NO01G04970, NO01G04970 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO01G04970
Unique Name	NO01G04970
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	3389
Alignment location	chr1:1318358..1321746 +

Link to JBrowse

Properties


Property Name	Value
Description	Unknown protein

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr1	genome	chr1:1318358..1321746 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

Homology

[Close]

BLAST of NO01G04970 vs. NCBI_GenBank
Match: EWM29432.1 (hypothetical protein Naga_100305g8, partial [Nannochloropsis gaditana])

HSP 1 Score: 169.9 bits (429), Expect = 3.800e-38
Identity = 194/472 (41.10%), Postives = 250/472 (52.97%), Query Frame = 0

Query:  450 ASPL-TLVEKVELVQMGLYPYDWSGLASGGTSTYILSSFSSAGDPDALLLDMFNKGAAQDGRLLLPFLPPSLLTSLSPFLPRLPKQLVLPLSHSLKALAVIPSLPSSALRAIDSAHRMNQDAAIRQPSRRLIRSSLAVASSVAAPLLGKGAWDKQLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGFKFRQAP------EKECPPSFSXXXXXSLSSMSAIPFXXXXXXXXXXXXXXXXXXXXXNMLWPLVESLEPTRRTATTVLRRGSCSSSRSSTVVVPSQGWTGDEGGEEGEGGGERVLTMQVSRMARAGVAGTGXXXXXXXXXXXXXXXXEAALRAVAATMT---GVQAL--DDEDVIEACVEDVDEEEGGREGGVGRELPSLLLRVTLRAVDVALLGLEFVTVEGIPRVGRRVEVAVRRVKEGMSGKKGKRGWDLMPVFEKPMGAEIMTIKR 910
            ++PL +L EKV LVQ G+YPYDWSG  SG  ST+IL SFSSAGDPDAL  DM+ K A           P  L              L LPL      LA +P++PS A R +D+A R+N+ AA RQPSR+L   SLA+AS++A PLL +    +Q  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     R+ P      E+E  PS++            I                        +L   VE+          + R  + S                D   EEGE G E V+++     AR G  G G                   +  + AT      V+ L   +E+VIE  VE+V+E     EG   ++  ++L +V LR +DVALLGLE+VTVEG+PRV +R+  A +R+++   G++GK GWDLMP FEKPM A+ M+ +R
Sbjct:   23 STPLFSLAEKVALVQRGIYPYDWSGYLSGTPSTFILPSFSSAGDPDALFQDMYRKTAK----------PKKL--XXXXXXXXXXXALALPLD----LLAALPAIPSQAFRTVDAARRLNKQAASRQPSRQLWAQSLAMASTIARPLLEQPTGSRQRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNADGREGPPAYPKEEEEDEPSWAPRSRTRSQWWDGIRPRRPSDVVASPFSASSSLPSSPPVLDARVEASGTGADVRAQIPRTEATSLGLDPGSFPSLSSLMEDWEEEEGEAGMEEVMSVSRMGRARGGARGGGATVMDGRETAWEGGREGGRVEVLYATELKGGDVRRLGGGEEEVIELRVEEVEE-----EGWEAKDWSTVLGKVGLRMLDVALLGLEYVTVEGLPRVQKRLVTAGKRLQQAAWGERGKPGWDLMPAFEKPMDAKTMSTRR 473

[Close]

BLAST of NO01G04970 vs. NCBI_GenBank
Match: EWM29426.1 (hypothetical protein Naga_100707g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 146.7 bits (369), Expect = 3.400e-31
Identity = 102/219 (46.58%), Postives = 133/219 (60.73%), Query Frame = 0

