NO01G04990, NO01G04990 (gene) Nannochloropsis oceanica

Overview
NameNO01G04990
Unique NameNO01G04990
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2401
Alignment locationchr1:1324349..1326749 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1324349..1326749 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO01G04990 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G04990.1NO01G04990.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577589gene_528Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G04990.1NO01G04990.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G04990 ID=NO01G04990|Name=NO01G04990|organism=Nannochloropsis oceanica|type=gene|length=2401bp
ATGCTTCCTAGCACACGTTCTCGCAAGGCCTCCGCCCGTCAGAGAGAGGA
ACTGGAGGCTGCGAGGGAGGAGGAGGAGAAGGGTAATCTTGATCTGACGG
GTCAGACGGGTCCGAGCGGAGGCCTTGTATCAGGACCAGCAGCAGCAGCA
GCAGCAGGCAGCGGTGAAGCTTGTGATGGAGGTCGTAAAGGAGATCGTGG
AGGTGCGCGTGCGGGAGCCTGTGGAGGAGCCAGTGGAGGAGGGGAGGAGG
CGGCGGCTAGCCATAACGTCATTCGGCAGAATATTACCTCATATGAGGAG
ATTTTACCACCTCCCTTCGCCGCTACGCCTGGCCATCCTGCTGTAGCTCT
TGCACCTGGTGCTCCTGGACCTGGTGCTGCCGGTGATCCCAGTGCTCCTG
CTCTAACCGGGAGCCGAGGAGGCGGTGGGGGAGGCCGCGGTGGCCGTGCT
GGACGGCGTGGGTGCCTTACTGGAGGTGTCGCACTAGCAGCGATACGAGC
CCCGCCTCCAGCAGCAGAAGAGGATAAATATGCGGCCTGGGAGAAGAGGA
TGCTGCGGGAGACTGCAGCGGCTGAGAGAAAGAATGTAATTGCGGCCGAG
AACATTGCGGCTGTCCCCGCAGAAATATCAAATTTAGAGGCGGAGATTAG
GGAGTTGAAGGAGATGATGCAGAACCTTGgtaagtcgggggaggattgaa
cgggagggagggagggggggagctgagtccttttctccattggccccatt
gtgctgccgcctcctgctggagatgagaaatgatataaaaattgagatat
ctttcttccctcaacgtcagACAGGCGGCAACCAACAATAGCgtgcgtca
gtacctgcaccctccgccacctaagtcctcctcctcctccgcttctagCC
ACACGCCCCGCACGAAGGCCGTCCTCCAACGCATCCTTGTCCAGAACATG
ATGGCCAGCGACGAGATCGGCTTGTTGATGGGCGCACCTGGCTTTAGGAG
GGTGGGAAGGGAGAACGATGATAGTCAGAAGGATGATGATGATGATGATG
ATGATGATGATGATGATGATGATGATGATGATGAGGAGGAGGAGTTGCGC
AGGCGGCGGCGGACTGGGGGTAGAGGGAAGGAGGAAAAGGAGGACAGTGG
AGAGGAAGACGACGATGACGAGGAGGATGATGAAGAATTAgtaagattgt
ttatgttgtacagaaaatatagaaagcagcgctgggctaagcgcagaagg
gaggaggaggaggaggaggggaattgggggggggatgagggcgaggagga
cgggatgggaggcggtgcttaaggaagcagagggaggaggagaattgtgg
ctgttgatgtcgtgaatgagtatgtgaagggagtcgaggagaagaatagg
cgacagcgtttgcggaagaaggggagggatgaggagaggaagcggcagca
acagcctcgggaggagctgctcttgaagcaagcgcttacactgcttgtac
cgcccggcccgccggagatcacgttgagcactagcgtcacctccgtcact
gacgtctaccgcgagtggttcagtcgttcagccgtcggggacgggaagcc
gctgcagtattatttcctccttgcgcctccaggcgggaagggtccgtcct
cgcactatatccaaaacaggcacattgacaacggatatggcaggacttag
AAATTCTGGGTCCGGCACCGTCGTCCTATCTTTTTGGCCATTGCCTACGA
Ggtaagccacagggggaggttgagacggctgctggtccctccctccctcc
ctccctccctccctccctccctccctcccactctcccactctccctctct
ccctcatatctccctttttccctccctcccccaccaaggagagcgacaac
tgagtagcatggaaatgctccttgaaacgccactagctttgtttttgaga
tgggcaatcactcccccctccctccctccctccctccctccctccctccc
tcccaccttccctccctcattcctccccccagGCGGGCATGCTCGTCAAA
GTGGGCAACACCAATTATCACAACCTGGAAGAAGAGGCCCTCAAGGCGCT
CTTGGCGATGAGGAGTGTGGGCTCTCAGAGGGGCGAGGGTCTTGAACAGG
GTAAGGCAACGGATCCGGACGTCGTCACCATGGCCATAATCGACGCCACC
AGGAGCGTTCAGAACTACGCCACCGTGAAGCTGGGGGGGGCTCCCTTCGA
TAGCTTGGCTGTGTGTACCTACATAAAGTTCGAGATAGGGCACGTCAGGA
AAGAAGGGACTATGGGGAAGGGGGTCTATGGGAGTATTGTGAGCATGTAT
GAGATGATGGTTCCTACCCGTGGGGTAGAGGAGGGAGGCGGGCAGGTGTG
A
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protein sequence of NO01G04990.1

>NO01G04990.1-protein ID=NO01G04990.1-protein|Name=NO01G04990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=471bp
MLPSTRSRKASARQREELEAAREEEEKGNLDLTGQTGPSGGLVSGPAAAA
AAGSGEACDGGRKGDRGGARAGACGGASGGGEEAAASHNVIRQNITSYEE
ILPPPFAATPGHPAVALAPGAPGPGAAGDPSAPALTGSRGGGGGGRGGRA
GRRGCLTGGVALAAIRAPPPAAEEDKYAAWEKRMLRETAAAERKNVIAAE
NIAAVPAEISNLEAEIRELKEMMQNLDRRQPTIAHTPRTKAVLQRILVQN
MMASDEIGLLMGAPGFRRVGRENDDSQKDDDDDDDDDDDDDDDDDEEEEL
RRRRRTGGRGKEEKEDSGEEDDDDEEDDEELKFWVRHRRPIFLAIAYEAG
MLVKVGNTNYHNLEEEALKALLAMRSVGSQRGEGLEQGKATDPDVVTMAI
IDATRSVQNYATVKLGGAPFDSLAVCTYIKFEIGHVRKEGTMGKGVYGSI
VSMYEMMVPTRGVEEGGGQV*
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Synonyms
Publications