCBI_GenBank
Match: GAX18642.1 (succinate dehydrogenase (ubiquinone) iron-sulfur subunit [Fistulifera solaris]) HSP 1 Score: 415.2 bits (1066), Expect = 1.600e-112 Identity = 197/245 (80.41%), Postives = 213/245 (86.94%), Query Frame = 0 Query: 37 DLKLKASPKG-NIKFFKVYRWDPEQNQKPYLSTYPVDLDDCGPMVLDALFKIKNEQDPSLTFRRSCREGICGSCAMNIDGTNTLACLSYINKG-PEPCKIYPLPHMYVLKDLVPDMTNFYAQYKSIEPWLKVKAPESKDPNKEHLQSKEDRKKLDGMYECILCACCSTACPSYWWAADKYLGPAVLMQAYRWIEDSRDEFTRERLEALDDSFKLYRCHTIMNCTKVCPKHLNPGRAIAHIKKRLA 280 +LK SPK NIK+FKVYRWDPEQ+QKPYLSTYPVDL++CGPMVLDAL KIKNEQDPSLTFRRSCREGICGSCAMNIDG N LACLSYI K + KIYPLPHMYV+KDLVPDM+NFY QY+SIEPWL+ E K E+LQS++DR KLDGMYECILCACCSTACPSYWW ADKYLGPAVLMQAYRWIEDSRD T +RL LDD+FKLYRCHTIMNCTKVCPKHLNPG+AIA IKKRLA Sbjct: 26 ELKKTISPKSENIKYFKVYRWDPEQSQKPYLSTYPVDLNECGPMVLDALIKIKNEQDPSLTFRRSCREGICGSCAMNIDGVNNLACLSYIEKDTSKATKIYPLPHMYVIKDLVPDMSNFYEQYRSIEPWLQ-PGQEKKPGQGEYLQSEQDRAKLDGMYECILCACCSTACPSYWWNADKYLGPAVLMQAYRWIEDSRDGSTAKRLADLDDAFKLYRCHTIMNCTKVCPKHLNPGKAIASIKKRLA 269
BLAST of NO01G05020 vs. NCBI_GenBank
Match: OQR83267.1 (succinate dehydrogenase iron-sulfur protein, mitochondrial precursor [Achlya hypogyna]) HSP 1 Score: 413.7 bits (1062), Expect = 4.600e-112 Identity = 195/275 (70.91%), Postives = 223/275 (81.09%), Query Frame = 0 Query: 7 QAGRRLVAAATGSTATRAVSSSAATPAPQQDLKLKASPKGNIKFFKVYRWDPEQNQKPYLSTYPVDLDDCGPMVLDALFKIKNEQDPSLTFRRSCREGICGSCAMNIDGTNTLACLSYINKGPEPCKIYPLPHMYVLKDLVPDMTNFYAQYKSIEPWLKVKAPESKDPNKEHLQSKEDRKKLDGMYECILCACCSTACPSYWWAADKYLGPAVLMQAYRWIEDSRDEFTRERLEALDDSFKLYRCHTIMNCTKVCPKHLNPGRAIAHIKKRLAAV 282 Q R L A+ + R+ ++ A DLKL+++ N+K+FK+YRWDPE +KPY+ TYPVDL++CGPMVLDAL KIKNEQDP+LTFRRSCREGICGSCAMNIDG NTLACLS INK + KIYPLPHMYV++DLVPDM NFY QYKSI+PWL ++ KD N E+LQSKEDRKKLDGMYECILCACCST+CPSYWW DKYLGPAVLMQA+RWIEDSRD T+ERL ALDD+FKLYRCHTIMNCTK CPKHLNP +AI IKK LA V Sbjct: 3 QTSRVLTRASLAAAGARSFAAQAG------DLKLQSASTKNVKYFKIYRWDPESKEKPYMCTYPVDLNECGPMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNIDGGNTLACLSPINKKSDTTKIYPLPHMYVIRDLVPDMNNFYEQYKSIQPWL--QSDVVKDDNTEYLQSKEDRKKLDGMYECILCACCSTSCPSYWWNPDKYLGPAVLMQAFRWIEDSRDTKTKERLAALDDTFKLYRCHTIMNCTKTCPKHLNPAKAIGKIKKMLAPV 269
BLAST of NO01G05020 vs. NCBI_GenBank
Match: CBJ32043.1 (SDH2, succinate dehydrogenase subunit 2 [Ectocarpus siliculosus]) HSP 1 Score: 412.9 bits (1060), Expect = 7.900e-112 Identity = 186/236 (78.81%), Postives = 212/236 (89.83%), Query Frame = 0 Query: 47 NIKFFKVYRWDP-EQNQKPYLSTYPVDLDDCGPMVLDALFKIKNEQDPSLTFRRSCREGICGSCAMNIDGTNTLACLSYINKGPEPCKIYPLPHMYVLKDLVPDMTNFYAQYKSIEPWLKVKAPESKDPNKEHLQSKEDRKKLDGMYECILCACCSTACPSYWWAADKYLGPAVLMQAYRWIEDSRDEFTRERLEALDDSFKLYRCHTIMNCTKVCPKHLNPGRAIAHIKKRLAAV 282 ++K FK+YRWDP E++QKPY+ TYP+D DDCGPMVLDAL KIKNEQDP+LTFRRSCREGICGSCAMNI+G NTLACL I + P KIYPLPHM+V KDLVPDMTNFY QYKSIEPWLK K + KDP+ EHLQS +DRKKLDGMYECILCACCST+CPSYWW ADKYLGPAVLMQAYRWI+DSRD++T+ERLE+LDD+FKL+RCHTIMNCTK CPKHLNPG+AIA+IKKR+ A+ Sbjct: 47 SVKTFKIYRWDPNEKDQKPYMKTYPIDRDDCGPMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNINGKNTLACLCAIEEDSAPMKIYPLPHMFVQKDLVPDMTNFYEQYKSIEPWLKTK--KDKDPDVEHLQSIQDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIDDSRDDYTKERLESLDDAFKLFRCHTIMNCTKTCPKHLNPGKAIANIKKRVHAL 280