Query:  168 LAIMMVATVMVFSFQMPASPSCTWPYRSHARARRREAMLERRDWRSGETCRPPIPLPSSLARQQRLWASPLMTEVLTHVQDVEDETEEGEIKEGNDGGDL------QQRFEIRDTGAT------SGGWAEELLGNVGLSGDTLLDSLRRSADKDLSSKTLRAIQNAQEDTRSIVAKVQEELATFGAYAASKAMADSKLLVSVGIVVASELAQALARPLL 375
            L I++  TV+V S    +S     P+ S     RRE +       + E CR     P        LWA+P      +  QDVEDE +  ++ E + GG L      ++   +R TG T      + GW E+ L N+GLSGDTLLD+LRRSAD+D+SS TL+AI  AQE++RS++AK+Q EL +  AYAASKA+ADSKLL+SVGIVVASELAQ LARPLL
Sbjct:   12 LGIIVFMTVLVVSHAFQSSA----PWVSRIGTARREFV-------ASERCRKSPTHPP-------LWAAPATEPAPSVAQDVEDEAKGAQVTESDVGGTLWGVRGREEEGSVRGTGPTPESLEANLGWTEDFLSNIGLSGDTLLDNLRRSADQDVSSNTLKAILAAQEESRSLLAKLQAELLSTSAYAASKALADSKLLISVGIVVASELAQVLARPLL 212

The following BLAST results are available for this feature:

BLAST of NO01G04970 vs. NCBI_GenBank

BLAST of NO01G04970 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2


Match Name	E-value	Identity	Description
EWM29432.1	3.800e-38	41.10	hypothetical protein Naga_100305g8, partial [Nanno...	[more]
EWM29426.1	3.400e-31	46.58	hypothetical protein Naga_100707g1, partial [Nanno...	[more]