BLAST of NO01G05020 vs. NCBI_GenBank
Match: XP_002184001.1 (succinate dehydrogenase iron sulfur protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC44670.1 succinate dehydrogenase iron sulfur protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 411.0 bits (1055), Expect = 3.000e-111 Identity = 200/273 (73.26%), Postives = 227/273 (83.15%), Query Frame = 0 Query: 12 LVAAATGSTATRAVSSSAATPAPQQDLKLKASPK--GNIKFFKVYRWDPEQNQKPYLSTYPVDLDDCGPMVLDALFKIKNEQDPSLTFRRSCREGICGSCAMNIDGTNTLACLSYINK--GPEPCKIYPLPHMYVLKDLVPDMTNFYAQYKSIEPWLKVKAPESKDPNK-EHLQSKEDRKKLDGMYECILCACCSTACPSYWWAADKYLGPAVLMQAYRWIEDSRDEFTRERLEALDDSFKLYRCHTIMNCTKVCPKHLNPGRAIAHIKKRLA 280 ++++++ T S AA DLK A PK IK+FKVYRWDPEQ+QKPYLSTYPVDL +CGPMVLDAL KIKNEQDP+LTFRRSCREGICGSCAMNIDG NTLACLSYI++ KIYPLPHMYV+KDLVPDM NFY QY+SIEPWL+ + + K+P + E+LQ++EDR KLDGMYECILCACCSTACPSYWW ADKYLGPAVL+QAYRWIEDSRD T++RLE LDD+FKLYRCHTIMNCTKVCPKHLNPG+AIA IKKRLA Sbjct: 1 MLSSSSTRTTKTLFSRFAARSFATADLKANAIPKQAPRIKYFKVYRWDPEQSQKPYLSTYPVDLANCGPMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNIDGVNTLACLSYIDQKDTSSATKIYPLPHMYVIKDLVPDMGNFYEQYRSIEPWLQPE--KGKEPGQAEYLQTREDRAKLDGMYECILCACCSTACPSYWWNADKYLGPAVLLQAYRWIEDSRDGSTKKRLEELDDAFKLYRCHTIMNCTKVCPKHLNPGKAIAQIKKRLA 271
BLAST of NO01G05020 vs. NCBI_GenBank
Match: GAX93982.1 (elongation factor 2 [Pythium insidiosum]) HSP 1 Score: 411.0 bits (1055), Expect = 3.000e-111 Identity = 197/275 (71.64%), Postives = 220/275 (80.00%), Query Frame = 0 Query: 8 AGRRLVAAATGSTATRAVSSSAATPAPQQDLKLKASPKGNIKFFKVYRWDPEQNQKPYLSTYPVDLDDCGPMVLDALFKIKNEQDPSLTFRRSCREGICGSCAMNIDGTNTLACLSYINKGPEPCKIYPLPHMYVLKDLVPDMTNFYAQYKSIEPWLKVKAPESKDPNKEHLQSKEDRKKLDGMYECILCACCSTACPSYWWAADKYLGPAVLMQAYRWIEDSRDEFTRERLEALDDSFKLYRCHTIMNCTKVCPKHLNPGRAIAHIKKRLAAVH 283 A ++ A +T T T + + A + A DLKLK + N+K+FK+YRWDPE KPY TYPVDLDDCGPMVLDAL KIKNEQDP+LTFRRSCREGICGSCAMNIDG NTLACLS I K + KIYPLP MYV++DLVPDM NFY QY+SI+PWL ++ K N EHLQSKEDRKKLDGMYECILCACCST+CPSYWW DKYLGPAVLMQA+RWIEDSRD T ERL ALDDSFKLY+CHTIMNCTK CPK LNP RAI IKKRLA++H Sbjct: 3193 APEKVAAPSTAKTVT--LGARALSSAAPGDLKLKTNKPKNVKYFKIYRWDPESKGKPYECTYPVDLDDCGPMVLDALLKIKNEQDPTLTFRRSCREGICGSCAMNIDGGNTLACLSPIKKNNDVTKIYPLPXMYVIRDLVPDMNNFYDQYRSIKPWL--QSDVEKPANVEHLQSKEDRKKLDGMYECILCACCSTSCPSYWWNPDKYLGPAVLMQAFRWIEDSRDTKTEERLRALDDSFKLYKCHTIMNCTKTCPKGLNPARAIGKIKKRLASLH 3463
BLAST of NO01G05020 vs. NCBI_GenBank