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL005	nonsL005	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR047	ncniR047	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR091	ngnoR091	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK007765	NSK007765	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO01G04970.1	NO01G04970.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
Naga_100305g8	gene1201	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO01G04970.1	NO01G04970.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO01G04970 ID=NO01G04970|Name=NO01G04970|organism=Nannochloropsis oceanica|type=gene|length=3389bp
ATGACATCGAAGGGCTCGGCTTTCCTTTACCGTCATTTTTTCTCTCGATT
CATCATCAACACATCCGTCATCGCCCTTTGTGTCTTCCCCGGATTATTCC
GCTTATTTACGCGGCGCGAGTCGGCGCATGAGACACTCAACGATGACAGG
GAGAAGTCGGCGCTTGAGACACTCAACGATGACAGGGAGGTTGCGCAGTC
TTCATCCTCCTCCGTGCCATCCCCTTCTTCTTCCTCCTCCTCCTCTTCCT
CCCCTTCCTCCTTCTCTTCGTCCTCCCTCTCCCCGCCCAACTCATTCCTG
GGGGTGCCATGGACGGAGTTAGTGGGTGGgtaggtgagtgtatgccacaa
gccaagcgcccagtacgacgtatgacctcttcatgcttcagatcaaaatt
tctctattccgtcttggtgatggtttgatcgaaatacacgtaagatggac
ttgtaggaccatcgcggttttcttagtccggaccgtactcccaaaacggt
ctcttcgcgcaacatgcatatgcttattgagccctatccatgcacttgcc
tgcatgtgaccaagaccttttactcgacttattctacattgatataaaca
cagGCACATAGATAATTCTCATGCATTTAAGGTTCCAAGTCTCCGCGTAG
CGAGTGGTAGCCAAGAGCCAGCCAGGCCAGGCAACTGCGCGGCGACGTGG
AGGGAGCAGGAACAAGACCTGAAGGATATGCTCCAGCGACAGCAGCTATG
GGGCGTCCCCTGCCATAAGCTGTGTCTGGCTATTATGATGGTGGCGACAG
TGATGGTGTTTTCCTTTCAAATGCCGGCGTCGCCTTCGTGCACTTGGCCC
TACCGGTCGCATGCCAGAGCACGGAGACGGGAGGCCATGCTGGAGCGAAG
GGATTGGAGAAGTGGAGAGACATGCAGGCCACCAATACCACTACCGTCAT
CATTGGCCAGACAGCAGCGGTTATGGGCCTCTCCGCTTATGACGGAAGTG
CTAACACACGTGCAGGACGTGGAGGACGAGACCGAAGAAGGGGAGATAAA
GGAAGGGAATGACGGGGGGGACTTGCAGCAGAGGTTCGAAATTCGGGACA
CTGGTGCAACAAGCGGCGGCTGGGCTGAGGAGCTCTTGGGAAATGTCGGG
CTCTCTGGTGACACCTTGCTCGATAGCCTAAGACGGAGCGCGGATAAGGA
TTTGTCGAGTAAGACACTTCGGGCGATCCAAAACGCTCAAGAGGACACCC
GTTCAATTGTCGCAAAAGTGCAAGAGGAGCTGGCTACCTTTGGGGCGTAT
GCGGCGTCCAAGGCCATGGCGGACAGCAAACTATTGGTCAGTGTGGGTAT
TGTCGTCGCCTCGGAGCTCGCTCAGGCGTTAGCCCGTCCTCTTCTTCCTG
CCGCACCCTCCTCCTCCTCCTCTTCCACCGCAGCCGTCGCCGCCGCTTCT
CCTTCCTCGACCACATCCGTCACTTCTCCTTCATCTCCCTCGCCATTCTC
TGAACTCACTCAAAATGTGGAATTCGCCCTTGGCCTCAACCTCACCACCA
CCATAACTGCAGCACTCACCACTCCTAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCCTCACAGGCGCCTCCCCCCTTACCCTTGTCGAGAAAGT
CGAGCTGGTCCAGATGGGCCTCTACCCTTACGACTGGTCCGGCCTTGCCT
CAGGTGGTACCTCCACCTACATCCTTTCCTCGTTCTCCTCCGCCGGTGAC
CCTGACGCCCTTCTCCTTGACATGTTCAACAAGGGGGCCGCCCAAGACGG
TCGTCTCCTCCTCCCCTTCCTTCCTCCCTCCCTCCTTACCTCCCTCTCCC
CCTTCCTGCCTCGCCTGCCCAAACAACTGGTCCTCCCCCTCTCTCACTCC
TTGAAGGCCCTGGCCGTCATCCCCTCCCTCCCTTCTTCCGCTTTACGCGC
CATTGATTCTGCGCATCGCATGAATCAAGATGCTGCCATTCGACAACCCT
CTCGTCGACTCATCCGCTCCAGCCTTGCTGTCGCCTCCAGCGTGGCCGCT
CCCCTCCTAGGAAAGGGCGCGTGGGACAAACAGCTACGACAGCAGCAACA
ACACCGGGTGCAGCAGCGCTTGCTTGTACGTGGGGTGGCAAAGACGAAGA
AGCGGAGTAAGGGAGGAGAGAACAAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGGAGGGATGGTGGGAAGGATTCAAATTCAGACAGGCGCCTGAGAAAGA
ATGTCCTCCCTCCTTTTCCCCTCCTTCCTACTCTTCTCTCTCTTCCATGT
CAGCAATTCCCTTCTCTTCTTCTTCGGCGGAAGAGGAGGGGGACGGGGAC
GAGGACGAGGAGCAGCAGCAGGGTAAGAACATGCTATGGCCGCTTGTCGA
GTCGCTGGAGCCGACGAGACGTACAGCAACGACAGTCTTGCGCAGAGGCA
GTTGTAGTAGCAGTAGGAGTAGCACCGTGGTCGTTCCGTCGCAGGGATGG
ACGGGCGACGAAGGGGGTGAGGAAGGAGAGGGGGGAGGGGAGAGGGTGTT
GACGATGCAGGTATCAAGGATGGCGAGGGCAGGCGTGGCAGGAACAGGAG
GAGGAGGACGGGAGAGAGGGAGAGGAGGGAGGAGGAGAGGAAGGAATGAA
GCTGCATTGCGGGCAGTGGCGGCGACCATGACAGGTGTTCAGGCCTTGGA
TGATGAAGACGTGATTGAGGCCTGTGTTGAAGATGTGGATGAGGAGGAGG
GAGGGAGGGAGGGAGGGGTTGGAAGGGAGCTGCCGTCGTTGCTTTTAAGA
GTAACATTGAGGGCGGTGGATGTGGCGTTATTGGGGCTGGAGTTCGTGAC
AGTGGAGGGCATCCCAAGGGTAGGGAGGAGAGTGGAGGTGGCAGTGAGGA
GGGTCAAGGAGGGGATGAGTGGGAAAAAAGGCAAAAGGGGATGGGACCTG
ATGCCGGTGTTCGAGAAGCCGATGGGGGCGGAGATCATGACTATCAAGAG
GCGGTGAGGAGCCCTCTCCCCCCTTCCTCCCAACGAAGTTTTGTGAATGT
TTTTTTGATAGATGATTATGTTTTAGTGTTTTATAGATTGTTCAAGTATT
GCGCGTGGGCCAGGGTGCAGATGAGGGTGGGAGGGAAGGGGGGGTGGGTA
GAGGGGCAGTATAACCACACAGAGACAAAGCGGAGGAATAGAGGAAAGGA
CTAAAAGCGTTGAAGAGCGGGTGGAATGGCATTTAAGAGAGAATGGAGTG
GCGTTTGAGTGCGGCTTGAAGAGGGAGTATCAGACGGGCAACTCATCAGG
CAGGCGAGTAAGTAGGTCCGGGAGGGGTATGGAGACAGGCTTCTTGAGTA
ATAGAAAACAAGAGTAAAAACTGACCAAAAGAACAAGAA

protein sequence of NO01G04970.1

>NO01G04970.1-protein ID=NO01G04970.1-protein|Name=NO01G04970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=911bp
MTSKGSAFLYRHFFSRFIINTSVIALCVFPGLFRLFTRRESAHETLNDDR
EKSALETLNDDREVAQSSSSSVPSPSSSSSSSSSPSSFSSSSLSPPNSFL
GVPWTELVGGHIDNSHAFKVPSLRVASGSQEPARPGNCAATWREQEQDLK
DMLQRQQLWGVPCHKLCLAIMMVATVMVFSFQMPASPSCTWPYRSHARAR
RREAMLERRDWRSGETCRPPIPLPSSLARQQRLWASPLMTEVLTHVQDVE
DETEEGEIKEGNDGGDLQQRFEIRDTGATSGGWAEELLGNVGLSGDTLLD
SLRRSADKDLSSKTLRAIQNAQEDTRSIVAKVQEELATFGAYAASKAMAD
SKLLVSVGIVVASELAQALARPLLPAAPSSSSSSTAAVAAASPSSTTSVT
SPSSPSPFSELTQNVEFALGLNLTTTITAALTTPSSSSSSSSSSSSLTGA
SPLTLVEKVELVQMGLYPYDWSGLASGGTSTYILSSFSSAGDPDALLLDM
FNKGAAQDGRLLLPFLPPSLLTSLSPFLPRLPKQLVLPLSHSLKALAVIP
SLPSSALRAIDSAHRMNQDAAIRQPSRRLIRSSLAVASSVAAPLLGKGAW
DKQLRQQQQHRVQQRLLVRGVAKTKKRSKGGENKQQQQQQQQQEGWWEGF
KFRQAPEKECPPSFSPPSYSSLSSMSAIPFSSSSAEEEGDGDEDEEQQQG
KNMLWPLVESLEPTRRTATTVLRRGSCSSSRSSTVVVPSQGWTGDEGGEE
GEGGGERVLTMQVSRMARAGVAGTGGGGRERGRGGRRRGRNEAALRAVAA
TMTGVQALDDEDVIEACVEDVDEEEGGREGGVGRELPSLLLRVTLRAVDV
ALLGLEFVTVEGIPRVGRRVEVAVRRVKEGMSGKKGKRGWDLMPVFEKPM
GAEIMTIKRR*

Synonyms

Publications