Match: GAX93983.1 (elongation factor 2 [Pythium insidiosum]) HSP 1 Score: 411.0 bits (1055), Expect = 3.000e-111 Identity = 197/275 (71.64%), Postives = 220/275 (80.00%), Query Frame = 0 Query: 8 AGRRLVAAATGSTATRAVSSSAATPAPQQDLKLKASPKGNIKFFKVYRWDPEQNQKPYLSTYPVDLDDCGPMVLDALFKIKNEQDPSLTFRRSCREGICGSCAMNIDGTNTLACLSYINKGPEPCKIYPLPHMYVLKDLVPDMTNFYAQYKSIEPWLKVKAPESKDPNKEHLQSKEDRKKLDGMYECILCACCSTACPSYWWAADKYLGPAVLMQAYRWIEDSRDEFTRERLEALDDSFKLYRCHTIMNCTKVCPKHLNPGRAIAHIKKRLAAVH 283 A ++ A +T T T + + A + A DLKLK + N+K+FK+YRWDPE KPY TYPVDLDDCGPMVLDAL KIKNEQDP+LTFRRSCREGICGSCAMNIDG NTLACLS I K + KIYPLP MYV++DLVPDM NFY QY+SI+PWL ++ K N EHLQSKEDRKKLDGMYECILCACCST+CPSYWW DKYLGPAVLMQA+RWIEDSRD T ERL ALDDSFKLY+CHTIMNCTK CPK LNP RAI IKKRLA++H Sbjct: 3237 APEKVAAPSTAKTVT--LGARALSSAAPGDLKLKTNKPKNVKYFKIYRWDPESKGKPYECTYPVDLDDCGPMVLDALLKIKNEQDPTLTFRRSCREGICGSCAMNIDGGNTLACLSPIKKNNDVTKIYPLPXMYVIRDLVPDMNNFYDQYRSIKPWL--QSDVEKPANVEHLQSKEDRKKLDGMYECILCACCSTSCPSYWWNPDKYLGPAVLMQAFRWIEDSRDTKTEERLRALDDSFKLYKCHTIMNCTKTCPKGLNPARAIGKIKKRLASLH 3507
BLAST of NO01G05020 vs. NCBI_GenBank
Match: XP_009826543.1 (succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [Aphanomyces astaci] >ETV84851.1 succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [Aphanomyces astaci]) HSP 1 Score: 410.6 bits (1054), Expect = 3.900e-111 Identity = 199/278 (71.58%), Postives = 228/278 (82.01%), Query Frame = 0 Query: 6 QQAGRRLVAAATGSTATRAVSSSAATPAPQQDLKLKASPKG-NIKFFKVYRWDPEQNQKPYLSTYPVDLDDCGPMVLDALFKIKNEQDPSLTFRRSCREGICGSCAMNIDGTNTLACLSYINKGPEPCKIYPLPHMYVLKDLVPDMTNFYAQYKSIEPWLKVKAPESKDPNKEHLQSKEDRKKLDGMYECILCACCSTACPSYWWAADKYLGPAVLMQAYRWIEDSRDEFTRERLEALDDSFKLYRCHTIMNCTKVCPKHLNPGRAIAHIKKRLAAVH 283 Q+ R AAT S + RA+S++A+ DLKL+ S N+K+FK+YRWDPE +KPYL TYPVDL++CGPMVLDAL KIKNEQDP+LTFRRSCREGICGSCAMNIDG NTLACLS I+K + KIYPLPHMYV++DLVPDM NFYAQYKSI+PWL ++ K N E+LQSKEDRKKLDGMYECILCACCST+CPSYWW DKYLGPAVLMQAYRWIEDSRD T ERLE L+D++KLYRCHTIMNCTK CPKHLNP +AI IKK+LA +H Sbjct: 3 QRTAVRAARAATPS-SLRALSTAAS------DLKLQTSTTAKNVKYFKIYRWDPESKEKPYLCTYPVDLNECGPMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNIDGGNTLACLSPIDKKKDTTKIYPLPHMYVIRDLVPDMNNFYAQYKSIKPWL--QSDVVKSDNTEYLQSKEDRKKLDGMYECILCACCSTSCPSYWWNPDKYLGPAVLMQAYRWIEDSRDTKTLERLEDLNDAYKLYRCHTIMNCTKTCPKHLNPAKAIGKIKKKLAVLH 271 The following BLAST results are available for this feature:
BLAST of NO01G05020 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO01G05020 ID=NO01G05020|Name=NO01G05020|organism=Nannochloropsis oceanica|type=gene|length=2794bpback to top protein sequence of NO01G05020.1 >NO01G05020.1-protein ID=NO01G05020.1-protein|Name=NO01G05020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=283bpback to top Synonyms
Publications
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